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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055356 ID=TCONS_00055356|Name=TCONS_00055356|organism=Clytia hemisphaerica|type=transcript|length=2539bp
aTTTTAAGAACAATTAATACAAAGCTTCCGTCGGAATCAGCGATCTGTAA
GAGATGATAACACTACAATTCATGTCTCACTATGTATGTAACTTGACACT
TTGACAGAATCACTGACAAAGCGCAATTTTGGTTTGTAAAAActtaggaa
atttttttcattcgtTTGTATACCTATGAGAAGTCTCATATGGATTTCAT
TTGCAGTTatcgaaatatttctaaaatgcTTTGTTATTTGATTGGAATTT
AATACAATCTTTAGTTACTAAGGAATGTCTTGAAAATGAGCCAGCATTTT
TTTGCACCTGAGTGACTAATTTCTATTTACCTTTTTAGTTTCCATTCTAC
TCAGCCTTTTTTGACACCACCACTTGACAGAGGTCTAGGTTCCAGGTTGT
ATAAACCAATAATGTTATTTTAACGAGCTTATTCATTTCATCTTCGACGT
ATATTTGCGTAATTTATCaagagaaaaaacaacaaaaaatcccCTGGCTT
GTTGAAACACGTCCTTTGTTTTCTTAGAAAGTCAGCATTTTTATCATCAA
AATGTGAACTGaaagttcaaaaaaaactttcttttgtaTTATTATAGATT
TAATTCATCGTTTGCATGTGAACAATAGTCCAATCAATCGTGTATGCTGT
TTAAATTCTCGAATTCCTTGATTACCGGTTGATATAAAAAGATCATGTCT
GAAAGGCGTTTCAAATCAGAAGAGAAGTCTGCAGTCAACAGTAAGTTGTT
GGGGCAATCCTATGGTACATTATTCCAACCAGGATACGTTCGACAAATCA
GCAGAATGTCTTGGATCAAATCACTATGGAAAAGGGAGAAATTATTAATC
TTCATCGTACTTGCTGTTTTATTGGGGTTATTGGTTGGTCTCTTGATCAA
CAAACCAGTTCAGGAACTTGAAGAACCAGCGAAAGGAAATGTTTTACTTC
TAGTTGGCTTTCCTGGTGAAATCCTTATGCGCATGCTTAAAATGTTGATT
CTACCGCTTATCATGACCAGCTTGATTGTTGGATTAGCTGATCTTGATCA
AAGGTCTTCAGGACGTTTAGGTCGAAGAGCTGTTTTGTATTACATGTTCA
CAACGGGAGTTGCCGTGTTGCTTGGAATCATCCTGGTTGTCTCTATCAAA
CCTGGTAGTTATGGTGGTGATAAAGAATTCAATAAAGATGCAGACCAACC
CAAAACACGAACCATGGATACAATCCTTGATCTTTTACGCAATATGTTCC
CTGAGAACATCGTTCAAGCTTGTATCGAACAAGCAGCTACCAGAGCTGAG
GAGATCACCATTAGAACTGACCGAGTTTACTTTCCTATTATAAACGGTAC
GGAAATGTCAGGGACCATCGAAGCCTACAACTCCACTCACAATGTCTCTA
TTACCAAGAAAACGGTACTTATCTCTGGTAAAACAACTTATCGATCAGGA
ACCAACGTCCTTGGTGTCGTTGTCTTTTCCATCGCTATTGGTCTTCTTCT
CGGTAAAATGGGAACGCAAGCTCATTCCTTCATTCAATGGATCAAGATAT
TTAACGAATTGATCATGAAATTGGTTCAGTATGTCATGTGGTATTCACCT
ATCGGTATTTGGAGTCTGGTTACCAACAAGTTCGCCTCTATGGATGACAT
CTCTGGCACCTTTCAAGGACTGGCATATTACATGGCGACGGTTATTTCAG
GTTTAGTCGTCCACTCGTTCATCGTTCTTCCGTTAACTTATTTCGTATTG
