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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055447 ID=TCONS_00055447|Name=TCONS_00055447|organism=Clytia hemisphaerica|type=transcript|length=4754bp
TGAGCCCTGACTCAATCTCAGCGACGATCTAAAGGTGATAATTAAAAATC
TTATAGAAAGATGCAGATCAATTTATTAACACTTTTGCATCGTCATTGAG
TCAGGACCATTACAACCAAAAACTAATCAAAGGACTGTTTAAAAGGTTTT
GAAGAAAACTCTTCTAGCCTCGATCATGGAGAATGCTTACCTTAGGTACA
CGTTTCAGTCTGTTCAGATTGATGCGGACGACCAAACTCTTTGTTGGTTT
TGATTGAGCTTCATCTTCTTGATCACTAGATTCGATACGTGCCACCTTTC
GATCTGTACCACCATTCACAGCACGGGGATTCTTCCTCTTCAACGGGGAA
TCATCTCCAAGGATATCAATCTCCATATCTTCACCAACGGCGGGCGATTC
CTTATTTGATTGACGTTTCAGCTTTACAAGATTCAAAGGAATCTTCACTA
ACAAACGTTTTGGTTGCTCTTTGACGGCAATTTCTTTGACGGCAATTTCC
TTGACGACAATTTCTTTTGCGTTGTTTTGTGTTGTCATATCATTTATTTG
GTTGAACACATCGAAACAATTACCAGGACTTGGCGTATCTCTCTTTTCTG
TTTCCAAAACAGACTGTGGAATAGGAGAAGGTTGCTCTATAGGTTCTTGC
TTCACAACACTGTTTCTGCGACTTTGCTTGGATGGTTCTTTGACACGTGT
TACTATAACATCGTCTGTCGTGGAGACTGATGGTGGTTNCAAGCAAAACC
AATTTAATTGAATAAactcttttttgtcattttaaacccttaaaactaaa
gaaaacTGAGCCCTGACTCAATCTCAGCGACGATCTAAAGGTGATAATTA
AAAATCTTATAGAAAGATGCAGATCAATTTATTAACACTTTTGCATCGTC
ATTGAGTCAGGACCATTACAACCAAAAACTAATCAAAGGACTGTTTAAAA
GGTTTTGAAGAAAACTCTTCTAGCCTCGATCATGGAGAATGCTTACCTTA
GGTACACGTTTCAGTCTGTTCAGATTGATGCGGACGACCAAACTCTTTGT
TGGTTTTGATTGAGCTTCATCTTCTTGATCACTAGATTCGATACGTGCCA
CCTTTCGATCTGTACCACCATTCACAGCACGGGGATTCTTCCTCTTCAAC
GGGGAATCATCTCCAAGGATATCAATCTCCATATCTTCACCAACGGCGGG
CGATTCCTTATTTGATTGACGTTTCAGCTTTACAAGATTCAAAGGAATCT
TCACTAACAAACGTTTTGGTTGCTCTTTGACGGCAATTTCTTTGACGGCA
ATTTCCTTGACGACAATTTCTTTTGCGTTGTTTTGTGTTGTCATATCATT
TATTTGGTTGAACACATCGAAACAATTACCAGGACTTGGCGTATCTCTCT
TTTCTGTTTCCAAAACAGACTGTGGAATAGGAGAAGGTTGCTCTATAGGT
TCTTGCTTCACAACACTGTTTCTGCGACTTTGCTTGGATGGTTCTTTGAC
ACGTGTTACTATAACATCGTCTGTCGTGGAGACTGATGGTGGTTGGACTT
GAGAATCTGTGGAGAAAAAATCTATCATTTTCAATCTATTGACTCCAAAG
CAAAAAGGTAATCATGGACAAAGAATAATTTAATCTTTTACTGGTTTTAA
AGTCAAGTGAGAGGTAAAGGTAACGATTAAGATTTCACTTCATGTTAAAA
AGAATTTCTAGAAAGAGAAGAGTATTAGAGATAATACTGACCAAGAACCG
