|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055338 ID=TCONS_00055338|Name=TCONS_00055338|organism=Clytia hemisphaerica|type=transcript|length=2368bpRun BLAST on NCBI transcript from alignment at scaffold_253:309114..333265+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055338 ID=TCONS_00055338|Name=TCONS_00055338|organism=Clytia hemisphaerica|type=transcript|length=24152bp|location=Sequence derived from alignment at scaffold_253:309114..333265+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055338 vs. Swiss-Prot (Human)
Match: NOG2 (Nucleolar GTP-binding protein 2 OS=Homo sapiens GN=GNL2 PE=1 SV=1) HSP 1 Score: 442.195 bits (1136), Expect = 6.462e-169 Identity = 203/292 (69.52%), Postives = 244/292 (83.56%), Query Frame = 1
Query: 667 AYDKTKDGDLLENSEIVEKDEARDPKFSKGQSKRIWNELYKVIDSSDVVIQVLDARDPNGTRSKHIEDFMKNEKKHKHLIFILNKCDLVPTWVTRKWVALLSSEVPTLAFHASVTNPFGKGALIQLLRQFGKLHQGKKNISVGFIGYPNVGKSSIINTLKKKKVCKAAPIPGETKVWQYVTLMRKIYLIDCPGVVYPSGDTETEIVLKGVVRVENLKVPSEHITEVLNRVKEEYIRNTYKIQHWEDAEDFMEQFCKKSGRLLKGGEPDIETGARMILHDFQRGRLPYFVPPP 1542
+YD+ KD DL+ V ++EA++ + KGQSKRIW ELYKVIDSSDVV+QVLDARDP GTRS HIE ++K EK KHLIF+LNKCDLVPTW T++WVA+LS + PTLAFHAS+TNPFGKGA IQLLRQFGKLH KK ISVGFIGYPNVGKSS+INTL+ KKVC API GETKVWQY+TLMR+I+LIDCPGVVYPS D+ET+IVLKGVV+VE +K P +HI VL R K EYI TYKI WE+AEDF+E+ ++G+LLKGGEPD++T +M+L+D+QRGR+P+FV PP
Sbjct: 173 SYDQGKDRDLVTEDTGV-RNEAQEEIYKKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHIETYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLAFHASLTNPFGKGAFIQLLRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSEDSETDIVLKGVVQVEKIKSPEDHIGAVLERAKPEYISKTYKIDSWENAEDFLEKLAFRTGKLLKGGEPDLQTVGKMVLNDWQRGRIPFFVKPP 463 HSP 2 Score: 172.555 bits (436), Expect = 6.462e-169 Identity = 89/152 (58.55%), Postives = 110/152 (72.37%), Query Frame = 2
Query: 245 PDREKPAAGSRMRDKATIKRLKMYKGGKPVRDKKGKIIIAAEYQSKVKSGEVARVEPNRKWFGNTKVITQNALQTFQDEMGKAMSNPYKVVMKASKLPLSLLNDRQK--TARVHLLDTESFENTFGPKSHRKRANIAAGDLSMPMIKPKMVT 694
PDR + A G MRD+ATI+RL MY+ K R+ +GKII +YQS V SG VARVEPN KWFGNT+VI Q++LQ FQ+EM M +PYKVVMK SKLP+SLL+DR + +VH+LDTESFE TFGPKS RKR N+ A D+ + +M T
Sbjct: 21 PDRVQGAGGQNMRDRATIRRLNMYRQ-KERRNSRGKIIKPLQYQSTVASGTVARVEPNIKWFGNTRVIKQSSLQKFQEEMDTVMKDPYKVVMKQSKLPMSLLHDRIRPHNLKVHILDTESFETTFGPKSQRKRPNLFASDMQSLIENAEMST 171 The following BLAST results are available for this feature:
BLAST of TCONS_00055338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.