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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055435 ID=TCONS_00055435|Name=TCONS_00055435|organism=Clytia hemisphaerica|type=transcript|length=730bp
caaatttttttaacaaagatttTGGTAGATAGGAAAGAAGAAACGATAAA
CTCATTTTCCTTGATTGTGACTTGTAGGCTTCAACATTTGTTTATATCGA
TATATCTCACAATGTTGGCCTCACCATTGTTTTTATATCATCTTATATTA
ATATCATGGAGTCTAAGAGGAGAAGCATCATTTACCGGTTGGAGCCAACC
CAAACAAAAGTCAATTCGCACAAACAAAGGTTCAGTAGTCAACACAACCT
ATGCTATATACAAAAGAAATCCTTTACGCTGCGCGATAAATGGATTTTAC
GAAGTAATATTTGAAAGAACCATGGCTGAGTGCGCTCAAAGTTGTACTGA
CGACAACAGGTGTTTAATGTGGTTTTTCCATAAAAATCAACACCAATGTA
AACTGTATAAATTTACTTTATATGATTTGCGACTGCGAAGTATGTACAAC
CCTCATATGACGTACATTGACAGCTTTGAGCTTAAGAATCCTTGCACAGA
GAATGCAAATTTATGTGAGCATGGGAGTTATTGTGCGGCAGATCGGCCAA
CAGAAAGCTATGAATGCAAGAACTGTTTGACACCCTTCACCGGTCAACAC
TGCAACGAAACTGCAGGCGATGATAACTTTATCAGTGCGACAACAACTGA
TGATATATTATTTGGCCGTGCGGTCTCTTGTCGTCATTTACGTCACTATA
GCAACATCCCCGATTCGGATCACACTGTCC Run BLAST on NCBI protein sequence of TCONS_00055435-protein >TCONS_00055435-protein ID=TCONS_00055435-protein|Name=TCONS_00055435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
QIFLTKILVDRKEETINSFSLIVTCRLQHLFISIYLTMLASPLFLYHLIL
ISWSLRGEASFTGWSQPKQKSIRTNKGSVVNTTYAIYKRNPLRCAINGFY
EVIFERTMAECAQSCTDDNRCLMWFFHKNQHQCKLYKFTLYDLRLRSMYN
PHMTYIDSFELKNPCTENANLCEHGSYCAADRPTESYECKNCLTPFTGQH
CNETAGDDNFISATTTDDILFGRAVSCRHLRHYSNIPDSDHTV Run BLAST on NCBI transcript from alignment at scaffold_253:882623..888498+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055435 ID=TCONS_00055435|Name=TCONS_00055435|organism=Clytia hemisphaerica|type=transcript|length=5876bp|location=Sequence derived from alignment at scaffold_253:882623..888498+ (Clytia hemisphaerica)
caaatttttttaacaaagatttTGGTAGATAGGAAAGAAGAAACGATAAA
CTCATTTTCCTTGATTGTGACTTGTAGGCTTCAACATTTGTTTATATCGA
TATATCTCACAATGTTGGCCTCACCATTGTTTTTATATCATCTTATATTA
ATATCATGGAGTCTAAGAGGAGAAGCATCATTTACCGGTTGGAGCCAACC
CAAACAAAAGTCAATTCGCACAAACAAAGGTTCAGTAGTCAACACAACCT
ATGCTATATACAAAAGAAATCCTTTACGCTGCGCGATAAATGGATTTTAC
GAAGTAATATTTGAAAGAACCATGGCTGAGTGCGCTCAAAGTTGTACTGA
CGACAACAGGTGTTTAATGTGGTTTTTCCATAAAAATCAACACCAATGTA
AACTGTATAAATTTACTTTATATGATTTGCGACTGCGAAGTATGTACAAC
CCTCATATGACGTACATTGACAGCTTTGAGCTTAAGGTAAATTCTTTATT
GCTAAATTTCGCACCCGTCCGGCTgactcaaaataaaaatatagtaCAAG
TACATGCGATATTCCATTTCAGGAAATTGAAAAGGTTAATATTGGGTGAT
