TCONS_00055390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055390
Unique NameTCONS_00055390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3043

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055390 ID=TCONS_00055390|Name=TCONS_00055390|organism=Clytia hemisphaerica|type=transcript|length=3043bp
ataaacaaataaaaatgttatcaACAGTTGATGCACTTGGATCTTCTGAT
CCATTCAATATGATGGTGAAAGATAtgccagattttgaaaaacctgCCTT
GAAGAAATCACTATTTGAGCGACTTCTCAATGCTTATGTGGAGGAGAAGA
AGCAACAACAAGAAAAAGGGGATTTCAACAAGGAGTCCATGCTTCTTCAA
AAGATAGTCAAGGAAGACGACCTTGGTGTTCTGATTGTCAATCTGTATCC
TGGTAGTGATGGATATTCACTGatgttgaaaaagaaagatgGAAGTGATG
TGGAGACGTATAAACTCCCCTATGAGGAAAGTGAATTCTTAGATTACTTG
GATACACAAGAACTACCTCCTCTCCTTGTGGATGTTTTGGAGAGTGCTCA
GGTTGATCTATTCTATGATGGTTGTGTCATTGTGGAGTTACGTGATTACA
GACGAAGTACTCAGAAAAACTTTGATACCACTTACATTTTATTAAAACCA
ACCTCACAGACCATTGTTCGTGATGTAAACTCATTGATGTCAGACCCGAA
ATGGAGTAACGAAGACAAGGCCAAACTAGAATCTCAATTAGTTTTAGCTA
TGCAACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTCTTTACACTGCC
AACAAAATACAACACCATGCCAATAAATGGAATCATAAAGGTTTACGAAG
GTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGCATATTTATGTT
CTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATTTcatcaaacaa
aacaaagataaacGTTCCAGTAATTCTTTCCATAAATTGAGTAGAGCCAC
CCAACATACTGACATGTGGAAACAAAGACAACTCAACCTATCTGTGCCAT
CGAAAATAGACGTAACCTCACATGCAAAACTGATGGAACTACCGAAATAC
ACAACAGATTATACGCCAGAGAAAATCCAAGAAATTATTTTGGAAGGCGA
AAAGACCAACAACCGTTCTTATTATTGTCGTGTTACCATCCAAAGACGTG
GCTCAACAGGCGAATATATTGGCGATCTCTACCTAGAGGAAGACCATGGG
AAAACGAAGGAAGATACGAAGAAAGATGGGCGTGCATGCAGGTTTTCTCT
GGTCAACCGAATCACAGCGCAACGCTATTTACAACAGTTTCAAGAACTCT
ACACAGAAGAAGGTCGGAAATCAgtcaaaatttcaacctttgTCGCAAAC
CAAGCACAAcgaaatcaacaacaacaacagcaacaagcACAAAACAGTAA
CAACGCCTCACAACAAGCCAAAACACAAgcacaacaacagcaacaacaga
CTGCTCAGATCTTACAACAAGCTGCACACCAGGCTGCGACACAAAAGATC
ATTGTTTCGTCAGTTCCGACATCCACGACACAAATGACAACCCATACCAT
CGTCAATCAGAATCGCACGTTCACTGTGGCTCAGAACCCAGTCATTTCAC
ATGGTGGAAATACATACATTCTTGCAAGCTCGGCACTTCAACAATCACTT
AACTTGGGATCCAATGTTGTACCAATGTCGTTATCAAGGAATCCTTACAT
AGTAAATTCATCAGGAAACCTTCAACAAGCTGTATCAACCAAAACCAACC
AATCGCCAAGCAAAATTATTGGAGCGTCTAATGAAAATGCACAGCTAACA
ACAGCTTACATCCAATCTGTATCGGGTGCAACGATAGGAGGAACTTCACA
TGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGGAAACAATGTCAGTT
TGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCATCTCCACAAACAATA
CGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAGGTACCAGGCAATCT
TGTACCACTCTCTCAAATGACCAGAGTAGCTGGTGGACCACAAAAGGGAC
AAATTCCTGGTGCTGGCATGGCTTCAGTTATGGTCCACGGGAAGCAAGTC
ATGGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTACCTTCATACCTAA
CCAAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCATCATTC
AAGGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAACACAAGGACAA
ACTGTCATGATACAGGGACAGCCAGGACAACATCAAACTGGTCAGAATAC
TTTGATCCAAGGACAAGCACTGCAAGGTCAACCTGTATTCATCCAAGGTC
AACCGAATGGCCAAACGCAGGTTGTTCAAGGTCAAGCAATCATGTTGCAG
GGCAATCAAGGTGGACACCAGGGCCAAGTTCAATTGATCACAACTTCAAC
ATCAAGCGGCGGCCAACAACTTCAAATCGTCCCTCAAATACAAAAACAAG
CAGTAATTACAAGTTCAGCTGGACGCACGCAATCATCTACCGCTCTCTCT
GCTTTAACATCACAAGTTAACTTGATCCCTATGCAACAGAGTGGACAACA
