TCONS_00055346 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055346
Unique NameTCONS_00055346
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1108

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055346 ID=TCONS_00055346|Name=TCONS_00055346|organism=Clytia hemisphaerica|type=transcript|length=1108bp
caagtcaaattagaaccttaccgtctctgCCACAGAAAAACACACTTCTT
GGAACGAAGACGACAAATAATTTAATGACCATTCTACTTGAATAACATAG
TAATTAAATTACTTTACTTAACGACTTTacagtttgaaaataattgacTT
TTATTGCTACCACAAAAAGTCATCATAAAAATAAACGATCCAAGACACGA
GAAAAGCAGCAAAGAGCAGAGATAGTTTGCTCTTGAGAAAAGCAAGAAAA
CTCTTATTGATATGTTGCCACCACAAAACAATACATACTGGAAATGGCAA
AAGATGACTACAACCTTGCAATTAACATGGATGGTAATAGCCACAGTGGC
TGGTGGATTGTATGTTAGTGACATCTATTCTTATGAAGGGagagaaaaac
ttcaaaaagtttcgATGTATCAAGTCAAAAGCAGATCATTCTTCCCAGTA
TGGACAAGCTGGACACTATTGTTCAATGTCTTGTTAGGACTTACTGGAAT
TTATACTAGGAAGGAAGGGTTCATTAGTAACAAAATGTGGTTTGATTTGT
TGAACATTTTTTTCAGACTGGCAATGATTCTTCTATTGGGTTTTGTCTTC
GTAACGTCATATGGTTTTTGTGTGCGGAATGGACCAAGAGGTCTTTCATA
CGAGGGTTCGCGGTGCAAAGATGATGAAGTGTTTTGCATACCGTGCTACA
CAGACACGATTGATCGCATCAGGTTAGAGTTTGGTTTGCTTATAGTGATA
TTGGTGATGGAAATCTTATCTTTGGTGACACTCTTTGTGTCTTGTATTCT
TTATTGCACCAAATGTAATGAGAATTGTGCTGCAAGACATATGGAAAGCA
ATAGGGTGAGGTATGAAATAGGACAAGAGAATGTTTTGCTCCAAGCTAat
gataccttaagggaagaaattttcgcgagaagaaattttcgcggaagaaa
ttttcgcggaatttaatttcgcgaattggggcgaaacacaccaaaattgt
taaatcgcgaaattaaattccgcgaaattcgattttttttcttcttcttt
tattttgttgtttttgaccaggtgttaccaaaaaatatggacacaattaa
tttttaag
Run BLAST on NCBI

transcript from alignment at scaffold_253:515412..524675+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055346 ID=TCONS_00055346|Name=TCONS_00055346|organism=Clytia hemisphaerica|type=transcript|length=9264bp|location=Sequence derived from alignment at scaffold_253:515412..524675+ (Clytia hemisphaerica)
caagtcaaattagaaccttaccgtctctgCCACAGAAAAACACACTTCTT
GGAACGAAGACGACAAATAATTTAATGACCATTCTACTTGAATAACATAG
TAATTAAATTACTTTACTTAACGACTTTacagtttgaaaataattgacTT
TTATTGCTACCACAAAAAGTCATCATAAAAATAAACGATCCAAGACACGA
GAAAAGCAGCAAAGAGCAGAGATAGTTTGCTCTTGAGAAAAGCAAGAAAA
CTCTTATTGATATGTTGCCACCACAAAACAATACATACTGGAAATGGCAA
AAGATGACTACAACCTTGCAATTAACATGGATGGTAATAGCCACAGTGGC
TGGTGGATTGTATGTTAGTGACATCTATTCTTATGAAGGGagagaaaaac
ttcaaaaagtttcgATGTATCAAGTCAAAAGCAGATCATTCTTCCCAGTA
TGGACAAGCTGGACACTATTGTTCAATGTCTTGTTAGGACTTACTGGAAT
TTATACTAGGAAGGAAGGGTTCATTAGTAACAAAATGTGGTTTGATTTGT
TGAACATTTTTTTCAGACTGGCAATGATTCTTCTATTGGGTTTTGTCTTC
GTAACGTCATATGGTTTTTGTGTGCGGAATGGACCAAGAGGTCTTTCATA
CGAGGGTTCGCGGTGCAAAGATGATGAAGTGTTTTGCATACCGTGCTACA
CAGACACGATTGATCGCATCAGGTTTGAGTATGGTTTGCTTATAGTGATA
TTGGTGATGGAGATTCTATCTTTGTTTACACTGATTGCATGTACCAGTCT