GAAGTCCATCGAAAGTTTTACTTCATTCGTTCGATTTAAAGCGTGTAAAA
ACACCTTCATGATTGTATTTATCCTAATTCGCCATTTTTTCCGTTCGAAT
TAGaactttgatttctaaaaaaaatttcttctagATAACACCTGACAGTA
AGACCTTCCATATTTGTCCCGGCTTACTTTCAAACCAATCGCAAGTGTCG
GTCGCTGATGTTCTCTATAATTAGATATTTTCTGATGATAATCGAAGAGA
TAGTCAATTGTTTATTCAGATTTTCATTCTCACATTCTAGCTCAACTGGA
AGAATGACAAAAGTGAACAAAATAGGTTTCAAATAAAGCCATTATTCTAC
CATTTCAGAATCCTTGCACAGAGAATGCAAATTTATGTGAGCATGGGAGT
TATTGTGCGGCAGATCGGCCAACAGAAAGCTATGAATGCAAGAACTGTTT
GACACCCTTCACCGGTCAACACTGCAACGAAACTGCAGGCGATGGTAAGT
TTAATAAAAGTTTCTACAGCTGAGCCTCCAGAACTCAAACCTctgtctcc
ttaattcgaataTGTTTTATTTTCCCCTCACTAAACATTGCCTTATAAAC
CAGTCTTTGCAGCTCAAAAAATCCACAACTCTAGCAAATGAAAGCTCGcc
gtgtgtgttcgagttacagagatTCCACCTTATCATTTTCAACAGAAAGC
TAAGCTTCTTTCANggggggggggggttggaataaaaatatcctgggtgg
aatatttttgaaaaggaggctaatacagcagaattaggacaaaagaggga
actttccaaaaacattttcccaaaaattagtAAGGTAGGccattaggtac
ccgagagtaggccTTTCACAAACCTTCTACCGTGGTAAGTAATAACCATT
CCCCTCTAACTCTGCCTTTATAGATATATTATTTGGCCGTGCGGTCTCTT
GTCGTCATTTACGCCACTATAGCAACATCCCCGATTCGGATCACACTGTC
CAATACATACACCCTTGGAGAGATGACCGAAAAATCAAGGTGCTTTGTAA
AGGTATGTTGtattttaaagctcttttttaAAGTTTGGTTTATacaagaa
tttattatagacactggataacCAACGAGatatattttcattgatttctc
atgttctagccttgtccgcagtaatgacattattgttcactctccttcct
tcattaaacgatttttcgtaacattttaatcgtttttttcatcttaacac
agtcatttcaattcccaaatgaaaattaagtatcaaaataattgctaatt
acgtgtcgttatgacgtttccaGTTGCAAGAAAGATACCAAAAGCATGct
atgtatgaaaaattgaatgttgacaccaaaaattttcaaaatttaacctc
aataaaaccaccgatccaccacgagcctccaaaatattttcataccacgg
tgaagccaagacactcaagtgtCATATATGTCGATTTTAGCTCTTCTCGG
AAAGATGTTAGAAAGATATCGACAACTTAAAATTCTGTGTCATTTTAggc
cttttgtttgatttttcttgtctgatgatgtttttgtcacaACAGATTTA
ATACATGTATCCGTTAAGCATTTTAgcatttccaaatttttggcgAGTAA
AAGTACaacaagcaatatgctgaatggCCTACCTTACCTGATGcttaaag
ttagatagcaatgcgaaaagaaaaatgaaaaaaatcagtcagaaaatata
gcgtttagcgaaaatacacaacacaataaattcatcattgattNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNgggagagggaagggttgtagggaaat
aataaataggaagttctggtcgcaaaaatcagttttattgacaattgaat
catgcttgatggtgaacattgttatgaataatgtttttgtgtgaaaagca
tagaaatataagtaaactaaacggtgatttccggcattttcaaccggaaa
atttttttctcaaaaatcgaactcggccatgttttgagcattgcgaatgc
gcatctttctgcaaaaaatcagaaaaaactagaaatgaaaattcgagaaa
atatcaaaaaaccgatttttccgacatatttttttttcgaaaatcgggct
ccgtcacattttaggtattgtcatattgcatcagtgtgcaaaatttcata
aaacaagtgatacttttatggacctacctggttatgcatttaacacatat
ataattgatatctacgtgagcatatgaacgttaaacaatcattcagaaca
