TCONS_00055392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055392
Unique NameTCONS_00055392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2974

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055392 ID=TCONS_00055392|Name=TCONS_00055392|organism=Clytia hemisphaerica|type=transcript|length=2974bp
aaaaatgttatcaACAGTTGATGCACTTGGATCTTCTGAAATCACTATTT
GAGCGACTTCTCAATGCTTATGTGGAGGAGAAGAAGCAACAACAAGAAAA
AGGGGATTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAG
ACGACCTTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATAT
TCACTGatgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACT
CCCCTATGAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTAC
CTCCTCTCCTTGTGGATGTTTTGGAGAGTGCTCAGGTTGATCTATTCTAT
GATGGTTGTGTCATTGTGGAGTTACGTGATTACAGACGAAGTACTCAGAA
AAACTTTGATACCACTTACATTTTATTAAAACCAACCTCACAGACCATTG
TTCGTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGAC
AAGGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTG
TTTAGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACC
ATGCCAATAAATGGAATCATAAAGGTTTACGAAGGTCAATGAAAAGATTT
TCACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCC
ACCATGTTTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTT
CCAGTAATTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATG
TGGAAACAAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTAAC
CTCACATGCAAAACTGATGGAACTACCGAAATACACAACAGATTATACGC
CAGAGAAAATCCAAGAAATTATTTTGGAAGGCGAAAAGACCAACAACCGT
TCTTATTATTGTCGTGTTACCATCCAAAGACGTGGCTCAACAGGCGAATA
TATTGGCGATCTCTACCTAGAGGAAGACCATGGGAAAACGAAGGAAGATA
CGAAGAAAGATGGGCGTGCATGCAGGTTTTCTCTGGTCAACCGAATCACA
GCGCAACGCTATTTACAACAGTTTCAAGAACTCTACACAGAAGAAGGTCG
GAAATCAgtcaaaatttcaacctttgTCGCAAACCAAGCACAAcgaaatc
aacaacaacaacagcaacaagcACAAAACAGTAACAACGCCTCACAACAA
GCCAAAACACAAgcacaacaacagcaacaacagaCTGCTCAGATCTTACA
ACAAGCTGCACACCAGGCTGCGACACAAAAGATCATTGTTTCGTCAGTTC
CGACATCCACGACACAAATGACAACCCATACCATCGTCAATCAGAATCGC
ACGTTCACTGTGGCTCAGAACCCAGTCATTTCACATGGTGGAAATACATA
CATTCTTGCAAGCTCGGCACTTCAACAATCACTTAACTTGGGATCCAATG
TTGTACCAATGTCGTTATCAAGGAATCCTTACATAGTAAATTCATCAGGA
AACCTTCAACAAGCTGTATCAACCAAAACCAACCAATCGCCAAGCAAAAT
TATTGGAGCGTCTAATGAAAATGCACAGCTAACAACAGCTTACATCCAAT
CTGTATCGGGTGCAACGATAGGAGGAACTTCACATGGTCAACTAACGGCA
GTTCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAATCA
GTTCATAGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTGCCA
CTGGGCAAATCATGCTGCAGGTACCAGGCAATCTTGTACCACTCTCTCAA
ATGACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCTGG
CATGGCTTCGGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCG
CCATGATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCATTGATC
CCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATCTT
CGTGCAAGGTCAACCAGGACAAACACAAGGACAAACTGTCATGATACAGG
GACAGCCAGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAA
GCACTGCAAGGTCAACCTGTATTCATCCAAGGTCAACCGAATGGCCAAAC
GCAGGTTGTTCAAGGTCAAGCAATCATGTTGCAGGGCAATCAAGGTGGAC
ACCAGGGCCAAGTTCAATTGATCACAACTTCAACATCAAGCGGCGGCCAA
CAACTTCAAATCGTCCCTCAAATACAAAAACAAGTAATTACAAGTTCAGC
TGGACGCACGCAATCATCTACCGCTCTCTCTGCTTTAACATCACAAGTTA
