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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055441 ID=TCONS_00055441|Name=TCONS_00055441|organism=Clytia hemisphaerica|type=transcript|length=2857bp
GTTTTAATTCTCTTCCTTTTTAACTCCTTGAACATCTTCCAAATTTTTAC
TAGGGAAGGCATATTCAAGATTGACAAGTGCCTTGTCCTTGTAATCTTGA
AAAGTGGTAGATATGGATAATCAGAGATGATTTGCAAACCTGGTTTGGCC
ACCTttctggttggtattttactaGCCTGGGGCCACTTATTGCTTCTTAA
TAGACTGGATATTGTGCCTGGTATGGCACAAAACAAATCCATACCAAATT
ATTTCCTAATATTTTTATCAtggttttgaaaactttgatggAGTTTCGAA
ATAAATTATATTGTTTTGGTCATTGGtgtttgttttgtgtttttgaaaac
GAATGCTCAAGTCTAATTGACTGGACTCAACATCAAAATGGAAAGAAGGA
AAGTTcagtcaaaaaatgaaggtaataaaaataGACGGAGAGAAAACATC
TTGGTAACAACCTAAATGATCAttcaaatcttttataaatctattcaaag
tgGCTTTTTTTATGTGCCATCATTGAGAACAAAAGAAATCATTGTTTGAA
ACCAGGTTTGTTCTATAATTgttgaaagttggagaaaattcTACCATTGC
AGAAATTTTCAACAGACAATTAATGGACGGTGTCTATCAAACAAGTTTGA
GCAAAAATCCCAATCAAGCCAAATGAATGTAAGCGAACGCGACCCCTTAT
GATGGCCAATATCCTATAAAACCATTACAAGTGTGTCTTCACCCAACCTC
TTCAAACTACAACCTTCATCCGCTTGAGTCACAAATACCAACACTTGAAG
ATTTGAAGATATCAATCTGACTATCGAggaatttgtcaaagaaatcaGTA
CACTGTCACCAACTTCAGCACCTGGACCTTATGGTTTTCCAGCTATTCTT
CAACTAAAAACAATAGATAACATTGCTCTACCACTTTCAATCATCTGGAG
AAACATACCTAACATAGGAATCactccaaaacttttaaaaactggACATA
TATCCCCAGTTTACAAGAAAGTGAATCAAGGTCTTGCTGAAAACTATAGA
CCCGTTGCCATCCCACGTTTCAAAGGTCTTTAAAAAATTGTGCGAGCCAA
GATGCAGAATCATCTAGAAGAAAACAATCTGTATAACAATAATCAACATG
GCTTTAGGAAAGGCCACTTATGTCTTAGTCAATTGCTTCAACACACCAAA
AGACTGATTCATTACCTTGAGAATGGAAACAACATTGAAGTTATCTATTT
TGACTTTTAGTAAAGCTTTTGATAGAGTAGATCATCACAATTTTGTTGCA
CAAGCTTcagaaaaatggcaaaaacggTAAACTCCTTGAATGGATCAGAT
CTTTTAAGACTCATCGAACCCAGAGAGTTTCATTAACTCAACCTTGTCCT
CAGAAATAGAGGTTATTTCATGTGTGCCACAAGGATGTGCTGGGACCGCT
ATTGTTCCCAATCATGATTCACGATATTGATAACAACATCATTCTATTTT
GGCATTGTTTGCAGACACCCGattgatgaaaaaaatatccaaaCCGGAGG
ATGTTTCTGTCCATTTATAGACAGTGGCTAGATCATTTTATAGATGATTT
ATCATCTAGACACTGTCTATAAATGGACAGAAGACAACAACATGCAACTG
AATGGTCTTAAATTTGAGCACCTTGCCTACAGGAAAAATGACGCCCTTAA
AGCAAAGTTCTCACTATTTTTATGACATAGCAACATATCAATAAAAAATA
AGGGCGAAGTTAAAGACCTTTGAGTCACCCTAGACACTCAGTTGACTTAT
GAGGAGCATATCAGCATATCcaagatcaaatttaaaaaaagtaaaaaatg
caTGGATATACCGCACATTCAaatcaaagaaaagtgaaacTATGTTAACT
TTATGGAAAGAACTAGCCATCCCTCATTTGGACTATGTTCTCAATTCTGG
TCACCCTGCTGGAAACGTGGTCTTGTCCAGCAACTGGAAGAATTTCAGAA
AACATATTTACATGGTATTCTATCCCTCAGGCATCTTAATTATTGTATAC
TGTATAGCCTTGAAAGACGGAGAGAGCGTTATCAAATAATTTACACCTGG
AACGTCATTGAAGGCAACGTCTCAAATTTTAATtatgacaaaagaaaaga
aggcATTTCCTGCCATAAAAGCCAGTAAAATGTTTATACTTCGAAAccac
acgaacagagtagacgggtctcccagctaccgtaacttggtttaatatcg