caaatagtgacgatNNNNNNNNNNNNNNNNNNNNNNNNNNaaaattagtc
gtttgtttcttataaaaaaaaacgtttagaaaccaaaatttcatgctctt
gaaatattctttcatattcaagacttcgttagcaaaaaacatccatctca
tcaaaaaattgagtaatttggctaagaacattgatgtatgcttattaatg
gtgattcttatagataaaatgcgttttttgagctgaaaagttattttttt
acaaaaatctgcttggcacatcttttacctactttcatgcaaaaagtcag
aaaaaaacaacgatccaatatttcacaaagtccaaaaaaactttttttag
ccgttttttggcccatatttgcctaaaaacatttttttcgaaaatcgggc
tccgtcacattcgagggtttatagttatgcatctttgtgcaaaaaatcat
aaagaatcaaagagccaatctcaaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCA
ACCAAAATtttatgtctaaacacacaattgcttcaaaagtaagccctcat
gagaaaaaaaaacatctatctcataaaaaaatttagtaatttgactaaga
acattaatgtaggcttattaatagtgattcttatagataaacatgcgttt
tttgagccaacaaatcttttttgcaaaaatctccctgagccaccttttac
ctatgatggtaccctactttcatgcaaaaaatcagaaaaaatcaatgatc
caatttttgacaaagtccaaaaaaaccgttatttagccgttttttggccc
aaatttgccctaaaacatttttttttcaaaaattgggctccgtcacatcc
gagggtttataattatgcatctttgtgcaaaaaatcataaagaatgaaag
agctaatctcgagaaaagctaacgtacctaagtaattgataatgtgctta
taaaaaaatatcgaatttggccagtttttctataaaaacacgcaaagcaa
ccaaaatttcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTCTCAATA
AGCGTGaagtttttctttgatttcattactttttttaGATAACTTTATCA
GTGCGACAACAACTGATGGTAAGTTTgattgaagacctctttttcaCATA
CAAATTCATTTCTGGTGTGGATCAATGCCATGTGTCTACATACTAAAAGA
GCTGTACCAATCTCCACCATTTCAATTTCACACCCTTTGAACGCCTGACA
ATTCTCTCGTATGTTGCTCTATATTGAAAAACAAGGCCTGACATAATCTC
CGAGCAGATCCCGATTACTTTACGCACGGCGCGCTCTTATACAGATATAA
TTGTTTAGAATGAATTGGTTAAAGAAGCTTGTCAGATCATCACATTTGCT
GAATCTATTTAGATTGAACTGTTATGAGACTAGGCCTGTTCCCCAAACCT
TCCACCGTGGTAAGTAAACAACATTATCCTCTAACTCTCCCTTTATAGAT
ATATTATTTGGCCGTGCGGTCTCTTGTCGTCATTTACGTCACTATAGCAA
CATCCCCGATTCGGATCACACTGTCC Coding sequence (CDS) from alignment at scaffold_253:882623..888498+ >TCONS_00055435 ID=TCONS_00055435|Name=TCONS_00055435|organism=Clytia hemisphaerica|type=CDS|length=2916bp|location=Sequence derived from alignment at scaffold_253:882623..888498+ (Clytia hemisphaerica)
caaatttttttaacaaagatttTGGTAGATAGGAAAGAAGAAACGATAAA
CTCATTTTCCTTGATTGTGACTTGTAGGCTTCAACATTTGTTTATATCGA
TATATCTCACAATGTTGGCCTCACCATTGTTTTTATATCATCTTATATTA
ATATCATGGAGTCTAAGAGGAGAAGCATCATTTACCGGTTGGAGCCAACC
CAAACAAAAGTCAATTCGCACAAACAAAGGTTCAGTAGTCAACACAACCT
ATGCTATATACAAAAGAAATCCTTTACGCTGCGCGATAAATGGATTTTAC
GAAGTAATATTTGAAAGAACCATGGCTGAGTGCGCTCAAAGTTGTACTGA
CGACAACAGGTGTTTAATGTGGTTTTTCCATAAAAATCAACACCAATGTA