GTTGACTGGACCCAAGGAGATCCAAACTGGCTTCAATTGGCTCTGGTTTC
ACTTCCTGTAGAGGTTGATGTTGTTGAGCAGATGGTGGTTGTTGGGCAGA
AGATATTGGCTGAAAGGATGTTGCACCTGCCAAACTACTTGTCGGTGGTA
GTGAAGGTTGTGTGTTATTTGTTGGTGGATGAGAGACTACTGCAGGTTTA
TTTGGTAGCGGTTGTTGTTGCTGGTCACTTATCAGAGGTGGTATACCTGG
AGTTGTGGTAGGTGGTACAGCTGCAAATACACTGTTGTTTGGAATCGGTT
GAAAATTAGAAGTAGAGCTGTTATGTAATGTCTGCATTGGTGGTTTAGTT
GCAATATGAGGAGGAGGCAAAACAGTGGTAGTTGTTGGAGGAGGATGAAT
ACCAGGAACCGCTTGAGGAGGATGCGCATTACTCATAGTGTGGGTAGGTG
GCATACCATGAACTGATTGTGGATGAGGTATACCTGGAAGGGAATGTANT
GTTATGGtgctgctgttgttgttgttgttgcataTTATTGGTGCTTGTCA
TTGGAGCTGACGGAGTAAAGTTCAATTCCATATTGTCTGATGGATTAACT
GGAGGTTGCCCACGATTGAAATTCAGAGGAGGTACAGTGGCCTGAGGTTT
TAAAGAATTATTTGAGGGTTTATTGGATTCTGGTAACAatgtctgttgtt
gttgttgaggttgttttgatgaaaaatctaAAGACTGTTCGTGATTAAAA
TGTATTGGTTGCTGCAGTCTATTATGATGGTTCAAATTCACCATCGGAGG
AGGAATTTGAGACATGTGAGGGAACGCAGGGTTGGTTGTTGGTGGAAAGG
AGTTATTGGTAGTTGGTGGGAATCCCATGCCTGGGTGATGTGTGTATGGT
GGAGGAATTTGTTGGTGGAAATTAAGTGCATTCATATCATTCCGAGTATT
CAAGTTCATATTCAAATGTGGTTGCTGTTGTTTATATTGCTGATCCTGTA
ACATATTAACAGGTTGTTGTTGCTTCTGAGAAGGTTGTTGATTTGAATAG
TGTTGAAGCTGATTCATATTACTGTTCATTGAGTAGGGTGGAGGAGGTCC
ATTCGGTATCATTGTTGAAATATGATCGAACGGTGGTGCGTCAATGCTGG
TTGTCCTTGTTAGGATAGCGTTAACGGTTGATGGTACTGCTGAATTCACA
TCACGAGGATGACTGAAGGTTGTAGTGATCAGTGGTGGCTCTTGCAATGA
GATTGTCGTAGTTGTAGGAGGAGATAGCAGATTATCTGGTTTAGTTTGAG
GTACAGGTGCAATTGGAGGAAGAGGTCGGGCTTGCGACTGCAAAGGTATA
TTAGTATCTTCTAGTTTTGGCTCTGGCTTTTCTTCATGCAAATCGAGACT
GGCTGGAAGATTGGTGAGGAGAGCTGGGGCTGAAAAATTGGTGGCGAGAG
TTGGAGCTGTAGTTGGAGAGGTTTTGATTTCTTCCTTCAAACTTTCTACC
GGTTTACACGAGCCAGATTGTGATGCAATAGGTTTAGGTAATATAGTTTC
ATTGGAACTTGAAGTGGTGATAGTGGTGAGAGGAGGAGGTATATCTTGAG
TAAAAGAAAGCAAGCCAGATGTCGTGTTCGTAGTAGTTAAAGCTGATGCT
GCAAAGGGTGAAGAAGTTGTCACAAGAGCAGAAACTGTTGTGACGTCATT
CTGTGTGGTTGGGGTAGGTGTTAAACCAAAGTTGGAGATATTGGGTGAAG
AATCAATAGGGCTTATGATACCTTGTATGGTTGTATTTAACCTTTGTTCG
AAGAAATCGCTATCATCGTCAAAGATCGATTTTGGTGGCTCTAATGGAAG
TCCAGAAAAGATCTCTTTCATATCATTGGCTATCAAACTTGATCTACTCA
TTTTAATTGGTTCAGGTTTAGGGATTACAGGTTTTTCGTCCTTTTGAGCA
GGCGGTTTGGATAAAGATAACTTTTTCGGAGTACTATCTGTAGTATCCAT