acatccctcgtctaattttgacacccttctttagagaaaggattaatatg
aaagcttgaatcactgattgaaaaaggattattcctctctgaccactaag
caaagaaaaacagtttcaacccaAGTTACGGTATCATGATATTAAATACA
AAAATATCTGGAGTGGAGGGGAAGTCTTTCCTAAGAGGGCCCTCTTGGTT
CGCTTGTTCAACACCCTTGCCAGACCAATAAAAAAGAGATTTGACAAACT
GCCTCAAAGAAGTATTCAGCAAAAAACACTTAGACACCTTCTTCACAACT
GTTCCGGGCGAACCACTGCTTGCCCACTATTTCACTCTTTAGGCAAGCTT
ACTCCAACTTTCAACAGCCTCAAGGAAATGTTAAAGCATCGGACTCAACG
AGTTGGATGAGCTGCTCAATCAAGCAGAAGCCACAAATAGGTACAAATAG
GTAGGTTGTGTTCAATTGATTCCACGTTCGATTCGTTTGATTGACTCTGT
CCGGCTATATCAAAAAAACAGTAAAGAAAGATGCAAACATAATTTCTTAT
GAGTGCTGTTATAACAAGGTATACTGGTATATGTGTCCTGGTCGCTGGTG
TCGGCTG Run BLAST on NCBI transcript from alignment at scaffold_253:1012712..1015629+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055441 ID=TCONS_00055441|Name=TCONS_00055441|organism=Clytia hemisphaerica|type=transcript|length=2918bp|location=Sequence derived from alignment at scaffold_253:1012712..1015629+ (Clytia hemisphaerica)
GTTTTAATTCTCTTCCTTTTTAACTCCTTGAACATCTTCCAAATTTTTAC
TAGGGAAGGCATATTCAAGATTGACAAGTGCCTTGTCCTTGTAATCTTGA
AAAGTGGTAGATATGGATAATCAGAGATGATTTGCAAACCTGGTTTGGCC
ACCTttctggttggtattttactaGCCTGGGGCCACTTATTGCTTCTTAA
TAGACTGGATATTGTGCCTGGTATGGCACAAAACAAATCCATACCAAATT
ATTTCCTAATATTTTTATCAtggttttgaaaactttgatggAGTTTCGAA
ATAAATTATATTGTTTTGGTCATTGGtgtttgttttgtgtttttgaaaac
GAATGCTCAAGTCTAATTGACTGGACTCAACATCAAAATGGAAAGAAGGA
AAGTTcagtcaaaaaatgaaggtaataaaaataGACGGAGAGAAAACATC
TTGGTAACAACCTAAATGATCAttcaaatcttttataaatctattcaaag
tgGCTTTTTTTATGTGCCATCATTGAGAACAAAAGAAATCATTGTTTGAA
ACCAGGTTTGTTCTATAATTgttgaaagttggagaaaattcTACCATTGC
AGAAATTTTCAACAGACAATTAATGGACGGTGTCTATCAAACAAGTTTGA
GCAAAAATCCCAATCAAGCCAAATGAATGTAAGCGAACGCGACCCCTTAT
GATGGCCAATATCCTATAAAACCATTACAAGTGTGTCTTCACCCAACCTC
TTCAAACTACAACCTTCATCCGCTTGAGTCACAAATACCAACACTTGAAG
ATATCAATCTGACTATCNTTCAAAACTACGACCTTCATCCGCTTGAGTCA
CAAATACCAACACTTGAAGATATCAATCTGACTATCGAggaatttgtcaa
agaaatcaGTACACTGTCACCAACTTCAGCACCTGGACCTTATGGTTTTC
CAGCTATTCTTCAACTAAAAACAATAGATAACATTGCTCTACCACTTTCA
ATCATCTGGAGAAACATACCTAACATAGGAATCactccaaaacttttaaa
aactggACATATATCCCCAGTTTACAAGAAAGTGAATCAAGGTCTTGCTG
AAAACTATAGACCCGTTGCCATCCCACGTTTCAAAGGTCTTTAAAAAATT
GTGCGAGCCAAGATGCAGAATCATCTAGAAGAAAACAATCTGTATAACAA
TAATCAACATGGCTTTAGGAAAGGCCACTTATGTCTTAGTCAATTGCTTC
AACACACCAAAAGACTGATTCATTACCTTGAGAATGGAAACAACATTGAA
GTTATCTATTTTGACTTTTAGTAAAGCTTTTGATAGAGTAGATCATCACA
ATTTTGTTGCACAAGCTTcagaaaaatggcaaaaacggTAAACTCCTTGA
ATGGATCAGATCTTTTAAGACTCATCGAACCCAGAGAGTTTCATTAACTC
AACCTTGTCCTCAGAAATAGAGGTTATTTCATGTGTGCCACAAGGATGTG
CTGGGACCGCTATTGTTCCCAATCATGATTCACGATATTGATAACAACAT