AACTGTATAAATTTACTTTATATGATTTGCGACTGCGAAGTATGTACAAC
CCTCATATGACGTACATTGACAGCTTTGAGCTTAAGAATCCTTGCACAGA
GAATGCAAATTTATGTGAGCATGGGAGTTATTGTGCGGCAGATCGGCCAA
CAGAAAGCTATGAATGCAAGAACTGTTTGACACCCTTCACCGGTCAACAC
TGCAACGAAACTGCAGGCGATGATAACTTTATCAGTGCGACAACAACTGA
TGATATATTATTTGGCCGTGCGGTCTCTTGTCGTCATTTACGTCACTATA
GCAACATCCCCGATTCGGATCACACTGTCcaaatttttttaacaaagatt
tTGGTAGATAGGAAAGAAGAAACGATAAACTCATTTTCCTTGATTGTGAC
TTGTAGGCTTCAACATTTGTTTATATCGATATATCTCACAATGTTGGCCT
CACCATTGTTTTTATATCATCTTATATTAATATCATGGAGTCTAAGAGGA
GAAGCATCATTTACCGGTTGGAGCCAACCCAAACAAAAGTCAATTCGCAC
AAACAAAGGTTCAGTAGTCAACACAACCTATGCTATATACAAAAGAAATC
CTTTACGCTGCGCGATAAATGGATTTTACGAAGTAATATTTGAAAGAACC
ATGGCTGAGTGCGCTCAAAGTTGTACTGACGACAACAGGTGTTTAATGTG
GTTTTTCCATAAAAATCAACACCAATGTAAACTGTATAAATTTACTTTAT
ATGATTTGCGACTGCGAAGTATGTACAACCCTCATATGACGTACATTGAC
AGCTTTGAGCTTAAGAATCCTTGCACAGAGAATGCAAATTTATGTGAGCA
TGGGAGTTATTGTGCGGCAGATCGGCCAACAGAAAGCTATGAATGCAAGA
ACTGTTTGACACCCTTCACCGGTCAACACTGCAACGAAACTGCAGGCGAT
GATAACTTTATCAGTGCGACAACAACTGATGATATATTATTTGGCCGTGC
GGTCTCTTGTCGTCATTTACGTCACTATAGCAACATCCCCGATTCGGATC
ACACTGTCcaaatttttttaacaaagatttTGGTAGATAGGAAAGAAGAA
ACGATAAACTCATTTTCCTTGATTGTGACTTGTAGGCTTCAACATTTGTT
TATATCGATATATCTCACAATGTTGGCCTCACCATTGTTTTTATATCATC
TTATATTAATATCATGGAGTCTAAGAGGAGAAGCATCATTTACCGGTTGG
AGCCAACCCAAACAAAAGTCAATTCGCACAAACAAAGGTTCAGTAGTCAA
CACAACCTATGCTATATACAAAAGAAATCCTTTACGCTGCGCGATAAATG
GATTTTACGAAGTAATATTTGAAAGAACCATGGCTGAGTGCGCTCAAAGT
TGTACTGACGACAACAGGTGTTTAATGTGGTTTTTCCATAAAAATCAACA
CCAATGTAAACTGTATAAATTTACTTTATATGATTTGCGACTGCGAAGTA
TGTACAACCCTCATATGACGTACATTGACAGCTTTGAGCTTAAGAATCCT
TGCACAGAGAATGCAAATTTATGTGAGCATGGGAGTTATTGTGCGGCAGA
TCGGCCAACAGAAAGCTATGAATGCAAGAACTGTTTGACACCCTTCACCG
GTCAACACTGCAACGAAACTGCAGGCGATGATAACTTTATCAGTGCGACA
ACAACTGATGATATATTATTTGGCCGTGCGGTCTCTTGTCGTCATTTACG
TCACTATAGCAACATCCCCGATTCGGATCACACTGTCcaaatttttttaa
caaagatttTGGTAGATAGGAAAGAAGAAACGATAAACTCATTTTCCTTG
ATTGTGACTTGTAGGCTTCAACATTTGTTTATATCGATATATCTCACAAT
GTTGGCCTCACCATTGTTTTTATATCATCTTATATTAATATCATGGAGTC
TAAGAGGAGAAGCATCATTTACCGGTTGGAGCCAACCCAAACAAAAGTCA
ATTCGCACAAACAAAGGTTCAGTAGTCAACACAACCTATGCTATATACAA
AAGAAATCCTTTACGCTGCGCGATAAATGGATTTTACGAAGTAATATTTG
AAAGAACCATGGCTGAGTGCGCTCAAAGTTGTACTGACGACAACAGGTGT
TTAATGTGGTTTTTCCATAAAAATCAACACCAATGTAAACTGTATAAATT
TACTTTATATGATTTGCGACTGCGAAGTATGTACAACCCTCATATGACGT
ACATTGACAGCTTTGAGCTTAAGAATCCTTGCACAGAGAATGCAAATTTA