ACTTGATCCCTATGCAACAGAGTGGACAACAATATCAACCCATCGTTCAA
TTCACTACTTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGTGC
TTCTCAACCCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACCTA
CTAAACCTTCTCCCCAATCACAGTAAAACACCCCAAACCTTTTTCCATTT
CACATCTGTATGATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGAAG
TGTTCTGTTCTGAATGAACTACTTTTGATATATCATCAATGGCAAAATGT
CACTTTACTAGTCTTCTTGGATTTAcgaagttttcaatttttaagtgCGG
CATACATAGTCATAATAATGATTTCAttgtgaaaacattttttctgttgc
aGGTGTTGTATAGTTTAAGTTACAATCTCTTTTGTATATCACCAAATCTC
TTCTGCTATAAACTACTTATTATTATGGACTGTATATACTTTTTTTAACT
ACTTTTGACACAAAATTGACAACACATTTAAATGTTTCTTTAATAATCTT
Aggatattcaaaaatttttagaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:682241..694328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055392 ID=TCONS_00055392|Name=TCONS_00055392|organism=Clytia hemisphaerica|type=transcript|length=12088bp|location=Sequence derived from alignment at scaffold_253:682241..694328+ (Clytia hemisphaerica)
aaaaatgttatcaACAGTTGATGCACTTGGATCTTCTGTAAGTCTATTTA
CTACAGTATGATAAAACTTAGAAAGTTTCTGATTTTAATCATTAATTCTC
TTTTTCCCTAATAATAACAATTACGGGTTTTCAATTTAGGATCCATTCAA
TATGATGGTGAAAGATAtgccagattttgaaaaacctNTGTGCTGTATAA
CGACATTATAATTTCCTTAAAGCTTTTTTGTATGAAACTTTGACTCTTCG
CTCCACGAAAGCTTTAACCTTCAAAATTGAAGTAATTTACTCAAAAAAGA
ATCCTATTTCTAGAAAATACAGTTTATTTtgtaatatatataatatagtG
GTAGTATACGATAGCAATAATATTGTGATAATTGTAATGATTTCTATTAT
AtaagtttttatttatgatatttAGTAATCCCAACTTTAGTTTAATATTA
TCTtatgatttttcagaaatacatttttcaaaatttttttttgtaacctA
AAGTTGATTCTTCAGCTAGTTTCTTTGTCAATAAAAGTCGTAAACTAACC
GTCTTGTATTTCATCTTAGAATCTGATAGAATACAATAATGacaatataa
aataaacaaataaaaatgttatcaACAGTTGATGCACTTGGATCTTCTGT
AAGTCTATTTACTACAGTATGATAAAACTTAGAAAGTTTCTGATTTTAAT
CATTAATTCTCTTTTTCCCTAATAATAACAATTACGGGTTTTCAATTTAG
GATCCATTCAATATGATGGTGAAAGATAtgccagattttgaaaaacctgC
CTTGAAGTGAGTATAataacataaaaaaatattttgattgtgTTATTAAC
TATGCTACAAATACAAGGTGTTGTGAATTTATTTGCTGTATTTTGAAACC
TCTGttagaaagaaaaaatcagtcccatttattgactttttaaaattttt
atacaaatttgatTTAGTGGAGTGCTGAATAAGTTTTTTGAGAGAAATAA
ATTTGGGAGATGGTtgggaaaaagatttttgatgggaattcattttggca
atttttggtcaaaaatctTCATTAGATATTCTCATTAAAATCACATTATT
CATATAGGAAATCACTATTTGAGCGACTTCTCAATGCTTATGTGGAGGAG
AAGAAGCAACAACAAGAAAAAGGGGTAAACTAGCAATTAAAATAAGCTTT
TTTTTCTCCATAGTATATGGGTTGATATCAAAATATCCCATCATGTTTTA
TTCCACCATGGTATGTGATATAGTGTTATAAGCTTATTAAAGTTTATAAG
AATGAAAGTGCACTTTTTccaatctttttgaaatatgataaacAATAGAT
ATTACATTGAACAACTACTGAAATTCAGTATGAAATAATATTGAaacact
tttatttttccttaaGGATTTCAACAAGGAGTCCATGCTTCTTCAAAAGA
TAGTCAAGGAAGACGACCTTGGTGTTCTGATTGTCAATCTGTATCCTGGT
AGTGATGGATATTCACTGatgttgaaaaagaaagatgGAAGTGATGTGGA
GACGTATAAACTCCCCTATGAGGTAATTTGTATTAGGTAATTACATAGTC
TTTAAGGGGTAGAACATTATGACATATCTGTAAAATCCTAATTTAGTGAG
GTTTTGCTAAATATGAGAGGATACTTAGATCCATGTGACATTATTTTGCT
AATGAAATTACTTGAAACTGAAGAGGATAAAGCCTGAGTCATTATTATTG
TTTACATTGAAATgagtgaaaaatataaaaatacttcTGGTTTTGAAATC
ATCATGTCAATCATTGATTTGTTTCCTGATTATTATTTACCTTTATAGGA
AAGTGAATTCTTAGATTACTTGGATACACAAGAACTACCTCCTCTCCTTG
TGGATGTTTTGGAGAGTGCTCAGGTTTGTAGGTCCATCACAACAACATAC
TTAACGAAGTTGGAATCGTACATAATGTCAGCTTTGTCAAGCAGAATCCT
CTCAAATTTTAGATGATCgtgctattcatgatattataccaccctaaATA