TGCTTCAGACGATTCAGAAATACTACCAAAAACATCATCCTCAGATTGTT
CAATAACTTTAGCCTTTTCAGGCTCTTTCGTTAAGCTTTCTCTACCTTTA
CAGCTTGTAGtagattgtttttcttttttatctttatttcgAACAGAAGA
CCTTGACGATTGCCGCCTAGTTTTTCCAACACTTTTAGGTTTTTCAGTCT
CTTTATTAGTATTATCAGCTACGGGCATCTTTAACTGAGCTTTCGTTTTG
AATGGTTGGCCACCATTAGAACCAGAGTTCACTTTTACAGATGCTGAAGC
CGTGTTCATACCCTCTATCCTTGTATTTTTACTCTTTGATTTGTCCTTAG
TTTCGTTACTTTTTGAAGATAGTTTATTGCGTTGGTCAGTCTTTTTATCT
TGTGATAAAGTAGAGTTTTTATTATTCAAGTCATTTTGTTGACTTTCAGC
TTTTTTGCTGTCTTTACTGTACAAATTGTTCTTTTTGTGCAACACAAGAG
AATCATTAATGTCACTCTGTTGGAAAGAATCAAATGCACTTCGGTCTTCG
GACTCGCTCATTGAAGTATTAGTAGTCGTATCTTTTTCAAGATCAGACAA
CTCTTTACCAATCAAATCGTCAACCGTGAAATTATCATGTGAATTTGCAA
TTGGAAAATTATCAATGTCCTCAAACAACTTCATGTCACTGTTCATGTTG
TCTAAAGGACTAATAGGTTTTTCAGGGGATGATCCAAGTGAAAAGCCCAA
GGTAAATGGATGCGAATTAATGTCCATCAAGTCTAAACCATTACTAGCTC
CCTTCATCAGTCCTGTGTTTTCTTCTTTCACCGCTACCGATGTCAGATTC
ATTTCTTTGGATTTTTCGGGGAACTTCAAACCCATCATGTTTGTGGTATT
ATCATTAACGCCAATTGGAATTTCTGTTAGATAATTATTATTGTTGCTTG
GCAATTCCTTTTTTATCTTGTCTGGTGGGTCAGCTTCTTTGTTTGTATtt
ggct Run BLAST on NCBI transcript from alignment at scaffold_253:1086160..1091617+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055447 ID=TCONS_00055447|Name=TCONS_00055447|organism=Clytia hemisphaerica|type=transcript|length=5458bp|location=Sequence derived from alignment at scaffold_253:1086160..1091617+ (Clytia hemisphaerica)
TGAGCCCTGACTCAATCTCAGCGACGATCTAAAGGTGATAATTAAAAATC
TTATAGAAAGATGCAGATCAATTTATTAACACTTTTGCATCGTCATTGAG
TCAGGACCATTACAACCAAAAACTAATCAAAGGACTGTTTAAAAGGTTTT
GAAGAAAACTCTTCTAGCCTCGATCATGGAGAATGCTTACCTTAGGTACA
CGTTTCAGTCTGTTCAGATTGATGCGGACGACCAAACTCTTTGTTGGTTT
TGATTGAGCTTCATCTTCTTGATCACTAGATTCGATACGTGCCACCTTTC
GATCTGTACCACCATTCACAGCACGGGGATTCTTCCTCTTCAACGGGGAA
TCATCTCCAAGGATATCAATCTCCATATCTTCACCAACGGCGGGCGATTC
CTTATTTGATTGACGTTTCAGCTTTACAAGATTCAAAGGAATCTTCACTA
ACAAACGTTTTGGTTGCTCTTTGACGGCAATTTCTTTGACGGCAATTTCC
TTGACGACAATTTCTTTTGCGTTGTTTTGTGTTGTCATATCATTTATTTG
GTTGAACACATCGAAACAATTACCAGGACTTGGCGTATCTCTCTTTTCTG
TTTCCAAAACAGACTGTGGAATAGGAGAAGGTTGCTCTATAGGTTCTTGC
