TCONS_00055341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055341
Unique NameTCONS_00055341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055341 ID=TCONS_00055341|Name=TCONS_00055341|organism=Clytia hemisphaerica|type=transcript|length=435bp
GCcggttttaaagatttaaagaaGAAACACATAATACAAGGAGATTCCAT
TGACACAATGGGAAACGAGAAGCTTGGAGTTCCGTACTATTATCACTTTC
GAAAGGACTTAAACAGGCCATATGGATTGGCTTGGGACCGTGACTTTTAC
GAACGCGAGCAAATGAAGAAAGCATTAAAGACTGTCAACTGCGAATTCTT
TAACAGGCTGTTATATGGCATGTCCGAGTTTGCATCCACCGTCGAACAAG
ACTTCGATTTCATGTCTAGCAGTGATGCTCACGAATTCATTCCGATGTAC
TTGGAAAAAGTATCCGCGATTGTCAAGCATTGCGTAGTGTTAAACAGACA
GAACAAGAGTGGCGCTGACGAACAAGCAAGTCTAGCCGCATTagaagaat
ttttcaacaaaaaggaTGAGCTTTTCGAATCACAC
Run BLAST on NCBI

protein sequence of TCONS_00055341-protein

>TCONS_00055341-protein ID=TCONS_00055341-protein|Name=TCONS_00055341-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
AGFKDLKKKHIIQGDSIDTMGNEKLGVPYYYHFRKDLNRPYGLAWDRDFY
EREQMKKALKTVNCEFFNRLLYGMSEFASTVEQDFDFMSSSDAHEFIPMY
LEKVSAIVKHCVVLNRQNKSGADEQASLAALEEFFNKKDELFESH
Run BLAST on NCBI

transcript from alignment at scaffold_253:342675..343249+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055341 ID=TCONS_00055341|Name=TCONS_00055341|organism=Clytia hemisphaerica|type=transcript|length=575bp|location=Sequence derived from alignment at scaffold_253:342675..343249+ (Clytia hemisphaerica)
GCcggttttaaagatttaaagaaGAAACACATAATACAAGGAGATTCCAT
TGACACAATGGGAAACGAGAAGCTTGGAGTTCCGTACTATTATCACTTTC
GAAAGGACTTAAACAGGCCATATGGATTGGCTTGGGACCGTGACTTTTAC
GAACGCGAGCAAATGAAGAAAGCATTAAAGACTGTCAACTGCGAATTCTT
TAACAGGCTGTTATATGGCATGTCCGAGTTTGCATCCACCGTCGAACAAG
ACTTCGATTTCATGTCTAGCAGTGATGCTCACGAATTCATTCCGATGTAC
TTGGAAAAAGTATCCGCGATTGTCAAGCATTGCGTAGTGTTAAACAGACA
GAACAAGAGTGGCGGTaagtaaattttatttcataatggCCCTGGACAGA
AAGTGCTAATAATTTCCTTTTCTTACGCGAAATGTACCCGTGTCCATTCT
ATGTTGTTCAAATTGGAACgtctttatttaattttttttatatctttcaT
GTAGCTGACGAACAAGCAAGTCTAGCCGCATTagaagaatttttcaacaa
aaaggaTGAGCTTTTCGAATCACAC

Coding sequence (CDS) from alignment at scaffold_253:342675..343249+

>TCONS_00055341 ID=TCONS_00055341|Name=TCONS_00055341|organism=Clytia hemisphaerica|type=CDS|length=870bp|location=Sequence derived from alignment at scaffold_253:342675..343249+ (Clytia hemisphaerica)
GCcggttttaaagatttaaagaaGAAACACATAATACAAGGAGATTCCAT
TGACACAATGGGAAACGAGAAGCTTGGAGTTCCGTACTATTATCACTTTC
GAAAGGACTTAAACAGGCCATATGGATTGGCTTGGGACCGTGACTTTTAC
GAACGCGAGCAAATGAAGAAAGCATTAAAGACTGTCAACTGCGAATTCTT
TAACAGGCTGTTATATGGCATGTCCGAGTTTGCATCCACCGTCGAACAAG
ACTTCGATTTCATGTCTAGCAGTGATGCTCACGAATTCATTCCGATGTAC
TTGGAAAAAGTATCCGCGATTGTCAAGCATTGCGTAGTGTTAAACAGACA
GAACAAGAGTGGCGCTGACGAACAAGCAAGTCTAGCCGCATTagaagaat
ttttcaacaaaaaggaTGAGCTTTTCGAATCACACGCcggttttaaagat
ttaaagaaGAAACACATAATACAAGGAGATTCCATTGACACAATGGGAAA
CGAGAAGCTTGGAGTTCCGTACTATTATCACTTTCGAAAGGACTTAAACA
GGCCATATGGATTGGCTTGGGACCGTGACTTTTACGAACGCGAGCAAATG
AAGAAAGCATTAAAGACTGTCAACTGCGAATTCTTTAACAGGCTGTTATA
TGGCATGTCCGAGTTTGCATCCACCGTCGAACAAGACTTCGATTTCATGT
CTAGCAGTGATGCTCACGAATTCATTCCGATGTACTTGGAAAAAGTATCC
GCGATTGTCAAGCATTGCGTAGTGTTAAACAGACAGAACAAGAGTGGCGC
TGACGAACAAGCAAGTCTAGCCGCATTagaagaatttttcaacaaaaagg
aTGAGCTTTTCGAATCACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034863XLOC_034863Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055341-proteinTCONS_00055341-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055341-exon-scaffold_253-1491911889:342675..343038TCONS_00055341-exon-scaffold_253-1491911889:342675..343038Clytia hemisphaericaexon
TCONS_00055341-exon-scaffold_253-1510915933:342675..343038TCONS_00055341-exon-scaffold_253-1510915933:342675..343038Clytia hemisphaericaexon
TCONS_00055341-exon-scaffold_253-1575043694:342675..343038TCONS_00055341-exon-scaffold_253-1575043694:342675..343038Clytia hemisphaericaexon
TCONS_00055341-exon-scaffold_253-1491911889:343179..343249TCONS_00055341-exon-scaffold_253-1491911889:343179..343249Clytia hemisphaericaexon
TCONS_00055341-exon-scaffold_253-1510915933:343179..343249TCONS_00055341-exon-scaffold_253-1510915933:343179..343249Clytia hemisphaericaexon
TCONS_00055341-exon-scaffold_253-1575043694:343179..343249TCONS_00055341-exon-scaffold_253-1575043694:343179..343249Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:342675..343249 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.313962	0	0	0.173893	0.211698	0.334573	0.807296	0.188945	0	3.60484	1.59043	0.836389	0.522016	0.108424	1.06967	0.478299	0	0.120787	0.667498	0.174622	0	0	0	0	0	0	0	0.229723	0.348474	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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