ATATCAACCCATCGTTCAATTCACTACTTCCGCCCAACCCCGCCCTGTTC
AACAGAGGCGTAAAAGTGCTTCTCAACCCAACGCAGCGGGTGGTGGGCGG
AAGCGTGCCCCTGCACCTACTAAACCTTCTCCCCAATCACAGTAAAACAC
CCCAAACCTTTTTCCATTTCACATCTGTATGATTCTCTTACCTTTAATTC
CGCCTAATTGATCTAGAAGTGTTCTGTTCTGAATGAACTACTTTTGATAT
ATCATCAATGGCAAAATGTCACTTTACTAGTCTTCTTGGATTTAcgaagt
tttcaatttttaagtgCGGCATACATAGTCATAATAATGATTTCAttgtg
aaaacattttttctgttgcaGGTGTTGTATAGTTTAAGTTACAATCTCTT
TTGTATATCACCAAATCTCTTCTGCTATAAACTACTTATTATTATGGACT
GTATATACTTTTTTTAACTACTTTTGACACAAAATTGACAACACATTTAA
ATGTTTCTTTAATAATCTTAggatattcaaaaatttttagaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:682231..694328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055390 ID=TCONS_00055390|Name=TCONS_00055390|organism=Clytia hemisphaerica|type=transcript|length=12098bp|location=Sequence derived from alignment at scaffold_253:682231..694328+ (Clytia hemisphaerica)
ataaacaaataaaaatgttatcaACAGTTGATGCACTTGGATCTTCTGTA
AGTCTATTTACTACAGTATGATAAAACTTAGAAAGTTTCTGATTTTAATC
ATTAATTCTCTTTTTCCCTAATAATAACAATTACGGGTTTTCAATTTAGG
ATCCATTCAATATGATGGTGAAAGATAtgccagattttgaaaaacctNTG
TGCTGTATAACGACATTATAATTTCCTTAAAGCTTTTTTGTATGAAACTT
TGACTCTTCGCTCCACGAAAGCTTTAACCTTCAAAATTGAAGTAATTTAC
TCAAAAAAGAATCCTATTTCTAGAAAATACAGTTTATTTtgtaatatata
taatatagtGGTAGTATACGATAGCAATAATATTGTGATAATTGTAATGA
TTTCTATTATAtaagtttttatttatgatatttAGTAATCCCAACTTTAG
TTTAATATTATCTtatgatttttcagaaatacatttttcaaaattttttt
ttgtaacctAAAGTTGATTCTTCAGCTAGTTTCTTTGTCAATAAAAGTCG
TAAACTAACCGTCTTGTATTTCATCTTAGAATCTGATAGAATACAATAAT
GacaatataaaataaacaaataaaaatgttatcaACAGTTGATGCACTTG
GATCTTCTGTAAGTCTATTTACTACAGTATGATAAAACTTAGAAAGTTTC
TGATTTTAATCATTAATTCTCTTTTTCCCTAATAATAACAATTACGGGTT
TTCAATTTAGGATCCATTCAATATGATGGTGAAAGATAtgccagattttg
aaaaacctgCCTTGAAGTGAGTATAataacataaaaaaatattttgattg
tgTTATTAACTATGCTACAAATACAAGGTGTTGTGAATTTATTTGCTGTA
TTTTGAAACCTCTGttagaaagaaaaaatcagtcccatttattgactttt
taaaatttttatacaaatttgatTTAGTGGAGTGCTGAATAAGTTTTTTG
AGAGAAATAAATTTGGGAGATGGTtgggaaaaagatttttgatgggaatt
cattttggcaatttttggtcaaaaatctTCATTAGATATTCTCATTAAAA
TCACATTATTCATATAGGAAATCACTATTTGAGCGACTTCTCAATGCTTA
TGTGGAGGAGAAGAAGCAACAACAAGAAAAAGGGGTAAACTAGCAATTAA
AATAAGCTTTTTTTTCTCCATAGTATATGGGTTGATATCAAAATATCCCA
TCATGTTTTATTCCACCATGGTATGTGATATAGTGTTATAAGCTTATTAA
AGTTTATAAGAATGAAAGTGCACTTTTTccaatctttttgaaatatgata
aacAATAGATATTACATTGAACAACTACTGAAATTCAGTATGAAATAATA
TTGAaacacttttatttttccttaaGGATTTCAACAAGGAGTCCATGCTT
CTTCAAAAGATAGTCAAGGAAGACGACCTTGGTGTTCTGATTGTCAATCT
GTATCCTGGTAGTGATGGATATTCACTGatgttgaaaaagaaagatgGAA
GTGATGTGGAGACGTATAAACTCCCCTATGAGGTAATTTGTATTAGGTAA
TTACATAGTCTTTAAGGGGTAGAACATTATGACATATCTGTAAAATCCTA
ATTTAGTGAGGTTTTGCTAAATATGAGAGGATACTTAGATCCATGTGACA
TTATTTTGCTAATGAAATTACTTGAAACTGAAGAGGATAAAGCCTGAGTC
ATTATTATTGTTTACATTGAAATgagtgaaaaatataaaaatacttcTGG
TTTTGAAATCATCATGTCAATCATTGATTTGTTTCCTGATTATTATTTAC
CTTTATAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTACCT
CCTCTCCTTGTGGATGTTTTGGAGAGTGCTCAGGTTTGTAGGTCCATCAC
AACAACATACTTAACGAAGTTGGAATCGTACATAATGTCAGCTTTGTCAA
GCAGAATCCTCTCAAATTTTAGATGATCgtgctattcatgatattatacc
accctaaATATTTTCCCAAACAAAGGGTATTGGTTTTCAAATattagaag