CGATGGCATAAGATGTATTGAAAATGATGTAACAAAACAAACACAAGATC
AAATTTCATCCGAAATTAAGAAAGATCATTGTGCGTAAAAGCTTCCCAAC
CGTTGAAAAGAATGTGGAATAATAAAGGATTATGAATAAATAAGCCTCCA
TCATTTCGACTTTTTGCTACCAAGACCTTCCAACCATTGTGAAGAACGAG
AAACAATTATACATAACATCGCGCCGAATGGGGTTTcctaattttgacgt
tcgaatcataaacgtcaaaaagacgggggtaaaacgTTCGAAATCACGTC
AGAAATGGCGCGCGGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAATAGAACGCG
CgcgaaaaaacaatgcaatgacttcttctctGAGATGACAAAAATCGCAA
CACCAATTTGGTGCgatgaaaagaatctttttcaaaaagtgcacGACACG
TCTTGATAAATAGTATATTACTCATTTAAATGTTTAATTCTAGCTTTAAA
ATTTTAGTTTGTAAGTCATCAGCTCATTTTCCATGCATTGTAAAAATAGT
TACATTCTTTATTAAAGAAATAAAGcataataaaaacaatgtttttttat
tgaaacatgacATTAGAAAGTAGACCCTTTGGAATTTCTCACTTACTTAG
GTCTTTCTAAACTGACCCGCATTCTAAAAACAAAAGACAGCGCATGCGTA
TTTTGTCAATTCGATGATTGAGCGCTGATATGATGTTAAAGTCCATTCGT
TTTAAATGTGTACTAATTTTTGTTTAGCTTGCCATTTTCCAACCTATGCT
TCAAATGTACTaatttatgagaaaaataattcacaaaaattttgaaaatg
aagaaaaaaaaaatacaaactttGAACCCTCTTGatttcagaaatatttt
tttttcacatatgAAAATTATAGGCCTAAGATTGTCCTTAAAAGTAGACC
ACAACAAAAACAGGGCTTCTCAATTGTAACGAGCTACCCACTAACCAGGT
TGTAACTTGCGATCCGAAGGGGGGAGGAGGTGCTTAGGCAAAATAGgtac
cgggtatgtgcgagccataacggtccctttttcacaccctcgaaagtcga
aggggtacaaaaaccattaaaacgcaaattgagtctctgtaagggttcca
aaattacaaaGATCTAAAATCTAATCCCTCAAATCCCTCAAATCCCTcgt
aaattcttaaaattttattttttatttttatgaaaattttatttcattaa
aaaaattgactttgaccCCTGCAGAaagattttcccacaacgccactgat
gTAAAGTTATCTTTTAGTTTAGAAAAGAGGTGGTAAACCAGAAACACACA
ATTTACCATGGTATAAAAAATTCGAAGAATGGCGGGATTGGAGTGAAGCC
AATAAATAATTTAACGACCCTTCCTTTTGATTGaggaaaaaatttgaatg
acgtTTAGGTTTGATATGAATAAATAACGCTTCAATCAGCAGAAAATGAT
TATGAAACGAGATAGTTGAGAAATAGGAAGAGAAGCAGACACTTGTTTTC
ATCTTTACACTTAAGAGAATGGATATACAGCGCCGTGAGAGTAGCAATAT
AACTTGGAAATGGCAAAAGATCACTACAACGTTGCTTTTGATATGGATGG
TGCTTGCCACGGTGGCTGGTGGATTTTACGTCAACGATGTCAACNGAGAG
AATGGATATGCAGCGCCGTGAGAGTAGCAATATAACTTGGAAATGGCAAA
AGATCACTACAACGTTGCTTTTGATATGGATGGTGCTTGCCACGGTGGCT
GGTGGATTTTACGTCAACGATGTCAACTCTTACGAAGGAATTgagagatt
tcaaaaaatctcaatGTATAATTTGAAGAAGTTGTTTTTATTCCCGGCGT
GGACAAGTCTAACATTGATTTTCAATGTCCTGTTAGGTTACATTGGTGTC
TTAACCAGGAAGAGATCATACATTAGAATTAAATTAGCACTcgatatttt
aaacattttgttcaGAGCAGCAATGATTTATTTGTTGGGAAAGCTTTATG
TACCAGCATATGGTAAATGTGCTTTGAAGCGACCAAGAGGTGTTTCATAC
AATTCGTGCTGCGAAGATGAGCCTTTCCGCATACCGTGCTACACGGACAC
GATACATCGCATCCGGTTAGAGTTTGGTTTGCTTATAGTGATATTGGTGA
TGGAAATCTTTTCTTTGGCGACACTCTTTGTGTCTTGTATTCTCTATTGC
ACCAAATGTAATGAGAATTGTGCTGCAAGACATATGGAAAGCAATAGGGT
GAGGTATGAAATAAGACAAGAGAATGTTTTGCTCCAAGCTAATGATAACC
ATGTTTAGATATGTAAGTGTGACACATGAGACTGAATCTTATGGAAAGAT
AAAGACATATGGAAAGCAATAAGAGACAGAATATCTTGCTTGAAAACTAA