TTTTCCCAAACAAAGGGTATTGGTTTTCAAATattagaagctgaaaaccc
acttttCTTGGTATTTTGTACCTTCCCTACAATTTCATGCACCTCGCTTT
TAAAGAATAAGCTCTAGtctagacggccgactttctgtcctgcctattct
aattgttagtgTAGGCAGAAAGCGTAcacaaagttggcagttaaaatctt
tgcttggaaaagattgaaagaagtcattgcgttgacgtcaaaaaagggca
atgcattgactttagacagcccactttattaagcccactttaattcacaa
ttagaataggcagggcgaaaagtgggccgtctaaactagagctaacaTCC
ACCTGTTTGttattcttttgaaaagaattagAAATTAGAAATGTTAAAGA
GACTGAAATCCTATCAccaaatttttgcttttcaACTGCCTTCAGAACTC
tcattttttcattgtttattactttttgataaaattttatacTACAGAAA
ATTAAATATATCCCTATGTAACGATGTTAAGAAATTCTTTGTTTTCCATG
AATAGGTTGATCTATTCTATGATGGCTGTGTCATTGTGGAGTTACGTGAT
TACAGAAGAAGTACTCAGAAAAACTTTGATACCACCTACATTTTATTAAA
ACCAACCTCACAGGTAAGCAGTATTTTGTTTAAAGTTGTATTTATTTCTC
TTCAGGAACAAACTCCTTTTAATACACATTTGTTCTCTTACTTGGttgta
gattttattttcattgaagCATTTTCCAACTGATTTTGGTCATAAGAGTA
CTGTACTATGTTTAGTGTAAACTACCTATATCTAATATATTTGTCTCTCT
GAAATCTTTGTAGACCATTGTTCGTGATGTAAACTCATTGATGTCAGACC
CGAAATGGAGTAACGAAGACAAGGCCAAACTAGAATCTCAATTAGTTTTA
GCTATGCAACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTCTTTACAC
TGCCAACAAAATACAACACCATGCCAATAAATGGAATCATAAAGGTTTAC
GAAGGTAAACACCAATGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGA
TAGGCAATGACAAACCCAATGTCACTACCAATAAATAAATCTTACCTGAT
TAAACATGAACCTAATCAATGTTTTAACACTATTCAGCTAGCATATTATC
CAGTATTATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCAC
AGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCACCA
TGTTTGAAGCTGTTAGATTTCATCAAACAAAACAAANgaaaaatataaaa
atacttcTGGTTTTGAAATCATCATGTCAATCATTGATTTGTTTCCTGAT
TATTATTTACCTTTATAGGAAAGTGAATTCTTAGATTANTTAAAGTTTAT
AAGAATGAAAGTGCACTTTTTccaatctttttgaaatatgataaacAATA
GATATTACATTGAACAACTACTGAAATTCAGTATGAAATAATATTGAaac
acttttatttttccttaaGGATTTCAACAAGGAGTCCATGCTTCTTCAAA
AGATAGTCAAGGAAGACGACCTTGGTGTTCTGATTGTCAATCTGTATCCT
GGTAGTGATGGATATTCACTGatgttgaaaaagaaagatgGAAGTGATGT
GGAGACGTATAAACTCCCCTATGAGGTAATTTGTATTAGGTAATTACATA
GTCTTTAAGGGGTAGAACATTATGACATATCTGTAAAATCCTAATTTAGT
GAGGTTTTGCTAAATATGAGAGGATACTTAGATCCATGTGACATTATTTT
GCTAATGAAATTACTTGAAACTGAAGAGGATAAAGCCTGAGTCATTATTA
TTGTTTACATTGAAATgagtgaaaaatataaaaatacttcTGGTTTTGAA
ATCATCATGTCAATCATTGATTTGTTTCCTGATTATTATTTACCTTTATA
GGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTACCTCCTCTCC
TTGTGGATGTTTTGGAGAGTGCTCAGGTTTGTAGGTCCATCACAACAACA
TACTTAACGAAGTTGGAATCGTACATAATGTCAGCTTTGTCAAGCAGAAT
CCTCTCAAATTTTAGATGATCgtgctattcatgatattataccaccctaa
ATATTTTCCCAAACAAAGGGTATTGGTTTTCAAATattagaagctgaaaa
cccacttttCTTGGTATTTTGTACCTTCCCTACAATTTCATGCACCTCGC
TTTTAAAGAATAAGCTCTAGtctagacggccgactttctgtcctgcctat
tctaattgttagtgTAGGCAGAAAGCGTAcacaaagttggcagttaaaat
ctttgcttggaaaagattgaaagaagtcattgcgttgacgtcaaaaaagg
gcaatgcattgactttagacagcccactttattaagcccactttaattca
caattagaataggcagggcgaaaagtgggccgtctaaactagagctaaca
TCCACCTGTTTGttattcttttgaaaagaattagAAATTAGAAATGTTAA
AGAGACTGAAATCCTATCACCAAATTTTGCTTTTCAACTGCCTTCAGAAC
TCtcattttttcattgtttattactttttgataaGATTTTATACTACAGA
AAATTAAATATATTCCTATGTAACGATCGATGTTAAGAAATTCTTTGTTT
TCCATGAATAGGTTGATCTATTCTATGATGGTTGTGTCATTGTGGAGTTA
CGTGATTACAGACGAAGTACTCAGAAAAACTTTGATACCACTTACATTTT