ctgaaaacccacttttCTTGGTATTTTGTACCTTCCCTACAATTTCATGC
ACCTCGCTTTTAAAGAATAAGCTCTAGtctagacggccgactttctgtcc
tgcctattctaattgttagtgTAGGCAGAAAGCGTAcacaaagttggcag
ttaaaatctttgcttggaaaagattgaaagaagtcattgcgttgacgtca
aaaaagggcaatgcattgactttagacagcccactttattaagcccactt
taattcacaattagaataggcagggcgaaaagtgggccgtctaaactaga
gctaacaTCCACCTGTTTGttattcttttgaaaagaattagAAATTAGAA
ATGTTAAAGAGACTGAAATCCTATCAccaaatttttgcttttcaACTGCC
TTCAGAACTCtcattttttcattgtttattactttttgataaaattttat
acTACAGAAAATTAAATATATCCCTATGTAACGATGTTAAGAAATTCTTT
GTTTTCCATGAATAGGTTGATCTATTCTATGATGGCTGTGTCATTGTGGA
GTTACGTGATTACAGAAGAAGTACTCAGAAAAACTTTGATACCACCTACA
TTTTATTAAAACCAACCTCACAGGTAAGCAGTATTTTGTTTAAAGTTGTA
TTTATTTCTCTTCAGGAACAAACTCCTTTTAATACACATTTGTTCTCTTA
CTTGGttgtagattttattttcattgaagCATTTTCCAACTGATTTTGGT
CATAAGAGTACTGTACTATGTTTAGTGTAAACTACCTATATCTAATATAT
TTGTCTCTCTGAAATCTTTGTAGACCATTGTTCGTGATGTAAACTCATTG
ATGTCAGACCCGAAATGGAGTAACGAAGACAAGGCCAAACTAGAATCTCA
ATTAGTTTTAGCTATGCAACCAAGACTGTGTTTAGATCCTTCACCAAAGG
TTCTTTACACTGCCAACAAAATACAACACCATGCCAATAAATGGAATCAT
AAAGGTTTACGAAGGTAAACACCAATGGATTCAGTGTTAGTTCAGTTCAA
GACTTTCTGATAGGCAATGACAAACCCAATGTCACTACCAATAAATAAAT
CTTACCTGATTAAACATGAACCTAATCAATGTTTTAACACTATTCAGCTA
GCATATTATCCAGTATTATCCAAAGCCCATTCTATTTTAGGTCAATGAAA
AGATTTTCACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACC
TTCGCCACCATGTTTGAAGCTGTTAGATTTCATCAAACAAAACAAANgaa
aaatataaaaatacttcTGGTTTTGAAATCATCATGTCAATCATTGATTT
GTTTCCTGATTATTATTTACCTTTATAGGAAAGTGAATTCTTAGATTANT
TAAAGTTTATAAGAATGAAAGTGCACTTTTTccaatctttttgaaatatg
ataaacAATAGATATTACATTGAACAACTACTGAAATTCAGTATGAAATA
ATATTGAaacacttttatttttccttaaGGATTTCAACAAGGAGTCCATG
CTTCTTCAAAAGATAGTCAAGGAAGACGACCTTGGTGTTCTGATTGTCAA
TCTGTATCCTGGTAGTGATGGATATTCACTGatgttgaaaaagaaagatg
GAAGTGATGTGGAGACGTATAAACTCCCCTATGAGGTAATTTGTATTAGG
TAATTACATAGTCTTTAAGGGGTAGAACATTATGACATATCTGTAAAATC
CTAATTTAGTGAGGTTTTGCTAAATATGAGAGGATACTTAGATCCATGTG
ACATTATTTTGCTAATGAAATTACTTGAAACTGAAGAGGATAAAGCCTGA
GTCATTATTATTGTTTACATTGAAATgagtgaaaaatataaaaatacttc
TGGTTTTGAAATCATCATGTCAATCATTGATTTGTTTCCTGATTATTATT
TACCTTTATAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTA
CCTCCTCTCCTTGTGGATGTTTTGGAGAGTGCTCAGGTTTGTAGGTCCAT
CACAACAACATACTTAACGAAGTTGGAATCGTACATAATGTCAGCTTTGT
CAAGCAGAATCCTCTCAAATTTTAGATGATCgtgctattcatgatattat
accaccctaaATATTTTCCCAAACAAAGGGTATTGGTTTTCAAATattag
aagctgaaaacccacttttCTTGGTATTTTGTACCTTCCCTACAATTTCA
TGCACCTCGCTTTTAAAGAATAAGCTCTAGtctagacggccgactttctg
tcctgcctattctaattgttagtgTAGGCAGAAAGCGTAcacaaagttgg
cagttaaaatctttgcttggaaaagattgaaagaagtcattgcgttgacg
tcaaaaaagggcaatgcattgactttagacagcccactttattaagccca
ctttaattcacaattagaataggcagggcgaaaagtgggccgtctaaact
agagctaacaTCCACCTGTTTGttattcttttgaaaagaattagAAATTA
GAAATGTTAAAGAGACTGAAATCCTATCACCAAATTTTGCTTTTCAACTG
CCTTCAGAACTCtcattttttcattgtttattactttttgataaGATTTT
ATACTACAGAAAATTAAATATATTCCTATGTAACGATCGATGTTAAGAAA
TTCTTTGTTTTCCATGAATAGGTTGATCTATTCTATGATGGTTGTGTCAT
TGTGGAGTTACGTGATTACAGACGAAGTACTCAGAAAAACTTTGATACCA
CTTACATTTTATTAAAACCAACCTCACAGGTAAGCAGTGTTGTGTTTATT
TCTCTTCAGGAACAAACTCCTTTTAATACACATTTGTTCTCTTACTTGGt
tgtagattttattttcattgaagCATTTTCCAACTGATTTTGGTCATAAG