ACGCGGCGTAACCCGTTCTCCTTCATCAAAGGGACCGCTCAAGCCCTCTT
AACCGCGTTCGGAACCAGTTCCAGTTCCGCCACATTACCGGTGACTTTCA
AATGTCTTGAAGATAACAACGGTCTTGATAAACGGGTGACTCGCTTTGTT
TTACCCATCGGAGCTACTATCAATATGGATGGTACGGCTCTTTATGAAGC
AGTCGCTGCAATCTTCATCGCTCAATCGACTGGTATGAGCTTGAATATTG
GACAATACATCGCTATCAGTCTAACCGCTACACTAGCCTCGATCGGTGCA
GCAGGAATTCCCCAGGCTGGTTTAGTGACAATGTTGATGGTTTTACAAAC
CGTGGGTTTACCAGAAGAAGCTGTCACTCTTATCATTTCAGTGGATTGGT
TCTTGGATCGTATTCGCACTACAGTGAATGTACTTGGTGATTGCATCGGT
GCTGGCATTGTGGCTCATCTCTCAGAAGGCGATCTCGAGAAACCTTTAGA
GAACAGttatgaaaatgaaatcaatATTGTAGAAGATGTTATTCGCAATG
gatcaaaaacaagttatgATATTCAAACCAAAGAACATAGAAATGCAAGC
ACTACAAGCTTCTGAATAACTTGCTTAATGGTTTTGGAACTGTATGCCAA
TttgtaaatatcaaatttataatATTATAAGCATAATtcaatcttgtaaa
aaaaacttattatCATGAGAGTTTGTGTTGTTGATAGCATGGGAGGGATC
TTTCTTCATAATCTGAACTTCACTCTCTTTCCTTTTTAT Run BLAST on NCBI transcript from alignment at scaffold_253:631413..633951+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055356 ID=TCONS_00055356|Name=TCONS_00055356|organism=Clytia hemisphaerica|type=transcript|length=2539bp|location=Sequence derived from alignment at scaffold_253:631413..633951+ (Clytia hemisphaerica)
aTTTTAAGAACAATTAATACAAAGCTTCCGTCGGAATCAGCGATCTGTAA
GAGATGATAACACTACAATTCATGTCTCACTATGTATGTAACTTGACACT
TTGACAGAATCACTGACAAAGCGCAATTTTGGTTTGTAAAAActtaggaa
atttttttcattcgtTTGTATACCTATGAGAAGTCTCATATGGATTTCAT
TTGCAGTTatcgaaatatttctaaaatgcTTTGTTATTTGATTGGAATTT
AATACAATCTTTAGTTACTAAGGAATGTCTTGAAAATGAGCCAGCATTTT
TTTGCACCTGAGTGACTAATTTCTATTTACCTTTTTAGTTTCCATTCTAC
TCAGCCTTTTTTGACACCACCACTTGACAGAGGTCTAGGTTCCAGGTTGT
ATAAACCAATAATGTTATTTTAACGAGCTTATTCATTTCATCTTCGACGT
ATATTTGCGTAATTTATCaagagaaaaaacaacaaaaaatcccCTGGCTT
GTTGAAACACGTCCTTTGTTTTCTTAGAAAGTCAGCATTTTTATCATCAA
AATGTGAACTGaaagttcaaaaaaaactttcttttgtaTTATTATAGATT
TAATTCATCGTTTGCATGTGAACAATAGTCCAATCAATCGTGTATGCTGT
TTAAATTCTCGAATTCCTTGATTACCGGTTGATATAAAAAGATCATGTCT
GAAAGGCGTTTCAAATCAGAAGAGAAGTCTGCAGTCAACAGTAAGTTGTT
GGGGCAATCCTATGGTACATTATTCCAACCAGGATACGTTCGACAAATCA
GCAGAATGTCTTGGATCAAATCACTATGGAAAAGGGAGAAATTATTAATC
TTCATCGTACTTGCTGTTTTATTGGGGTTATTGGTTGGTCTCTTGATCAA