CATTCTATTTTGGCATTGTTTGCAGACACCCGattgatgaaaaaaatatc
caaaCCGGAGGATGTTTCTGTCCATTTATAGACAGTGGCTAGATCATTTT
ATAGATGATTTATCATCTAGACACTGTCTATAAATGGACAGAAGACAACA
ACATGCAACTGAATGGTCTTAAATTTGAGCACCTTGCCTACAGGAAAAAT
GACGCCCTTAAAGCAAAGTTCTCACTATTTTTATGACATAGCAACATATC
AATAAAAAATAAGGGCGAAGTTAAAGACCTTTGAGTCACCCTAGACACTC
AGTTGACTTATGAGGAGCATATCAGCATATCcaagatcaaatttaaaaaa
agtaaaaaatgcaTGGATATACCGCACATTCAaatcaaagaaaagtgaaa
cTATGTTAACTTTATGGAAAGAACTAGCCATCCCTCATTTGGACTATGTT
CTCAATTCTGGTCACCCTGCTGGAAACGTGGTCTTGTCCAGCAACTGGAA
GAATTTCAGAAAACATATTTACATGGTATTCTATCCCTCAGGCATCTTAA
TTATTGTATACTGTATAGCCTTGAAAGACGGAGAGAGCGTTATCAAATAA
TTTACACCTGGAACGTCATTGAAGGCAACGTCTCAAATTTTAATtatgac
aaaagaaaagaaggcATTTCCTGCCATAAAAGCCAGTAAAATGTTTATAC
TTCGAAAccacacgaacagagtagacgggtctcccagctaccgtaacttg
gtttaatatcgacatccctcgtctaattttgacacccttctttagagaaa
ggattaatatgaaagcttgaatcactgattgaaaaaggattattcctctc
tgaccactaagcaaagaaaaacagtttcaacccaAGTTACGGTATCATGA
TATTAAATACAAAAATATCTGGAGTGGAGGGGAAGTCTTTCCTAAGAGGG
CCCTCTTGGTTCGCTTGTTCAACACCCTTGCCAGACCAATAAAAAAGAGA
TTTGACAAACTGCCTCAAAGAAGTATTCAGCAAAAAACACTTAGACACCT
TCTTCACAACTGTTCCGGGCGAACCACTGCTTGCCCACTATTTCACTCTT
TAGGCAAGCTTACTCCAACTTTCAACAGCCTCAAGGAAATGTTAAAGCAT
CGGACTCAACGAGTTGGATGAGCTGCTCAATCAAGCAGAAGCCACAAATA
GGTACAAATAGGTAGGTTGTGTTCAATTGATTCCACGTTCGATTCGTTTG
ATTGACTCTGTCCGGCTATATCAAAAAAACAGTAAAGAAAGATGCAAACA
TAATTTCTTATGAGTGCTGTTATAACAAGGTATACTGGTATATGTGTCCT
GGTCGCTGGTGTCGGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055441-exon-scaffold_253-1491911889:1012712..1013513 | TCONS_00055441-exon-scaffold_253-1491911889:1012712..1013513 | Clytia hemisphaerica | exon |
| TCONS_00055441-exon-scaffold_253-1510915933:1012712..1013513 | TCONS_00055441-exon-scaffold_253-1510915933:1012712..1013513 | Clytia hemisphaerica | exon |
| TCONS_00055441-exon-scaffold_253-1575043694:1012712..1013513 | TCONS_00055441-exon-scaffold_253-1575043694:1012712..1013513 | Clytia hemisphaerica | exon |
| TCONS_00055441-exon-scaffold_253-1491911889:1013575..1015629 | TCONS_00055441-exon-scaffold_253-1491911889:1013575..1015629 | Clytia hemisphaerica | exon |
| TCONS_00055441-exon-scaffold_253-1510915933:1013575..1015629 | TCONS_00055441-exon-scaffold_253-1510915933:1013575..1015629 | Clytia hemisphaerica | exon |
| TCONS_00055441-exon-scaffold_253-1575043694:1013575..1015629 | TCONS_00055441-exon-scaffold_253-1575043694:1013575..1015629 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:1012712..1015629 + |
Blast
The following BLAST results are available for this feature:
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