AGTACTGTACTATGTTTAGTGTAAACTACCTATATCTAATATATTTGTCT
CTCTGAAATCTTTGTAGACCATTGTTCGTGATGTAAACTCATTGATGTCA
GACCCGAAATGGAGTAACGAAGACAAGGCCAAACTAGAATCTCAATTAGT
TTTAGCTATGCAACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTCTTT
ACACTGCCAACAAAATACAACACCATGCCAATAAATGGAATCATAAAGGT
TTACGAAGGTAAACACCAATGGATTCAGTGTTAGTTCAGTTCAAGACTTT
CTGATAGGCAATGACAAACCCAATGTCACTACCAATAAATAAATCTTACC
TGATTAAACATGAACCTAATCAATGTTTTAACACTATTCAGCTAGCATAT
TATCCAGTATTATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGATTT
TCACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCC
ACCATGTTTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTT
CCAGTAATTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATG
TGGAAACAAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTTAG
TTATTCTTTTTTATACATTCTAACTTCACTATACCATACACCtcctcaca
gacccactgggactccttcccactggaaaaattggcctaaATATCGTCcc
tagtggaaaattatacactTAATTTGTATCCCAACTAAAAATAATCCAAT
GAACTAATCCCCACTACTTATATCATGCTATTTTCTatcctcactgaatt
ttctgacttaaaaacaatggaatttaaatccaCAGTCATAAAAGTATAGG
AATATCGATCCCCAACgaatttcagtccgttatttttacccccactggct
gaaaaaatcccacccccttctcacacacccgagaagggggtgtatcattt
AATACCGATTCTTCATATCTCACGGCTTAAAGAGCTCAAAGTATGAACTA
ATCATGAACTAACAGTGACTCCTTGCANGGATTCAGTGTTAGTTCAGTTC
AAGACTTTCTGATAGGCAATGACAAACCCAATGTCACTACCAATAAATAA
ATCTTACCTGATTAAACATGAACCTAATCAATGTTTTAACACTATTCAGC
TAGCATATTATCCAGTATTATCCAAAGCCCATTCTATTTTAGGTCAATGA
AAAGATTTTCACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACA
CCTTCGCCACCATGTTTGAAGCTGTTAGATTTcatcaaacaaaacaaaga
taaacGTTCCAGTAATTCTTTCCATAAATTGAGTAGAGCCACCCAACATA
CTGACATGTGGAAACAAAGACAACTCAACCTATCTGTGCCATCGAAAATA
GACGTTAGTTATTCTTTTTTATACATTCTAACTTCACTATACCATACACC
tcctcacagacccactgggactccttcccactggaaaaattggcctaaAT
ATCGTCcctagtggaaaattatacactTAATTTGTATCCCAACTAAAAAT
AATCCAATGAACTAATCCCCACTACTTATATCATGCTATTTTCTatcctc
actgaattttctgacttaaaaacaatggaatttaaatccaCAGTCATAAA
AGTATAGGAATATCGATCCCCAACgaatttcagtccgttatttttacccc
cactggctgaaaaaatcccaccgggtgtgtgagaagggggtgtatcattt
AATACCGATTCTTCATATCTCACGGCTTAAAGAGCTCAAAGTATGAACTA
ATCGTGAACTAACAATGACTCCTTGCAAACAGTATTTGTCTATCATCGTT
AAAAGTTTCGATGGTGGTCGAAAGGAATAAGTTAtttgatatttcaattt
tagtttaaaCCACGACTCTCATTTTACAAACTCTTTTAGGTAACCTCACA
TGCAAAACTGATGGAACTACCGAAATACACAACAGATTATACGCCAGAGA
AAATCCAAGAAATTATTTTGGAAGGCGAAAAGACCAACAACCGTTCTTAT
TATTGTCGTGTTACCATCCAAAGACGTGGCTCAACAGGCGAATATATTGG
CGATCTCTACCTAGAGGAAGACCATGGGAAAACGAAGGAAGATACGAAGA
AAGATGGGCGTGCATGCAGGTTTGTCTTTTTTGTTAATTACCTTAGAGAG
ACTTGGACGGTGTTTAGAAAACACCCATGAGGACAGATAGTCTAGAATAT
GTCAACTCAAATGCTGTCTTGACTTCAAAAGTTATGGAAACCTTTAGGAT
CGTTATTTGACCTGACAGATTTGTTTTATTTGTAGAATTTTTCCTGGTAC
CTTAGGTTATGGAGTTCAATTCTATAGTTAGATCTATTTATCAAGCTTTG
TATCATTtggtttttatcattttattttacattcTTTTCGAAAGGTTTTC
TCTGGTCAACCGAATCACAGCGCAACGCTATTTACAACAGTTTCAAGAAC
TCTACACAGAAGAAGGTCGGAAATCAgtcaaaatttcaacctttgTCGCA
AACCAAGCACAAcgaaatcaacaacaacaacagcaacaagcACAAAACAG
TAACAACGCCTCACAACAAGCCAAAACACAAgcacaacaacagcaacaac
agaCTGCTCAGATCTTACAACAAGCTGCACACCAGGCTGCGACACAAAAG
ATCATTGTTTCGTCAGTTCCGACATCCACGACACAAATGACAACCCATAC
CATCGTCAATCAGAATCGCACGTTCACTGTGGCTCAGAACCCAGTCATTT
CACATGGTGGAAATACATACATTCTTGCAAGCTCGGCACTTCAACAATCA
