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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055456 ID=TCONS_00055456|Name=TCONS_00055456|organism=Clytia hemisphaerica|type=transcript|length=1093bp
ttcttcatctttctttttagaaaaaaatatttgtgtgaaaaatgaaaact
atGATTTGGAATGAAAGAGAATTCTGGGCCAGTTCTCGTCAGCAATTCTC
TACTGCTCAGATCAAGTTTGATCATTGGACTTGGATTAATCCATATTATG
TAGCCATCTTGCTACGACGTTGCTTCTCTAAATTGACGTTACAAcacaat
aagaatttttgacgtcaaatattattTGGATGGcaacaaaatcagaaaaa
ttaaaacacAAAAACGACCTACTCTTTCCAAGATTCTTGCCTGGACAACA
CGTTCATAATTCCAACAGCTTTTCTCCTGTGAAGCACccataaaacaaaa
actaaaatggctgaCGAATCAATTTCTGATTACGATCTCGACGATGGAAG
AGACGGAGATATCGGTGTTTATGAGGGTGAGCGCAACGAGTTAGGTGAGC
GACATGGCCTTGGTACATCACATTTCCCTAACGGTGACGTGTATGAAGGA
AGCTATGAACACGGAAGACGTAATGGTTACGGCATCTATCGATTCAAGAA
TGGAAAATACGAAGGTATTTACGTAAACGGTAAACGTGGCGGTCGTGGCT
TTATGCATTACCCAGACGGTAGCACATACGACGGCGAATGGGCGGACAAC
GACAAGAACGGGACTGGAACATATACGTATCGCAATGGAGATATTTACGA
AGGTGGATGGAAAGATGACCAAAAGAATGGTAAAGGAGTTTACACTTATA
AAGATAGTGGAACCAAATTATACGGATATTGGTCGGAAGGTGTCCGTGAG
GGACCTGCCGAATGGTACAACACAGGACATTCTTTCAAAGGATATTTTCG
TAATGATAACCCTCTCGGTCGCGGTAAATTCTCTTTCGATAGTGGTTGTG
AACAACATGGTTTCTACCGTGTCACAAACCTCGTTGAACAAGTTGATAAT
CGACACGTGGAAGTTGTCGGTCAAGAGACTCGATGGACCTGCACCTCCCT
TACAGCTGCACCGCCAAAAGTTACATTATAATTTCTTGGAGAATCGTTTC
CttcttttatgatattttttaatCTTCTTTTCTGAAATACAAT Run BLAST on NCBI transcript from alignment at scaffold_253:1233717..1236217+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055456 ID=TCONS_00055456|Name=TCONS_00055456|organism=Clytia hemisphaerica|type=transcript|length=2501bp|location=Sequence derived from alignment at scaffold_253:1233717..1236217+ (Clytia hemisphaerica)
ttcttcatctttctttttagaaaaaaatatttgtgtgaaaaatgaaaact
atGATTTGGAATGAAAGAGAATTCTGGGCCAGTTCTCGTCAGCAATTCTC
TACTGCTCAGATCAAGTTTGATCATTGGACTTGGATTAATCCATATTATG
TAGCCATCTTGCTACGACGTTGCTTCTCTAAATTGACGTTACAAcacaat
aagaatttttgacgtcaaatattattTGGATGGcaacaaaatcagaaaaa
ttaaaacacAAAAACGACCTACTCTTTCCAAGATTCTTGCCTGGACAACA
CGTTCATAATTCCAACAGCTTTTCTCCTGTGAAGCACccataaaacaaaa
actaaaatggctgaCGAATCAATTTCTGATTACGATCTCGACGATGGAAG
AGACGGAGATATCGGTAagtggtcaaaattcttgctttttctgtacaccc
ctgtctcgatGACCTAGTTGACAAAGTTCTTTTAGACAGCATGGATAAAA
TGAAGGAGCCGAACAGTTGTATGGACAGCTTGCAAAGGTTCTGTAACATG
GGGGTTGCTTTTTGCTCAATCAAAGCTCTTAATATATTATGGTTGTTATT
CTGAAATCAATGAAACTGAGAGACAGTGGTCCTAGATGCTGTCCAAATTT
ATGTTGTATCTTTATTAGAAGTTGATTACGTACCCCATCTTTTGTAATAG