TTCACAACACTGTTTCTGCGACTTTGCTTGGATGGTTCTTTGACACGTGT
TACTATAACATCGTCTGTCGTGGAGACTGATGGTGGTTNCAAGCAAAACC
AATTTAATTGAATAAactcttttttgtcattttaaacccttaaaactaaa
gaaaacTGAGCCCTGACTCAATCTCAGCGACGATCTAAAGGTGATAATTA
AAAATCTTATAGAAAGATGCAGATCAATTTATTAACACTTTTGCATCGTC
ATTGAGTCAGGACCATTACAACCAAAAACTAATCAAAGGACTGTTTAAAA
GGTTTTGAAGAAAACTCTTCTAGCCTCGATCATGGAGAATGCTTACCTTA
GGTACACGTTTCAGTCTGTTCAGATTGATGCGGACGACCAAACTCTTTGT
TGGTTTTGATTGAGCTTCATCTTCTTGATCACTAGATTCGATACGTGCCA
CCTTTCGATCTGTACCACCATTCACAGCACGGGGATTCTTCCTCTTCAAC
GGGGAATCATCTCCAAGGATATCAATCTCCATATCTTCACCAACGGCGGG
CGATTCCTTATTTGATTGACGTTTCAGCTTTACAAGATTCAAAGGAATCT
TCACTAACAAACGTTTTGGTTGCTCTTTGACGGCAATTTCTTTGACGGCA
ATTTCCTTGACGACAATTTCTTTTGCGTTGTTTTGTGTTGTCATATCATT
TATTTGGTTGAACACATCGAAACAATTACCAGGACTTGGCGTATCTCTCT
TTTCTGTTTCCAAAACAGACTGTGGAATAGGAGAAGGTTGCTCTATAGGT
TCTTGCTTCACAACACTGTTTCTGCGACTTTGCTTGGATGGTTCTTTGAC
ACGTGTTACTATAACATCGTCTGTCGTGGAGACTGATGGTGGTTGGACTT
GAGAATCTGTGGAGAAAAAATCTATCATTTTCAATCTATTGACTCCAAAG
CAAAAAGGTAATCATGGACAAAGAATAATTTAATCTTTTACTGGTTTTAA
AGTCAAGTGAGAGGTAAAGGTAACGATTAAGATTTCACTTCATGTTAAAA
AGAATTTCTAGAAAGAGAAGAGTATTAGAGATAATACTGACCAAGAACCG
GTTGACTGGACCCAAGGAGATCCAAACTGGCTTCAATTGGCTCTGGTTTC
ACTTCCTGTAGAGGTTGATGTTGTTGAGCAGATGGTGGTTGTTGGGCAGA
AGATATTGGCTGAAAGGATGTTGCACCTGCCAAACTACTTGTCGGTGGTA
GTGAAGGTTGTGTGTTATTTGTTGGTGGATGAGAGACTACTGCAGGTTTA
TTTGGTAGCGGTTGTTGTTGCTGGTCACTTATCAGAGGTGGTATACCTGG
AGTTGTGGTAGGTGGTACAGCTGCAAATACACTGTTGTTTGGAATCGGTT
GAAAATTAGAAGTAGAGCTGTTATGTAATGTCTGCATTGGTGGTTTAGTT
GCAATATGAGGAGGAGGCAAAACAGTGGTAGTTGTTGGAGGAGGATGAAT
ACCAGGAACCGCTTGAGGAGGATGCGCATTACTCATAGTGTGGGTAGGTG
GCATACCATGAACTGATTGTGGATGAGGTATACCTGGAAGGGAATGTANT
GTTATGGtgctgctgttgttgttgttgttgcataTTATTGGTGCTTGTCA
TTGGAGCTGACGGAGTAAAGTTCAATTCCATATTGTCTGATGGATTAACT
GGAGGTTGCCCACGATTGAAATTCAGAGGAGGTACAGTGGCCTGAGGTTT
TAAAGAATTATTTGAGGGTTTATTGGATTCTGGTAACAatgtctgttgtt
gttgttgaggttgttttgatgaaaaatctaAAGACTGTTCGTGATTAAAA
TGTATTGGTTGCTGCAGTCTATTATGATGGTTCAAATTCACCATCGGAGG
AGGAATTTGAGACATGTGAGGGAACGCAGGGTTGGTTGTTGGTGGAAAGG
AGTTATTGGTAGTTGGTGGGAATCCCATGCCTGGGTGATGTGTGTATGGT