CTTAACTTGGGATCCAATGTTGTACCAATGTCGTTATCAAGTTCGTTTTT
TGAGTTTTACTTAATATCTTTCTTGTGTCTCTACTAAGATTTTCTCATCT
AAgattttctctatttttcgCTTCTAGAATAGTTCCTCTGTTCCACATCC
AAAATCTTATACAACATAACCAGTAAACTCTCTTTTTTCTCTCTACATGA
GTTTACATAACTCAAACGCCAAGTAAGGACAACCCAGTAACTCTTCGAGT
TGCAGAGTAAAAAATCAATACCTTAAGGGGTCAGAAAGAATGTTTCGACT
ACATTGAAATAATGTGCGAGTTATGAAGAGATGCTTTAACATTCAATTTA
ATTATTCAATCTTCTAGGGAATCCTTACATAGTAAATTCATCAGGAAACC
TTCAACAAGCTGTATCAACCAAAACCAACCAATCGCCAAGCAAAATTATT
GGAGCGTCTAATGAAAATGCACAGCTAACAACAGCTTACATCCAAGTAAC
TTCTCATAAATTGATTCTTCCTTTTTTAATTCCAATTATCACCCAAGGGT
GTTTAATTTTGAGCACCATCTAGATTACTTCTGATTGACACGACCATTCT
CAAACCGCTCAACTCGTAATACAAATGCTTGTTCAGTTAGCACTAATCAT
TTTCATACAACGATAAATATTGTTTTGCTTCAGTCTGTATCGGGTGCAAC
GATAGGAGGAACTTCACATGGTCAACTAACGGCAGTTCCTATCGCAGTAC
AAGGAAACAATGTCAGTTTGGTCCCTGGTAATCAGTTCATAGCAGCCAAA
GCATCTCCACAAACAATACGTCCAGCAGGTGCCACTGGGCAAATCATGCT
GCAGGTACATgatcaaatcttttttgttggaataataatattttgcaaaa
agtATCAAGTTATTGACTCTAGTTGGTCTAAGTTGTCTTTGCTCCAACTA
ATTTTATTTGGCATTTCTTTAATAGTGTGAATTGAGCTCTGGTTCTGGTT
TTCCTGGATATTAAATTGTATGTCATCCAATACcttacttatttttcaaa
gtattgtaattttaaagcttaaaagtatttgttgtttttgtaaacTTTCC
AGGTACCAGGCAATCTTGTACCACTCTCTCAAATGACCAGAGTAGCTGGT
GGACCACAAAAGGGACAAATTCCTGGTGCTGGCATGGCTTCGGTTATGGT
CCACGGGAAGCAAGTCATGGTTCAGGGAGGCGCCATGATACAGGGCCAAG
CTACCTTCATACCTAACCAAGCACCATTGATCCCAGGTCTTCAAGGTGGT
CAGACAGCCATCATTCAAGGTGGTTCCATCTTCGTGCAAGGTCAACCAGG
ACAAACACAAGGACAAACTGTCATGATACAGGGACAGCCAGGTAACTTCT
TGACCTTTCTGTGCTCCTTTTTATTCAGATAAAtcgtaatttgaaatttg
aaaactcTGTGATAAAATGGGATTTCTAGCATTACTTATTGAAATTATTT
GATAAGCATAAGCAGTTACCATCTCTTCCTCGGCATATTTTTTTCTCGTT
GTTCATTTCAATATCCAACCCGTAGTAACTCGTTTCGAGCTGTATAATTT
TGTTTGACTTAGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGA
CAGGCACTGCAAGGTCAACCTGTATTCATCCAAGGTCAACCGAANGACCA
TTCTAAAACCGCTCAACTCGTAATACAAATGCTTGTTCAGTTAGCACTAA
TCATTTTCATACAACGATAAATATTGTTTTGCTTCAGTCTGTATCGGGTG
CAACGATAGGAGGAACTTCACATGGTCAACTAACGGCAGTTCCTATCGCA
GTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAATCAGTTCATAGCAGC
CAAAGCATCTCCACAAACAATACGTCCAGCAGGTGCCACTGGGCAAATCA
TGCTGCAGGTACatcatcaaatcttttttgttggaataacaatattttgc
aaaatgtaTCAAGTTATTGACTCTAGTTGGTCTAAGTTGTCTTTGTTCCA
ACTGATTTTATTTGGCATTTCTTTAATACTGTGAATTGGGCTCTGGTTCT
GGTTTTCCTGGATATTAAATTGTATGTCATCCAATACcttacttattttt
caaagtattgtaattttaaagcttaaagctatttgttgtttttgtaaacT
TTTCCAGGTACCAGGCAATCTTGTACCACTCTCTCAAATGACCAGAGTAG
CTGGTGGACCACAAAAGGGACAAATTCCTGGTGCTGGCATGGCTTCAGTT
ATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCGCCATGATACAGGG
CCAAGCTACCTTCATACCTAACCAAGCACCATTGATCCCAGGTCTTCAAG
GTGGTCAGACAGCCATCATTCAAGGTGGTTCCATCTTCGTGCAAGGTCAA
CCAGGACAAACACAAGGACAAACTGTCATGATACAGGGACAGCCAGGTAA
CTTCTTGACCTTTCTGTGCTCCTTTTTATTCAGATAAatcgtaatttttg
aaatttgaaaactcTGTGATAAAATGGGATTTCTAGCATTACTTATTGAA
ATTATTTGATAAGCATAAGCAGTTACCAACTCTTCCTCGGCATATTTTTT
TCTCGTTGTTCCAACCCGTAGTAACTCGTTTCGAGCTGTATAATTTTGTT
TGACTTAGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAAG
CACTGCAAGGTCAACCTGTATTCATCCAAGGTCAACCGAATGGCCAAACG
CAGGTAAGCTATTCAACATTTAAATAACAGTTGACAGTTTCAAATGATTA
ATATGGTGAAAATATTAGTAGCTATTTAGTACTCTACTTTTTAATGTATT