TGATCATAAAAAGTTTGATATGTGATGGTGGATAAACCACAAGCTAcgtt
ttttaacaaatttattCATTGAATCATTTATAATTCAGTTTATATTGCAG
TTGATAACCAACTCATTTGTAAGAATATTTATACATCAGTTTTACACAga
ctctttttgaaatttgactcGACTCTATGCACCAGTGTTTCATCAGCAAA
AAATTGCAACAATAAGAAAGCCTGGCGGCTTTGagattacacattttttt
aataagtaaCCAAGTTGGTAAGGTTCGAGCCCTGAAATTAgccaaaaatt
atttcactATCTCTTAAAGTAAAATCTTTTTAGTTAATCTAAGCATTACA
AACGATAGCCTTTGATCCAATAAGCATAATTATGGTATAACATCAGGGGT
GATCAAAGCAAGTTTTtgctaagcaaccccagccctgacccgaaaattgg
agttgcttataaaaatattttgtacgCGCTGCTCAGATGTGCAAGGTGCC
GGTTGATTTCTTGATGACCATTTTTGTAGCCACGAGTTCACGTTTCAGGG
GCGATGGaaaaatttgagagtttttgtgGAGAGATTTTTCGTTTAAATTA
ACTCATCAAATACCATCAATCACTCtgtaacttcaaattttcaaatatat
ttctcCAACTAAGAAAGAATTATTACTCTCAACTTATTTTTCATTCGGGT
TTAAAAGCAGGTCGATAAGgacctacacgctttttttataagaatggtgt
tttttcatttcatcatgggtATTTTTAACTTTGTGCGGTGAATAATTGTG
GCGAAgaaggtttttattttattttaatataaAGTAAATAAGTAATTCGT
ATCTATTGACTCGCCATTGGTTTGGAGTGGCCTTCTTCATAAGAACTATG
CAAAGAGAGAAGGTTACAACCCACGACGGAGACGTATTCACAAACGGAag
tcgttttttttttggaaatccaaTGTCGAATGTGTATTATACTAAAAGAT
ACTAGGATTTTaatggattttttttgtttatctttgatAATACGTACCTG
CCGAGTGGCTTGTTATGATCCAGACTATTTTACATTTTAGCAGCAAGCTG
TAATTAGTAATTATTGTTGGAGCATCGtcttgaaacgttacgtaatctgT
TTccacatccccttctcacagacccactaggacCCCTTGCCCCTTacaac
tggaaaaattggccaaaatatagtccccggtggaaaattatcttccgagt
tttgtccccactgaaaataatcaaataaactaatCCTCACTGAAAATGTT
TTACTATTTCTTCCCATccacactgaattttctgaattgaaaacaatata
tggtaatatcaatccccatcgaattTCAGATCGTTATTATTACCGCCTGG
CTGAAAATATCCTATCGGGTCTGTGAGAGGGGTGTGTTTTCATTACGatt
ctacacttttttttaataagaaccattaattttttgttgaggctcagctg
ttcttattttttggcactttgagcctcaaattgttcttatcctgttctta
tttataaggTAAAATTGAAGTATTTTAGGATTTGTACGCATATTTTACTA
CTATGACCCTTagtttgcttgaaattgagtaatttcaggctcagcattgc
tcttaaattatttttattttggcgatttcgAGCCTcatcgttcttataaa
attgttcttataaaagaaaacaagtGTATTCATCTTCAAATTGTGAAGAG
TTGAGAGGAGATACAcgctatttttataagaatacacgggctttataaga
atgtccatgatgaaaatggccaaaaaattaagaatatcgtaagaatTTCA
TGGAATTAGGCAACTGAAGCTAAAAGAATGTTATTTTTAGAGTCTTATTG
CTAGGCAATGCTAAGAAGTTTCACAAAAATCCCAAATTCTTGCTCGAGAT
GCTATAGATTTGGGCTatgttttcaatttaatttaagaatactgtaagaa
tatttcaggataatttcaaccaaaaagttaagaatatccatgatgaaatg
gatttaaccattcttataaaaaaaagcgtgtaaaaggCAGAAATTTGGTG
TAAACGTGGAGGAGGGTGTCTTCTTtgataaaataagaaatcaaacaGAA
AGCATTAAGGCCCCATTACACCTAAGAATATAAAGGAAGAATAATGTGAA
ACTTACTGCACACCTGACACTTGTGAGTAATTTTATTAAGGCCCCATTAC
ACCTAAGAATATAAAGGAAGAATAATGTGAAATTTACTGCACACCTGACA
CTTGTGAgcaattttattaaattctccTGTGTAATCANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaactaacgaacacgggt
taatttataggacctccaccccaccggggtaggtccaaaaatcaaacAGA
AAGCATTAGAAAAGGAGATGTTTGagcttttctttgaaatttcattgttt
tttcttcgttttaATTTTGTGAAGTTGAGATGGGATGCGTCTCATCCATG