ATTAAAACCAACCTCACAGGTAAGCAGTGTTGTGTTTATTTCTCTTCAGG
AACAAACTCCTTTTAATACACATTTGTTCTCTTACTTGGttgtagatttt
attttcattgaagCATTTTCCAACTGATTTTGGTCATAAGAGTACTGTAC
TATGTTTAGTGTAAACTACCTATATCTAATATATTTGTCTCTCTGAAATC
TTTGTAGACCATTGTTCGTGATGTAAACTCATTGATGTCAGACCCGAAAT
GGAGTAACGAAGACAAGGCCAAACTAGAATCTCAATTAGTTTTAGCTATG
CAACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTCTTTACACTGCCAA
CAAAATACAACACCATGCCAATAAATGGAATCATAAAGGTTTACGAAGGT
AAACACCAATGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCA
ATGACAAACCCAATGTCACTACCAATAAATAAATCTTACCTGATTAAACA
TGAACCTAATCAATGTTTTAACACTATTCAGCTAGCATATTATCCAGTAT
TATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCT
ACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCACCATGTTTG
AAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTTCCAGTAATTC
TTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATGTGGAAACAAA
GACAACTCAACCTATCTGTGCCATCGAAAATAGACGTTAGTTATTCTTTT
TTATACATTCTAACTTCACTATACCATACACCtcctcacagacccactgg
gactccttcccactggaaaaattggcctaaATATCGTCcctagtggaaaa
ttatacactTAATTTGTATCCCAACTAAAAATAATCCAATGAACTAATCC
CCACTACTTATATCATGCTATTTTCTatcctcactgaattttctgactta
aaaacaatggaatttaaatccaCAGTCATAAAAGTATAGGAATATCGATC
CCCAACgaatttcagtccgttatttttacccccactggctgaaaaaatcc
cacccccttctcacacacccgagaagggggtgtatcatttAATACCGATT
CTTCATATCTCACGGCTTAAAGAGCTCAAAGTATGAACTAATCATGAACT
AACAGTGACTCCTTGCANGGATTCAGTGTTAGTTCAGTTCAAGACTTTCT
GATAGGCAATGACAAACCCAATGTCACTACCAATAAATAAATCTTACCTG
ATTAAACATGAACCTAATCAATGTTTTAACACTATTCAGCTAGCATATTA
TCCAGTATTATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGATTTTC
ACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCAC
CATGTTTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTTCC
AGTAATTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATGTG
GAAACAAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTTAGTT
ATTCTTTTTTATACATTCTAACTTCACTATACCATACACCtcctcacaga
cccactgggactccttcccactggaaaaattggcctaaATATCGTCccta
gtggaaaattatacactTAATTTGTATCCCAACTAAAAATAATCCAATGA
ACTAATCCCCACTACTTATATCATGCTATTTTCTatcctcactgaatttt
ctgacttaaaaacaatggaatttaaatccaCAGTCATAAAAGTATAGGAA
TATCGATCCCCAACgaatttcagtccgttatttttacccccactggctga
aaaaatcccaccgggtgtgtgagaagggggtgtatcatttAATACCGATT
CTTCATATCTCACGGCTTAAAGAGCTCAAAGTATGAACTAATCGTGAACT
AACAATGACTCCTTGCAAACAGTATTTGTCTATCATCGTTAAAAGTTTCG
ATGGTGGTCGAAAGGAATAAGTTAtttgatatttcaattttagtttaaaC
CACGACTCTCATTTTACAAACTCTTTTAGGTAACCTCACATGCAAAACTG
ATGGAACTACCGAAATACACAACAGATTATACGCCAGAGAAAATCCAAGA
AATTATTTTGGAAGGCGAAAAGACCAACAACCGTTCTTATTATTGTCGTG
TTACCATCCAAAGACGTGGCTCAACAGGCGAATATATTGGCGATCTCTAC
CTAGAGGAAGACCATGGGAAAACGAAGGAAGATACGAAGAAAGATGGGCG
TGCATGCAGGTTTGTCTTTTTTGTTAATTACCTTAGAGAGACTTGGACGG
TGTTTAGAAAACACCCATGAGGACAGATAGTCTAGAATATGTCAACTCAA
ATGCTGTCTTGACTTCAAAAGTTATGGAAACCTTTAGGATCGTTATTTGA
CCTGACAGATTTGTTTTATTTGTAGAATTTTTCCTGGTACCTTAGGTTAT
GGAGTTCAATTCTATAGTTAGATCTATTTATCAAGCTTTGTATCATTtgg
tttttatcattttattttacattcTTTTCGAAAGGTTTTCTCTGGTCAAC
CGAATCACAGCGCAACGCTATTTACAACAGTTTCAAGAACTCTACACAGA
AGAAGGTCGGAAATCAgtcaaaatttcaacctttgTCGCAAACCAAGCAC
AAcgaaatcaacaacaacaacagcaacaagcACAAAACAGTAACAACGCC