TTATAAATattatttgctttttctcataagGTACACCATAATATACACTG
GTAGCGTTTTTCCAATTTATTACCAACGAATTTCTTTTACTGTACACTTG
TATGATAAAAAAGGCGTCGAGTAAGATATATACTTCGGTAATGTCAAGAC
GAAGCTTCATTGCATATTGTTTGTGATTGTAGTTCATGACGAAATTATAG
CCATTGTCGGAGTTCAATCACTATTCAAAGTATTTTTCACCCTTTCTTCT
TCCTCTACAGGTTGTTCAAGGTCAAGCAATCATGTTGCAGGGCAATCAAG
GTGGACACCAGGGCCAAGTTCAATTGATCACAACTTCAACATCAAGCGGC
GGCCAACAACTTCAAATCGTCCCTCAAATACAAAAACAAGGTATAACTCG
CCCATTTTCATCTTTCTATAATAATAGTACCGGAGCTTtttgtatttgta
tttttttgtaatgaaactttatcaaatgcaaacttaaaatttacttttaa
gATTTACAATATTAGACCCTGTTAGATTTTTTGCCCACGTCTGAAAGATC
GTTGTAAAAGACCTTACAAAAACACTTATTATTCTTGATATTATTCTTAT
TTCAGCAGTAATTACAAGTTCAGCTGGACGCACGCAATCATCTACCGCTC
TCTCTGCTTTAACATCACAAGTTAACTTGATCCCTATGCAACAGAGTGGA
CAACAATATCAACCCATCGTTCAATTCACTACTTCCGCCCAACCCCGCCC
TGTTCAACAGAGGCGTAAAAGTGCTTCTCAACCCAACGCAGCGGGTGGTG
GGCGGAAGCGTGCCCCTGCACCTACTAAACCTTCTCCCCAATCACAGTAA
AACACCCCAAACCTTTTTCCATTTCACATCTGTATGATTCTCTTACCTTT
AATTCCGCCTAATTGATCTAGAAGTGTTCTGTTCTGAATGAACTACTTTT
GATATATCATCAATGGCAAAATGTCACTTTACTAGTCTTCTTGGATTTAc
gaagttttcaatttttaagtgCGGCATACATAGTCATAATAATGATTTCA
ttgtgaaaacattttttctgttgcaGGTGTTGTATAGTTTAAGTTACAAT
CTCTTTTGTATATCACCAAATCTCTTCTGCTATAAACTACTTATTATTAT
GGACTGTATATACTTTTTTTAACTACTTTTGACACAAAATTGACAACACA
TTTAAATGTTTCTTTAATAATCTTAggatattcaaaaatttttagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034875XLOC_034875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055390-exon-scaffold_253-1491911889:682231..682277TCONS_00055390-exon-scaffold_253-1491911889:682231..682277Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1510915933:682231..682277TCONS_00055390-exon-scaffold_253-1510915933:682231..682277Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1575043694:682231..682277TCONS_00055390-exon-scaffold_253-1575043694:682231..682277Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1491911889:682991..683046TCONS_00055390-exon-scaffold_253-1491911889:682991..683046Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1510915933:682991..683046TCONS_00055390-exon-scaffold_253-1510915933:682991..683046Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1575043694:682991..683046TCONS_00055390-exon-scaffold_253-1575043694:682991..683046Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1491911889:683348..683414TCONS_00055390-exon-scaffold_253-1491911889:683348..683414Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1510915933:683348..683414TCONS_00055390-exon-scaffold_253-1510915933:683348..683414Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1575043694:683348..683414TCONS_00055390-exon-scaffold_253-1575043694:683348..683414Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1491911889:683657..683812TCONS_00055390-exon-scaffold_253-1491911889:683657..683812Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1510915933:683657..683812TCONS_00055390-exon-scaffold_253-1510915933:683657..683812Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1575043694:683657..683812TCONS_00055390-exon-scaffold_253-1575043694:683657..683812Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