GGAGGAATTTGTTGGTGGAAATTAAGTGCATTCATATCATTCCGAGTATT
CAAGTTCATATTCAAATGTGGTTGCTGTTGTTTATATTGCTGATCCTGTA
ACATATTAACAGGTTGTTGTTGCTTCTGAGAAGGTTGTTGATTTGAATAG
TGTTGAAGCTGATTCATATTACTGTTCATTGAGTAGGGTGGAGGAGGTCC
ATTCGGTATCATTGTTGAAATATGATCGAACGGTGGTGCGTCAATGCTGG
TTGTCCTTGTTAGGATAGCGTTAACGGTTGATGGTACTGCTGAATTCACA
TCACGAGGATGACTGAAGGTTGTAGTGATCAGTGGTGGCTCTTGCAATGA
GATTGTCGTAGTTGTAGGAGGAGATAGCAGATTATCTGGTTTAGTTTGAG
GTACAGGTGCAATTGGAGGAAGAGGTTGGACTTGCGACTGCAAAggtatt
ttagtgttttttagtTTTGGCTCTGGCTTTTCTTCATGCAAATCGAGACT
GGCTGGAAGATTGGTGAGGAGAGCTGGGGCTGGAAAATTGGTGGCGAGAG
TTGGAGCTGTAGTTGGAGAGGTTTTGATTTCTTCCTTCAAACTTTCTACC
GGTTTACACGAGGCAGATTGTGATGCAATAGGTTTAGGTAATATAGTTTC
ATTGGAACTTGAAGTTGTGATAGTGGTGAGAGGAGGAGGTATATCTTGAG
TAAAAGAAAGCAAGCCAGATGTCGTGTTCGTAGTAGTTAAAGCTGATGAN
TATTCAAGTTCATATTCAAATGTGGTTGCTGTTGTTTAAATTGCTGATCC
TGTAACATATTAACAGGCGGTTGTTGCTTCTGAGAAGATTGTTGGTTTGA
AAAGTGTTGAAGCTGATTCATATTACTGTTCATTGAGTAGGGTGGAGGAG
GTCCATTCGGTATCATTGTTGAAATATGATCAAACGGTGGTGCGTCAATG
CTGGTTGTCCTCGTTAGGATAGCGTTAACGGTTGACGGTACTGCTGAAGT
CACATCACGAGGATGACTGAAGGTTGTAGTGATCAGTGGTGGCTCTTGCA
ACGAGATTGTCGTAGTTGTAGGAGGTGATAGCAGATTATCTGGTTTAGTT
TGAGGTACAGGTGCAATTGGAGGAAGAGGTCGGGCTTGCGACTGCAAAGG
TATATTAGTATCTTCTAGTTTTGGCTCTGGCTTTTCTTCATGCAAATCGA
GACTGGCTGGAAGATTGGTGAGGAGAGCTGGGGCTGAAAAATTGGTGGCG
AGAGTTGGAGCTGTAGTTGGAGAGGTTTTGATTTCTTCCTTCAAACTTTC
TACCGGTTTACACGAGCCAGATTGTGATGCAATAGGTTTAGGTAATATAG
TTTCATTGGAACTTGAAGTGGTGATAGTGGTGAGAGGAGGAGGTATATCT
TGAGTAAAAGAAAGCAAGCCAGATGTCGTGTTCGTAGTAGTTAAAGCTGA
TGCTGCAAAGGGTGAAGAAGTTGTCACAAGAGCAGAAACTGTTGTGACGT
CATTCTGTGTGGTTGGGGTAGGTGTTAAACCAAAGTTGGAGATATTGGGT
GAAGAATCAATAGGGCTTATGATACCTTGTATGGTTGTATTTAACCTTTG
TTCGAAGAAATCGCTATCATCGTCAAAGATCGATTTTGGTGGCTCTAATG
GAAGTCCAGAAAAGATCTCTTTCATATCATTGGCTATCAAACTTGATCTA
CTCATTTTAATTGGTTCAGGTTTAGGGATTACAGGTTTTTCGTCCTTTTG
AGCAGGCGGTTTGGATAAAGATAACTTTTTCGGAGTACTATCTGTAGTAT
CCATTGCTTCAGACGATTCAGAAATACTACCAAAAACATCATCCTCAGAT
TGTTCAATAACTTTAGCCTTTTCAGGCTCTTTCGTTAAGCTTTCTCTACC
TTTACAGCTTGTAGtagattgtttttcttttttatctttatttcgAACAG