TCACAACAAGCCAAAACACAAgcacaacaacagcaacaacagaCTGCTCA
GATCTTACAACAAGCTGCACACCAGGCTGCGACACAAAAGATCATTGTTT
CGTCAGTTCCGACATCCACGACACAAATGACAACCCATACCATCGTCAAT
CAGAATCGCACGTTCACTGTGGCTCAGAACCCAGTCATTTCACATGGTGG
AAATACATACATTCTTGCAAGCTCGGCACTTCAACAATCACTTAACTTGG
GATCCAATGTTGTACCAATGTCGTTATCAAGTTCGTTTTTTGAGTTTTAC
TTAATATCTTTCTTGTGTCTCTACTAAGATTTTCTCATCTAAgattttct
ctatttttcgCTTCTAGAATAGTTCCTCTGTTCCACATCCAAAATCTTAT
ACAACATAACCAGTAAACTCTCTTTTTTCTCTCTACATGAGTTTACATAA
CTCAAACGCCAAGTAAGGACAACCCAGTAACTCTTCGAGTTGCAGAGTAA
AAAATCAATACCTTAAGGGGTCAGAAAGAATGTTTCGACTACATTGAAAT
AATGTGCGAGTTATGAAGAGATGCTTTAACATTCAATTTAATTATTCAAT
CTTCTAGGGAATCCTTACATAGTAAATTCATCAGGAAACCTTCAACAAGC
TGTATCAACCAAAACCAACCAATCGCCAAGCAAAATTATTGGAGCGTCTA
ATGAAAATGCACAGCTAACAACAGCTTACATCCAAGTAACTTCTCATAAA
TTGATTCTTCCTTTTTTAATTCCAATTATCACCCAAGGGTGTTTAATTTT
GAGCACCATCTAGATTACTTCTGATTGACACGACCATTCTCAAACCGCTC
AACTCGTAATACAAATGCTTGTTCAGTTAGCACTAATCATTTTCATACAA
CGATAAATATTGTTTTGCTTCAGTCTGTATCGGGTGCAACGATAGGAGGA
ACTTCACATGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGGAAACAA
TGTCAGTTTGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCATCTCCAC
AAACAATACGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAGGTACAT
gatcaaatcttttttgttggaataataatattttgcaaaaagtATCAAGT
TATTGACTCTAGTTGGTCTAAGTTGTCTTTGCTCCAACTAATTTTATTTG
GCATTTCTTTAATAGTGTGAATTGAGCTCTGGTTCTGGTTTTCCTGGATA
TTAAATTGTATGTCATCCAATACcttacttatttttcaaagtattgtaat
tttaaagcttaaaagtatttgttgtttttgtaaacTTTCCAGGTACCAGG
CAATCTTGTACCACTCTCTCAAATGACCAGAGTAGCTGGTGGACCACAAA
AGGGACAAATTCCTGGTGCTGGCATGGCTTCGGTTATGGTCCACGGGAAG
CAAGTCATGGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTACCTTCAT
ACCTAACCAAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCA
TCATTCAAGGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAACACAA
GGACAAACTGTCATGATACAGGGACAGCCAGGTAACTTCTTGACCTTTCT
GTGCTCCTTTTTATTCAGATAAAtcgtaatttgaaatttgaaaactcTGT
GATAAAATGGGATTTCTAGCATTACTTATTGAAATTATTTGATAAGCATA
AGCAGTTACCATCTCTTCCTCGGCATATTTTTTTCTCGTTGTTCATTTCA
ATATCCAACCCGTAGTAACTCGTTTCGAGCTGTATAATTTTGTTTGACTT
AGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAGGCACTGC
AAGGTCAACCTGTATTCATCCAAGGTCAACCGAANGACCATTCTAAAACC
GCTCAACTCGTAATACAAATGCTTGTTCAGTTAGCACTAATCATTTTCAT
ACAACGATAAATATTGTTTTGCTTCAGTCTGTATCGGGTGCAACGATAGG
AGGAACTTCACATGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGGAA
ACAATGTCAGTTTGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCATCT
CCACAAACAATACGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAGGT
ACatcatcaaatcttttttgttggaataacaatattttgcaaaatgtaTC
AAGTTATTGACTCTAGTTGGTCTAAGTTGTCTTTGTTCCAACTGATTTTA
TTTGGCATTTCTTTAATACTGTGAATTGGGCTCTGGTTCTGGTTTTCCTG
GATATTAAATTGTATGTCATCCAATACcttacttatttttcaaagtattg
taattttaaagcttaaagctatttgttgtttttgtaaacTTTTCCAGGTA
CCAGGCAATCTTGTACCACTCTCTCAAATGACCAGAGTAGCTGGTGGACC
ACAAAAGGGACAAATTCCTGGTGCTGGCATGGCTTCAGTTATGGTCCACG
GGAAGCAAGTCATGGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTACC
TTCATACCTAACCAAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAGAC
AGCCATCATTCAAGGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAA
CACAAGGACAAACTGTCATGATACAGGGACAGCCAGGTAACTTCTTGACC