TCTATCTTGCGTAATTAGTGAAAGTAGAATAATTTTTGTTGCTGTctagt
aaatttttttgaagactttttaAACCTTATGTAAAGgattatcttttctt
tttatatttagTGAGTGGAAATCGGGAAATGATCACCGTTTTTGCTTTTC
AAATTAACCAATTGTTCTTGTTCTTGATTTTATAGAATTAATAATGATAA
AGCGGAATGTGAAAGTGATACAATCAAGCGTCCGATTGGATAAACGAGCT
GGTTCTTATAATCCTAAGCAAAAAAGTACGTAATCCTAAAGAGTTTAAAG
AAGCAAGAAGAGAGACACTTGGTTCGAAAATCATCTACTTTACTCCTGAG
AGAAACTAGAGATGGATATACAGCGCCGTGAGAGTAGCAATATAACCTGG
AAATGGCAAAAGATCACTTCAACGTTGCTTTTGATATGGATGGTGCTCGC
CACTCTGGCTGGTGGATTTTACGTCAACGATGTCAACTCTTACGAAGAAG
ACGAAAGagagagatttaaaaaaaattcaatgtatAATTTGAAGAGGGAG
TTGTTATTCCCAGCGTGGACAAGTCTAACATTGATTTTCAATGTCCTGTT
AGGTTACATTGGTGTCTTAACCAGGAAGAGATCATACATTAGCATTAAAT
TAGCACTTGATATTTTGAATATCGTGTTCAGGGCGGCAATGATTTTCCTT
ATGGCTGTATTTTGTGCAGCATATGGGGAATGTGTAGTGCAGAGGGGACC
AAGTGGTGTTTATAATGCGTGCTGCGAAGATGAGCCTTTCCGCATACCGT
GCTACACAGTCACGATTGATCGTATCAGGTTAGAGTTTGGTTTGCTTATA
GTGATATTGGTGATGGAAATCTTATCTTTGGTGACACTCTTTGTGTCTTG
TATTCTTTATTGCACCAAATGTAATGAGAATTGTGCTGCAAGACATATGG
AAAGCAATAGGGTGAGGTATGAAATAGGACAAGAGAATGTTTTGCTCCAA
GCTAatgataccttaagggaagaaattttcgcgagaagaaattttcgcgg
aagaaattttcgcggaatttaatttcgcgaattggggcgaaacacaccaa
aattgttaaatcgcgaaattaaattccgcgaaattcgattttttttcttc
ttcttttattttgttgtttttgaccaggtgttaccaaaaaatatggacac
aattaatttttaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034867XLOC_034867Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055346-exon-scaffold_253-1491911889:515412..516133TCONS_00055346-exon-scaffold_253-1491911889:515412..516133Clytia hemisphaericaexon
TCONS_00055346-exon-scaffold_253-1510915933:515412..516133TCONS_00055346-exon-scaffold_253-1510915933:515412..516133Clytia hemisphaericaexon
TCONS_00055346-exon-scaffold_253-1575043694:515412..516133TCONS_00055346-exon-scaffold_253-1575043694:515412..516133Clytia hemisphaericaexon
TCONS_00055346-exon-scaffold_253-1491911889:524290..524675TCONS_00055346-exon-scaffold_253-1491911889:524290..524675Clytia hemisphaericaexon
TCONS_00055346-exon-scaffold_253-1510915933:524290..524675TCONS_00055346-exon-scaffold_253-1510915933:524290..524675Clytia hemisphaericaexon
TCONS_00055346-exon-scaffold_253-1575043694:524290..524675TCONS_00055346-exon-scaffold_253-1575043694:524290..524675Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:515412..524675 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.791574	0.991875	0	0.025913	0	1.43662	0.284629	0	0	0.251029	0	0	0	0	0	0	0.896125	0.830779	0	0	0	0.431189	0.554247	0	0	0	0.584166	2.21497	0.818914	0.415637
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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