CAAACCAGTTCAGGAACTTGAAGAACCAGCGAAAGGAAATGTTTTACTTC
TAGTTGGCTTTCCTGGTGAAATCCTTATGCGCATGCTTAAAATGTTGATT
CTACCGCTTATCATGACCAGCTTGATTGTTGGATTAGCTGATCTTGATCA
AAGGTCTTCAGGACGTTTAGGTCGAAGAGCTGTTTTGTATTACATGTTCA
CAACGGGAGTTGCCGTGTTGCTTGGAATCATCCTGGTTGTCTCTATCAAA
CCTGGTAGTTATGGTGGTGATAAAGAATTCAATAAAGATGCAGACCAACC
CAAAACACGAACCATGGATACAATCCTTGATCTTTTACGCAATATGTTCC
CTGAGAACATCGTTCAAGCTTGTATCGAACAAGCAGCTACCAGAGCTGAG
GAGATCACCATTAGAACTGACCGAGTTTACTTTCCTATTATAAACGGTAC
GGAAATGTCAGGGACCATCGAAGCCTACAACTCCACTCACAATGTCTCTA
TTACCAAGAAAACGGTACTTATCTCTGGTAAAACAACTTATCGATCAGGA
ACCAACGTCCTTGGTGTCGTTGTCTTTTCCATCGCTATTGGTCTTCTTCT
CGGTAAAATGGGAACGCAAGCTCATTCCTTCATTCAATGGATCAAGATAT
TTAACGAATTGATCATGAAATTGGTTCAGTATGTCATGTGGTATTCACCT
ATCGGTATTTGGAGTCTGGTTACCAACAAGTTCGCCTCTATGGATGACAT
CTCTGGCACCTTTCAAGGACTGGCATATTACATGGCGACGGTTATTTCAG
GTTTAGTCGTCCACTCGTTCATCGTTCTTCCGTTAACTTATTTCGTATTG
ACGCGGCGTAACCCGTTCTCCTTCATCAAAGGGACCGCTCAAGCCCTCTT
AACCGCGTTCGGAACCAGTTCCAGTTCCGCCACATTACCGGTGACTTTCA
AATGTCTTGAAGATAACAACGGTCTTGATAAACGGGTGACTCGCTTTGTT
TTACCCATCGGAGCTACTATCAATATGGATGGTACGGCTCTTTATGAAGC
AGTCGCTGCAATCTTCATCGCTCAATCGACTGGTATGAGCTTGAATATTG
GACAATACATCGCTATCAGTCTAACCGCTACACTAGCCTCGATCGGTGCA
GCAGGAATTCCCCAGGCTGGTTTAGTGACAATGTTGATGGTTTTACAAAC
CGTGGGTTTACCAGAAGAAGCTGTCACTCTTATCATTTCAGTGGATTGGT
TCTTGGATCGTATTCGCACTACAGTGAATGTACTTGGTGATTGCATCGGT
GCTGGCATTGTGGCTCATCTCTCAGAAGGCGATCTCGAGAAACCTTTAGA
GAACAGttatgaaaatgaaatcaatATTGTAGAAGATGTTATTCGCAATG
gatcaaaaacaagttatgATATTCAAACCAAAGAACATAGAAATGCAAGC
ACTACAAGCTTCTGAATAACTTGCTTAATGGTTTTGGAACTGTATGCCAA
TttgtaaatatcaaatttataatATTATAAGCATAATtcaatcttgtaaa
aaaaacttattatCATGAGAGTTTGTGTTGTTGATAGCATGGGAGGGATC
TTTCTTCATAATCTGAACTTCACTCTCTTTCCTTTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055356-exon-scaffold_253-1491911889:631413..633951 | TCONS_00055356-exon-scaffold_253-1491911889:631413..633951 | Clytia hemisphaerica | exon |
| TCONS_00055356-exon-scaffold_253-1510915933:631413..633951 | TCONS_00055356-exon-scaffold_253-1510915933:631413..633951 | Clytia hemisphaerica | exon |