1491911889:684089..684163TCONS_00055390-exon-scaffold_253-1491911889:684089..684163Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1510915933:684089..684163TCONS_00055390-exon-scaffold_253-1510915933:684089..684163Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1575043694:684089..684163TCONS_00055390-exon-scaffold_253-1575043694:684089..684163Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1491911889:687052..687159TCONS_00055390-exon-scaffold_253-1491911889:687052..687159Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1510915933:687052..687159TCONS_00055390-exon-scaffold_253-1510915933:687052..687159Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1575043694:687052..687159TCONS_00055390-exon-scaffold_253-1575043694:687052..687159Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1491911889:687348..687538TCONS_00055390-exon-scaffold_253-1491911889:687348..687538Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1510915933:687348..687538TCONS_00055390-exon-scaffold_253-1510915933:687348..687538Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1575043694:687348..687538TCONS_00055390-exon-scaffold_253-1575043694:687348..687538Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1491911889:688523..688733TCONS_00055390-exon-scaffold_253-1491911889:688523..688733Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1510915933:688523..688733TCONS_00055390-exon-scaffold_253-1510915933:688523..688733Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1575043694:688523..688733TCONS_00055390-exon-scaffold_253-1575043694:688523..688733Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1491911889:689270..689499TCONS_00055390-exon-scaffold_253-1491911889:689270..689499Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1510915933:689270..689499TCONS_00055390-exon-scaffold_253-1510915933:689270..689499Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1575043694:689270..689499TCONS_00055390-exon-scaffold_253-1575043694:689270..689499Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1491911889:689775..690220TCONS_00055390-exon-scaffold_253-1491911889:689775..690220Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1510915933:689775..690220TCONS_00055390-exon-scaffold_253-1510915933:689775..690220Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1575043694:689775..690220TCONS_00055390-exon-scaffold_253-1575043694:689775..690220Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1491911889:690548..690675TCONS_00055390-exon-scaffold_253-1491911889:690548..690675Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1510915933:690548..690675TCONS_00055390-exon-scaffold_253-1510915933:690548..690675Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1575043694:690548..690675TCONS_00055390-exon-scaffold_253-1575043694:690548..690675Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1491911889:691968..692138TCONS_00055390-exon-scaffold_253-1491911889:691968..692138Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1510915933:691968..692138TCONS_00055390-exon-scaffold_253-1510915933:691968..692138Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1575043694:691968..692138TCONS_00055390-exon-scaffold_253-1575043694:691968..692138Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1491911889:692388..692676TCONS_00055390-exon-scaffold_253-1491911889:692388..692676Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1510915933:692388..692676TCONS_00055390-exon-scaffold_253-1510915933:692388..692676Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1575043694:692388..692676TCONS_00055390-exon-scaffold_253-1575043694:692388..692676Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1491911889:692889..692983TCONS_00055390-exon-scaffold_253-1491911889:692889..692983Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1510915933:692889..692983TCONS_00055390-exon-scaffold_253-1510915933:692889..692983Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1575043694:692889..692983TCONS_00055390-exon-scaffold_253-1575043694:692889..692983Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1491911889:693341..693470TCONS_00055390-exon-scaffold_253-1491911889:693341..693470Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1510915933:693341..693470TCONS_00055390-exon-scaffold_253-1510915933:693341..693470Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1575043694:693341..693470TCONS_00055390-exon-scaffold_253-1575043694:693341..693470Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1491911889:693686..694328TCONS_00055390-exon-scaffold_253-1491911889:693686..694328Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1510915933:693686..694328TCONS_00055390-exon-scaffold_253-1510915933:693686..694328Clytia hemisphaericaexon
TCONS_00055390-exon-scaffold_253-1575043694:693686..694328TCONS_00055390-exon-scaffold_253-1575043694:693686..694328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:682231..694328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.00801186	0.00708791	0.697104	0.00881412	0.00171027	0.000414573	6.57549e-08	0.000565996	0.136079	1.33939	0.00402744	0.0764516	0.0703637	1.06707e-08	0	0	0	0	2.08234e-07	8.01517e-09	0.00122825	0.000279022	9.32302e-06	2.65531e-07	9.51208e-09	3.89482e-08
Blast
[Close]
BLAST of TCONS_00055390 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 1.300e-80
Identity = 155/393 (39.44%), Postives = 244/393 (62.09%), Query Frame = 3 
Query:  102 KKSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRSTQ---KNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 1232
            +KS+F++L + Y+EE +++ E     +   LL+K+V ++ L  L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P      +   + + E E    +    ++TI +      Y G +       E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:   33 RKSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423
The following BLAST results are available for this feature:
BLAST of TCONS_00055390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP20H1.300e-8039.44Transcription factor SPT20 homolog OS=Homo sapiens... [more]
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