TTTCTGTGCTCCTTTTTATTCAGATAAatcgtaatttttgaaatttgaaa
actcTGTGATAAAATGGGATTTCTAGCATTACTTATTGAAATTATTTGAT
AAGCATAAGCAGTTACCAACTCTTCCTCGGCATATTTTTTTCTCGTTGTT
CCAACCCGTAGTAACTCGTTTCGAGCTGTATAATTTTGTTTGACTTAGGA
CAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAAGCACTGCAAGG
TCAACCTGTATTCATCCAAGGTCAACCGAATGGCCAAACGCAGGTAAGCT
ATTCAACATTTAAATAACAGTTGACAGTTTCAAATGATTAATATGGTGAA
AATATTAGTAGCTATTTAGTACTCTACTTTTTAATGTATTTTATAAATat
tatttgctttttctcataagGTACACCATAATATACACTGGTAGCGTTTT
TCCAATTTATTACCAACGAATTTCTTTTACTGTACACTTGTATGATAAAA
AAGGCGTCGAGTAAGATATATACTTCGGTAATGTCAAGACGAAGCTTCAT
TGCATATTGTTTGTGATTGTAGTTCATGACGAAATTATAGCCATTGTCGG
AGTTCAATCACTATTCAAAGTATTTTTCACCCTTTCTTCTTCCTCTACAG
GTTGTTCAAGGTCAAGCAATCATGTTGCAGGGCAATCAAGGTGGACACCA
GGGCCAAGTTCAATTGATCACAACTTCAACATCAAGCGGCGGCCAACAAC
TTCAAATCGTCCCTCAAATACAAAAACAAGGTATAACTCGCCCATTTTCA
TCTTTCTATAATAATAGTACCGGAGCTTtttgtatttgtatttttttgta
atgaaactttatcaaatgcaaacttaaaatttacttttaagATTTACAAT
ATTAGACCCTGTTAGATTTTTTGCCCACGTCTGAAAGATCGTTGTAAAAG
ACCTTACAAAAACACTTATTATTCTTGATATTATTCTTATTTCAGCAGTA
ATTACAAGTTCAGCTGGACGCACGCAATCATCTACCGCTCTCTCTGCTTT
AACATCACAAGTTAACTTGATCCCTATGCAACAGAGTGGACAACAATATC
AACCCATCGTTCAATTCACTACTTCCGCCCAACCCCGCCCTGTTCAACAG
AGGCGTAAAAGTGCTTCTCAACCCAACGCAGCGGGTGGTGGGCGGAAGCG
TGCCCCTGCACCTACTAAACCTTCTCCCCAATCACAGTAAAACACCCCAA
ACCTTTTTCCATTTCACATCTGTATGATTCTCTTACCTTTAATTCCGCCT
AATTGATCTAGAAGTGTTCTGTTCTGAATGAACTACTTTTGATATATCAT
CAATGGCAAAATGTCACTTTACTAGTCTTCTTGGATTTAcgaagttttca
atttttaagtgCGGCATACATAGTCATAATAATGATTTCAttgtgaaaac
attttttctgttgcaGGTGTTGTATAGTTTAAGTTACAATCTCTTTTGTA
TATCACCAAATCTCTTCTGCTATAAACTACTTATTATTATGGACTGTATA
TACTTTTTTTAACTACTTTTGACACAAAATTGACAACACATTTAAATGTT
TCTTTAATAATCTTAggatattcaaaaatttttagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034875XLOC_034875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055392-exon-scaffold_253-1491911889:682241..682277TCONS_00055392-exon-scaffold_253-1491911889:682241..682277Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1510915933:682241..682277TCONS_00055392-exon-scaffold_253-1510915933:682241..682277Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1575043694:682241..682277TCONS_00055392-exon-scaffold_253-1575043694:682241..682277Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1491911889:683348..683414TCONS_00055392-exon-scaffold_253-1491911889:683348..683414Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1510915933:683348..683414TCONS_00055392-exon-scaffold_253-1510915933:683348..683414Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1575043694:683348..683414TCONS_00055392-exon-scaffold_253-1575043694:683348..683414Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1491911889:685860..686015TCONS_00055392-exon-scaffold_253-1491911889:685860..686015Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1510915933:685860..686015TCONS_00055392-exon-scaffold_253-1510915933:685860..686015Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1575043694:685860..686015TCONS_00055392-exon-scaffold_253-1575043694:685860..686015Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1491911889:686292..686366TCONS_00055392-exon-scaffold_253-1491911889:686292..686366Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1510915933:686292..686366TCONS_00055392-exon-scaffold_253-1510915933:686292..686366Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1575043694:686292..686366TCONS_00055392-exon-scaffold_253-1575043694:686292..686366Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1491911889:687052..687159TCONS_00055392-exon-scaffold_253-1491911889:687052..687159Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1510915933:687052..687159TCONS_00055392-exon-scaffold_253-1510915933:687052..687159Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1575043694:687052..687159TCONS_00055392-exon-scaffold_253-1575043694:687052..687159Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1491911889:687348..687538TCONS_00055392-exon-scaffold_253-1491911889:687348..687538Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1510915933:687348..687538TCONS_00055392-exon-scaffold_253-1510915933:687348..687538Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1575043694:687348..687538TCONS_00055392-exon-scaffold_253-1575043694:687348..687538Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1491911889:687715..687925TCONS_00055392-exon-scaffold_253-1491911889:687715..687925Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1510915933:687715..687925TCONS_00055392-exon-scaffold_253-1510915933:687715..687925Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1575043694:687715..687925TCONS_00055392-exon-scaffold_253-1575043694:687715..687925Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1491911889:689270..689499TCONS_00055392-exon-scaffold_253-1491911889:689270..689499Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1510915933:689270..689499TCONS_00055392-exon-scaffold_253-1510915933:689270..689499Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1575043694:689270..689499TCONS_00055392-exon-scaffold_253-1575043694:689270..689499Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1491911889:689775..690220TCONS_00055392-exon-scaffold_253-1491911889:689775..690220Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1510915933:689775..690220TCONS_00055392-exon-scaffold_253-1510915933:689775..690220Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1575043694:689775..690220TCONS_00055392-exon-scaffold_253-1575043694:689775..690220Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1491911889:690548..690675TCONS_00055392-exon-scaffold_253-1491911889:690548..690675Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1510915933:690548..690675TCONS_00055392-exon-scaffold_253-1510915933:690548..690675Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1575043694:690548..690675TCONS_00055392-exon-scaffold_253-1575043694:690548..690675Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1491911889:690864..691034TCONS_00055392-exon-scaffold_253-1491911889:690864..691034Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