AAGACCTTGACGATTGCCGCCTAGTTTTTCCAACACTTTTAGGTTTTTCA
GTCTCTTTATTAGTATTATCAGCTACGGGCATCTTTAACTGAGCTTTCGT
TTTGAATGGTTGGCCACCATTAGAACCAGAGTTCACTTTTACAGATGCTG
AAGCCGTGTTCATACCCTCTATCCTTGTATTTTTACTCTTTGATTTGTCC
TTAGTTTCGTTACTTTTTGAAGATAGTTTATTGCGTTGGTCAGTCTTTTT
ATCTTGTGATAAAGTAGAGTTTTTATTATTCAAGTCATTTTGTTGACTTT
CAGCTTTTTTGCTGTCTTTACTGTACAAATTGTTCTTTTTGTGCAACACA
AGAGAATCATTAATGTCACTCTGTTGGAAAGAATCAAATGCACTTCGGTC
TTCGGACTCGCTCATTGAAGTATTAGTAGTCGTATCTTTTTCAAGATCAG
ACAACTCTTTACCAATCAAATCGTCAACCGTGAAATTATCATGTGAATTT
GCAATTGGAAAATTATCAATGTCCTCAAACAACTTCATGTCACTGTTCAT
GTTGTCTAAAGGACTAATAGGTTTTTCAGGGGATGATCCAAGTGAAAAGC
CCAAGGTAAATGGATGCGAATTAATGTCCATCAAGTCTAAACCATTACTA
GCTCCCTTCATCAGTCCTGTGTTTTCTTCTTTCACCGCTACCGATGTCAG
ATTCATTTCTTTGGATTTTTCGGGGAACTTCAAACCCATCATGTTTGTGG
TATTATCATTAACGCCAATTGGAATTTCTGTTAGATAATTATTATTGTTG
CTTGGCAATTCCTTTTTTATCTTGTCTGGTGGGTCAGCTTCTTTGTTTGT
ATttggct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055447-exon-scaffold_253-1491911889:1086160..1089209 | TCONS_00055447-exon-scaffold_253-1491911889:1086160..1089209 | Clytia hemisphaerica | exon |
| TCONS_00055447-exon-scaffold_253-1510915933:1086160..1089209 | TCONS_00055447-exon-scaffold_253-1510915933:1086160..1089209 | Clytia hemisphaerica | exon |
| TCONS_00055447-exon-scaffold_253-1575043694:1086160..1089209 | TCONS_00055447-exon-scaffold_253-1575043694:1086160..1089209 | Clytia hemisphaerica | exon |
| TCONS_00055447-exon-scaffold_253-1491911889:1089914..1091617 | TCONS_00055447-exon-scaffold_253-1491911889:1089914..1091617 | Clytia hemisphaerica | exon |
| TCONS_00055447-exon-scaffold_253-1510915933:1089914..1091617 | TCONS_00055447-exon-scaffold_253-1510915933:1089914..1091617 | Clytia hemisphaerica | exon |
| TCONS_00055447-exon-scaffold_253-1575043694:1089914..1091617 | TCONS_00055447-exon-scaffold_253-1575043694:1089914..1091617 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:1086160..1091617 + |
Blast
The following BLAST results are available for this feature:
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