| TCONS_00055356-exon-scaffold_253-1575043694:631413..633951 | TCONS_00055356-exon-scaffold_253-1575043694:631413..633951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:631413..633951 + |
Blast
BLAST of TCONS_00055356 vs. Swiss-Prot (Human)
Match: EAA2 (Excitatory amino acid transporter 2 OS=Homo sapiens GN=SLC1A2 PE=1 SV=2) HSP 1 Score: 446.817 bits (1148), Expect = 4.956e-146 Identity = 238/480 (49.58%), Postives = 330/480 (68.75%), Query Frame = 2
Query: 914 ELEEPAKGNVLLLVGFPGEILMRMLKMLILPLIMTSLIVGLADLDQRSSGRLGRRAVLYYMFTTGVAXXXXXXXXXXXKPGSYGGDKEFNKDADQPKTRTMDTILDLLRNMFPENIVQACIEQAATRAEEITIRTDRVYFPIINGTEMSGTIEAYNSTHNVSITKKTVLISGKTTYRSGTNVLGVVVFSIAIGLLLGKMGTQAHSFIQWIKIFNELIMKLVQYVMWYSPIGIWSLVTNKFASMDDISGTFQGLAYYMATVISGLVVHSFIVLPLTYFVLTRRNPFSFIKGTAQALLTAFGTSSSSATLPVTFKCLEDNNGLDKRVTRFVLPIGATINMDGTALYEAVAAIFIAQSTGMSLNIGQYIAISLTATLASIGAAGIPQAGLVTMLMVLQTVGLPEEAVTLIISVDWFLDRIRTTVNVLGDCIGAGIVAHLSEGDLEKPLENSYENEINIVEDVIRNGSKTSYDIQTKEHRNAST 2353
L P +V++L+ FPG+ILMRMLKMLILPLI++SLI GL+ LD ++SGRLG RA++YYM TT +A +LG+ILV++I PG+ K+ + ++D LDL+RN+FPEN+VQAC +Q T +++ + P S + N T + ++I ++ G NVLG++ F IA G+ +GKMG QA + + I NE++MKLV +MWYSP+GI L+ K ++ D+ + L YM TVI GL++H I LPL YFV+TR+NPFSF G QA +TA GT+SS+ TLPVTF+CLE+N G+DKRVTRFVLP+GATINMDGTALYEAVAAIFIAQ G+ L+ GQ + +SLTATLAS+GAA IP AGLVTML++L VGLP E ++L+++VDW LDR+RT+VNV+GD GAGIV HLS+ +L+ + +++ + ED+ +++ YD K HR +++
Sbjct: 65 RLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISSLITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKNDEVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVLVAPP----PDEEANATSAVVSLLNETVTEVPEETKMVIKKGLEFKDGMNVLGLIGFFIAFGIAMGKMGDQAKLMVDFFNILNEIVMKLVIMIMWYSPLGIACLICGKIIAIKDLEVVARQLGMYMVTVIIGLIIHGGIFLPLIYFVVTRKNPFSFFAGIFQAWITALGTASSAGTLPVTFRCLEENLGIDKRVTRFVLPVGATINMDGTALYEAVAAIFIAQMNGVVLDGGQIVTVSLTATLASVGAASIPSAGLVTMLLILTAVGLPTEDISLLVAVDWLLDRMRTSVNVVGDSFGAGIVYHLSKSELD-----TIDSQHRVHEDIEMTKTQSIYD-DMKNHRESNS 534
The following BLAST results are available for this feature:
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