TGTGAGCATGGGAGTTATTGTGCGGCAGATCGGCCAACAGAAAGCTATGA
ATGCAAGAACTGTTTGACACCCTTCACCGGTCAACACTGCAACGAAACTG
CAGGCGATGATAACTTTATCAGTGCGACAACAACTGATGATATATTATTT
GGCCGTGCGGTCTCTTGTCGTCATTTACGTCACTATAGCAACATCCCCGA
TTCGGATCACACTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055435-exon-scaffold_253-1491911889:882623..883108 | TCONS_00055435-exon-scaffold_253-1491911889:882623..883108 | Clytia hemisphaerica | exon |
| TCONS_00055435-exon-scaffold_253-1510915933:882623..883108 | TCONS_00055435-exon-scaffold_253-1510915933:882623..883108 | Clytia hemisphaerica | exon |
| TCONS_00055435-exon-scaffold_253-1575043694:882623..883108 | TCONS_00055435-exon-scaffold_253-1575043694:882623..883108 | Clytia hemisphaerica | exon |
| TCONS_00055435-exon-scaffold_253-1491911889:883581..883716 | TCONS_00055435-exon-scaffold_253-1491911889:883581..883716 | Clytia hemisphaerica | exon |
| TCONS_00055435-exon-scaffold_253-1510915933:883581..883716 | TCONS_00055435-exon-scaffold_253-1510915933:883581..883716 | Clytia hemisphaerica | exon |
| TCONS_00055435-exon-scaffold_253-1575043694:883581..883716 | TCONS_00055435-exon-scaffold_253-1575043694:883581..883716 | Clytia hemisphaerica | exon |
| TCONS_00055435-exon-scaffold_253-1491911889:888011..888040 | TCONS_00055435-exon-scaffold_253-1491911889:888011..888040 | Clytia hemisphaerica | exon |
| TCONS_00055435-exon-scaffold_253-1510915933:888011..888040 | TCONS_00055435-exon-scaffold_253-1510915933:888011..888040 | Clytia hemisphaerica | exon |
| TCONS_00055435-exon-scaffold_253-1575043694:888011..888040 | TCONS_00055435-exon-scaffold_253-1575043694:888011..888040 | Clytia hemisphaerica | exon |
| TCONS_00055435-exon-scaffold_253-1491911889:888421..888498 | TCONS_00055435-exon-scaffold_253-1491911889:888421..888498 | Clytia hemisphaerica | exon |
| TCONS_00055435-exon-scaffold_253-1510915933:888421..888498 | TCONS_00055435-exon-scaffold_253-1510915933:888421..888498 | Clytia hemisphaerica | exon |
| TCONS_00055435-exon-scaffold_253-1575043694:888421..888498 | TCONS_00055435-exon-scaffold_253-1575043694:888421..888498 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:882623..888498 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003609 | Pan_app |
Blast
The following BLAST results are available for this feature:
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