TCATATTTACCTGTGCACATAATCGAGTGAAAGAGGATCGAATCTCTGTA
TGAATTTCTCTCTAGTactaaataattttcttttaccCATTAGGTGTTTA
TGAGGGTGAGCGCAACGAGTTAGGTGAGCGACATGGCCTTGGTACATCAC
ATTTCCCTAACGGTGACGTGTATGAAGGAAGCTATGAACACGGAAGACGT
AATGGTTACGGCATCTATCGATTCAAGAATGGAAAGTATGCAAAGCATTT
TATACGTATAGACCTTGCATTTTAATagtcttttttacttttaaatgcTT
TTAAAAGGAGAATCAGACATTTTATCTGGGGTTGTGACGTTGCTCACATG
AATAAGTTATCGCGAGAACAATCTTTCTCCCACGCTTTCTTAATCATTGT
TATCGATATGCCATGTTTCTGTTGTGTCGCGAGCACAGGGACAGTGGTGA
ATGGTAATAGCGCTAGGATCTCCCTACTCTAGAATATGTAACTATCCGGG
GATAGGGTCCATCAACCACGCATGGGTGGGATATCCTTCCGCTAGAGATA
AGTTTCGAGTATGcaggaaattgaaaaattaaaaaaaataacataattct
caacttttcttttttaaccTCTTTCAGATACGAAGGTATTTACGTAAACG
GTAAACGTGGCGGTCGTGGCTTTATGCATTACCCAGACGGTAGCACATAC
GACGGCGAATGGGCGGACAACGACAAGAACGGGACTGGAACATATACGTA
TCGCAATGGAGATATTTACGAAGGTGGATGGAAAGATGACCAAAAGAATG
GTAAAGGAGTTTACACTTATAAAGATAGTGGAACCAAATTATACGGTAAG
ATTTTAAATGATATGATGTGAAATGGGCTTACTTTGTGTCAAACCAAACA
CCTTCTATAGGCctttttcatgaattattttgagtgcCCTCATTTTCAAA
CCATTATCAAGGTGTGATTAGAACCTTAAGTCTTCATGTGTTACTATTAT
AAATAGAGTAAACTTCTCATAAGCTCCTCTTGGAATCAATAACCAGGCca
acattttaaaaacgagGTGAGCGTTGCTTGTGacttaatttatgaaaata
tttcttctttatCAAACATGCTCACTTCATTGTCTCTCACAACAGACTAA
TTAGTGCCCCTGTTGTTAGATGGAAATTTCACGCAGTGTCCTATTGCGAG
GTGTTTTCTCATCAGTCTTGGTGCGAAGTCATGCGAACTAAATAATTGTT
TGAATTGATCGAAATGTTAATTTCTCTATATGAAGGTTGAACATTTTTTA
GCCTAACATTAACAAAAGTGGTTACAAAACTCTCTTCCCATAGAAGGATT
ATGACAACAAAAGAGCTACTCTGAGAACCTCCTGTAACTGCCGTTTCTAA
AGTCTTGGTTACATTATTGGACCACTTCACTTGGATTTTGGCATGAATAA
TTATAAACATATGTTAAATATCTTTCTTTCAGGATATTGGTCGGAAGGTG
TCCGTGAGGGACCTGCCGAATGGTACAACACAGGACATTCTTTCAAAGGA
TATTTTCGTAATGATAACCCTCTCGGTCGCGGTAAATTCTCTTTCGATAG
TGGTTGTGAACAACATGGTTTCTACCGTGTCACAAACCTCGTTGAACAAG
TTGATAATCGACACGTGGAAGTTGTCGGTCAAGAGACTCGATGGACCTGC
ACCTCCCTTACAGCTGCACCGCCAAAAGTTACATTATAATTTCTTGGAGA
ATCGTTTCCttcttttatgatattttttaatCTTCTTTTCTGAAATACAA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055456-exon-scaffold_253-1491911889:1233717..1234130 | TCONS_00055456-exon-scaffold_253-1491911889:1233717..1234130 | Clytia hemisphaerica | exon |
| TCONS_00055456-exon-scaffold_253-1510915933:1233717..1234130 | TCONS_00055456-exon-scaffold_253-1510915933:1233717..1234130 | Clytia hemisphaerica | exon |
| TCONS_00055456-exon-scaffold_253-1575043694:1233717..1234130 | TCONS_00055456-exon-scaffold_253-1575043694:1233717..1234130 | Clytia hemisphaerica | exon |
