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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055337 ID=TCONS_00055337|Name=TCONS_00055337|organism=Clytia hemisphaerica|type=transcript|length=2460bpRun BLAST on NCBI transcript from alignment at scaffold_253:309017..333265+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055337 ID=TCONS_00055337|Name=TCONS_00055337|organism=Clytia hemisphaerica|type=transcript|length=24249bp|location=Sequence derived from alignment at scaffold_253:309017..333265+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055337 vs. Swiss-Prot (Human)
Match: NOG2 (Nucleolar GTP-binding protein 2 OS=Homo sapiens GN=GNL2 PE=1 SV=1) HSP 1 Score: 442.195 bits (1136), Expect = 6.902e-163 Identity = 203/292 (69.52%), Postives = 244/292 (83.56%), Query Frame = 3
Query: 759 AYDKTKDGDLLENSEIVEKDEARDPKFSKGQSKRIWNELYKVIDSSDVVIQVLDARDPNGTRSKHIEDFMKNEKKHKHLIFILNKCDLVPTWVTRKWVALLSSEVPTLAFHASVTNPFGKGALIQLLRQFGKLHQGKKNISVGFIGYPNVGKSSIINTLKKKKVCKAAPIPGETKVWQYVTLMRKIYLIDCPGVVYPSGDTETEIVLKGVVRVENLKVPSEHITEVLNRVKEEYIRNTYKIQHWEDAEDFMEQFCKKSGRLLKGGEPDIETGARMILHDFQRGRLPYFVPPP 1634
+YD+ KD DL+ V ++EA++ + KGQSKRIW ELYKVIDSSDVV+QVLDARDP GTRS HIE ++K EK KHLIF+LNKCDLVPTW T++WVA+LS + PTLAFHAS+TNPFGKGA IQLLRQFGKLH KK ISVGFIGYPNVGKSS+INTL+ KKVC API GETKVWQY+TLMR+I+LIDCPGVVYPS D+ET+IVLKGVV+VE +K P +HI VL R K EYI TYKI WE+AEDF+E+ ++G+LLKGGEPD++T +M+L+D+QRGR+P+FV PP
Sbjct: 173 SYDQGKDRDLVTEDTGV-RNEAQEEIYKKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHIETYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLAFHASLTNPFGKGAFIQLLRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSEDSETDIVLKGVVQVEKIKSPEDHIGAVLERAKPEYISKTYKIDSWENAEDFLEKLAFRTGKLLKGGEPDLQTVGKMVLNDWQRGRIPFFVKPP 463 HSP 2 Score: 104.375 bits (259), Expect = 6.902e-163 Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 1
Query: 523 GNTKVITQNALQTFQDEMGKAMSNPYKVVMKASKLPLSLLNDRQK--TARVHLLDTESFENTFGPKSHRKRANIAAGDL 753
GNT+VI Q++LQ FQ+EM M +PYKVVMK SKLP+SLL+DR + +VH+LDTESFE TFGPKS RKR N+ A D+
Sbjct: 82 GNTRVIKQSSLQKFQEEMDTVMKDPYKVVMKQSKLPMSLLHDRIRPHNLKVHILDTESFETTFGPKSQRKRPNLFASDM 160 HSP 3 Score: 70.4774 bits (171), Expect = 6.902e-163 Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 3
Query: 342 PDREKPAAGSRMRDKATIKRLKMYKGGKPVRDKKGKIIIAAEYQSKVKSGEVARVEPNRKW 524
PDR + A G MRD+ATI+RL MY+ K R+ +GKII +YQS V SG VARVEPN KW
Sbjct: 21 PDRVQGAGGQNMRDRATIRRLNMYRQ-KERRNSRGKIIKPLQYQSTVASGTVARVEPNIKW 80 The following BLAST results are available for this feature:
BLAST of TCONS_00055337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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