1510915933:690864..691034TCONS_00055392-exon-scaffold_253-1510915933:690864..691034Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1575043694:690864..691034TCONS_00055392-exon-scaffold_253-1575043694:690864..691034Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1491911889:691283..691571TCONS_00055392-exon-scaffold_253-1491911889:691283..691571Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1510915933:691283..691571TCONS_00055392-exon-scaffold_253-1510915933:691283..691571Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1575043694:691283..691571TCONS_00055392-exon-scaffold_253-1575043694:691283..691571Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1491911889:692889..692983TCONS_00055392-exon-scaffold_253-1491911889:692889..692983Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1510915933:692889..692983TCONS_00055392-exon-scaffold_253-1510915933:692889..692983Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1575043694:692889..692983TCONS_00055392-exon-scaffold_253-1575043694:692889..692983Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1491911889:693341..693470TCONS_00055392-exon-scaffold_253-1491911889:693341..693470Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1510915933:693341..693470TCONS_00055392-exon-scaffold_253-1510915933:693341..693470Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1575043694:693341..693470TCONS_00055392-exon-scaffold_253-1575043694:693341..693470Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1491911889:693689..694328TCONS_00055392-exon-scaffold_253-1491911889:693689..694328Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1510915933:693689..694328TCONS_00055392-exon-scaffold_253-1510915933:693689..694328Clytia hemisphaericaexon
TCONS_00055392-exon-scaffold_253-1575043694:693689..694328TCONS_00055392-exon-scaffold_253-1575043694:693689..694328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:682241..694328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	8.89958e-06	0.00254193	0.00456914	1.68448e-05	3.48183e-10	0.958823	1.02495e-06	0	6.9704e-05	0	0	0	0	0	0	0	0	0	0	0	0.0677037	0.476137	0	0	0	0
Blast
[Close]
BLAST of TCONS_00055392 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 280.026 bits (715), Expect = 2.995e-80
Identity = 155/392 (39.54%), Postives = 243/392 (61.99%), Query Frame = 3 
Query:   39 KSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRST---QKNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 1166
            KS+F++L + Y+EE +++ E     +   LL+K+V ++ L  L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P      +   + + E E    +    ++TI +      Y G +       E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:   34 KSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423
The following BLAST results are available for this feature:
BLAST of TCONS_00055392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP20H2.995e-8039.54Transcription factor SPT20 homolog OS=Homo sapiens... [more]
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