| TCONS_00055456-exon-scaffold_253-1491911889:1234510..1234651 | TCONS_00055456-exon-scaffold_253-1491911889:1234510..1234651 | Clytia hemisphaerica | exon |
| TCONS_00055456-exon-scaffold_253-1510915933:1234510..1234651 | TCONS_00055456-exon-scaffold_253-1510915933:1234510..1234651 | Clytia hemisphaerica | exon |
| TCONS_00055456-exon-scaffold_253-1575043694:1234510..1234651 | TCONS_00055456-exon-scaffold_253-1575043694:1234510..1234651 | Clytia hemisphaerica | exon |
| TCONS_00055456-exon-scaffold_253-1491911889:1235044..1235261 | TCONS_00055456-exon-scaffold_253-1491911889:1235044..1235261 | Clytia hemisphaerica | exon |
| TCONS_00055456-exon-scaffold_253-1510915933:1235044..1235261 | TCONS_00055456-exon-scaffold_253-1510915933:1235044..1235261 | Clytia hemisphaerica | exon |
| TCONS_00055456-exon-scaffold_253-1575043694:1235044..1235261 | TCONS_00055456-exon-scaffold_253-1575043694:1235044..1235261 | Clytia hemisphaerica | exon |
| TCONS_00055456-exon-scaffold_253-1491911889:1235899..1236217 | TCONS_00055456-exon-scaffold_253-1491911889:1235899..1236217 | Clytia hemisphaerica | exon |
| TCONS_00055456-exon-scaffold_253-1510915933:1235899..1236217 | TCONS_00055456-exon-scaffold_253-1510915933:1235899..1236217 | Clytia hemisphaerica | exon |
| TCONS_00055456-exon-scaffold_253-1575043694:1235899..1236217 | TCONS_00055456-exon-scaffold_253-1575043694:1235899..1236217 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:1233717..1236217 + |
Blast
BLAST of TCONS_00055456 vs. Swiss-Prot (Human)
Match: RSPH1 (Radial spoke head 1 homolog OS=Homo sapiens GN=RSPH1 PE=1 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.038e-53 Identity = 97/196 (49.49%), Postives = 128/196 (65.31%), Query Frame = 3
Query: 420 YEGERNELGERHGLGTSHFPNGDVYEGSYEHGRRNGYGIYRFKNG-KYEGIYVNGKRGGRGFMHYPDGSTYDGEWADNDKNGTGTYTYRNGDIYEGGWKDDQKNGKGVYTYKDSGTKLYGYWSEGVREGPAEWYNTGHSFKGYFRNDNPLGRGKFSFDSGCEQHGFYRVTNLVEQVDNRHVEVVGQETRWTCTSLT 1004
YEG RNE GERHG G + PNGD YEGSYE G+R+G GIY+FKNG +Y G YV K+ G+G YPDGS Y+GEWA++ ++G G Y Y N D Y G W Q++G+G Y Y ++G+K G W G +EG AE + H ++G F N NP+G GK+ FD GCEQHG YR+T++ + E+V +W T +T
Sbjct: 20 YEGGRNEAGERHGRGRARLPNGDTYEGSYEFGKRHGQGIYKFKNGARYIGEYVRNKKHGQGTFIYPDGSRYEGEWANDLRHGHGVYYYINNDTYTGEWFAHQRHGQGTYLYAETGSKYVGTWVNGQQEGTAELIHLNHRYQGKFLNKNPVGPGKYVFDVGCEQHGEYRLTDMERGEEEEEEELVTVVPKWKATQIT 215
The following BLAST results are available for this feature:
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