TCONS_00055486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055486
Unique NameTCONS_00055486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length832

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055486 ID=TCONS_00055486|Name=TCONS_00055486|organism=Clytia hemisphaerica|type=transcript|length=832bp
TTGCGAAGGAAATTCATCTCTTGGCGGCCGTCACCAGAATCTATTTTCAC
TTTAATGTTCTGACGAGTTCTTATATAACCCCAGGGCTTGTGAAAAGTAT
AAAAGAGAGACGTTGGAAGCTTTAGACCATCAACAATCAGCTTCACCAAG
CACCAACAAAGAACAATTGCGTTCACCACAAATAACTCAACAAAGATGAT
GAAACTCGTTTGCATTGCTGCTTTATTAGCAGTTTCGATGGCTTTGGAAG
TCCCACAAGCAGCAGAAGGACCACATATTGCAAAAGGTGTTGATTGTCCA
TCATATTTGTGTAATGGAAAACCCGATGGAAATTTCGAGTACAGACCATA
TTCTGGATATGTCAAAAACCAATTCGTTCAATGTGTTGATGGAAAACCTT
CATGTCAAGTTTGCTGGCCAAAGAATCTTGAATTCTCTGAAAGATGCAAC
CAATGTCTTTACTCTGCTCATGATGAATGTGTTTCGACCGTAGCATTCAG
CCCTGCTGTCACCTCATTCTGTCCTGACAAATGCCCACACCGTGGACCAA
AATTCAGTGGAAACATTGCTGACTCAGACAACAACAAACATTACATTGCA
TGCTGGGAAGGTGTGACTGTTGGTTGTGTTGATTGTCCAAAAGGATTGTT
GTTCAACGAACAATGGAATGCATGTTTATACAACGGAGTACACATCACCA
AACCTGGATCCCCCTAAATTAAAATCCATTCATCCGGATGtcaaatcatt
tcaaattttctgaccttttttaattattgtaaatttttattttgatattt
tcataaaaaagacactgaatttccattaaatt
Run BLAST on NCBI

protein sequence of TCONS_00055486-protein

>TCONS_00055486-protein ID=TCONS_00055486-protein|Name=TCONS_00055486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MMKLVCIAALLAVSMALEVPQAAEGPHIAKGVDCPSYLCNGKPDGNFEYR
PYSGYVKNQFVQCVDGKPSCQVCWPKNLEFSERCNQCLYSAHDECVSTVA
FSPAVTSFCPDKCPHRGPKFSGNIADSDNNKHYIACWEGVTVGCVDCPKG
LLFNEQWNACLYNGVHITKPGSP
Run BLAST on NCBI

transcript from alignment at scaffold_253:266803..267954-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055486 ID=TCONS_00055486|Name=TCONS_00055486|organism=Clytia hemisphaerica|type=transcript|length=1152bp|location=Sequence derived from alignment at scaffold_253:266803..267954- (Clytia hemisphaerica)
TTGCGAAGGAAATTCATCTCTTGGCGGCCGTCACCAGAATCTATTTTCAC
TTTAATGTTCTGACGAGTTCTTATATAACCCCAGGGCTTGTGAAAAGTAT
AAAAGAGAGACGTTGGAAGCTTTAGACCATCAACAATCAGCTTCACCAAG
CACCAACAAAGAACAATTGCGTTCACCACAAATAACTCAACAAAGATGAT
GAAACTCGTTTGCATTGCTGCTTTATTAGCAGGTATAACTTATATTCTTT
AAGGCAACTGTTATTCTGCATTAGCTCAGATAGTACATGTCTCGTGCATC
TTTTCTATGAAAACTAGTAGGTTTCTGGTTCCGTACTACCCTTCTCTAGT
TTATTATCGACGATGTGTTTTCCTTTCTGGATTTAACGTAATTTCATTGA
TTTACTCACACAGTTTCGATGGCTTTGGAAGTCCCACAAGCAGCAGAAGG
ACCACATATTGCAAAAGGTGTTGATTGTCCATCATATTTGTGTAATGGAA
AACCCGATGGAAATTTCGAGTACAGACCATATTCTGGATATGTCAAAAAC
CAATTCGTTCAATGTGTTGATGGAAAACCTTCATGTCAAGTTTGCTGGCC
AAAGAATCTTGAATTCTCTGAAAGATGCAACCAATGTCTTTACTCTGCTC
ATGGTAAGGAAAATACTTTTATTTTGAAATAACAATCTAAAAGATTTGAA
AATATGGAGATGTCTATGATTTCCAACCCATGCGAACTTACAAGTATTCT
GAACCTTGTCCTATTTAACTTATATTCCTTCTTGTCTTTCAGATGAATGT
GTTTCGACCGTAGCATTCAGCCCTGCTGTCACCTCATTCTGTCCTGACAA
ATGCCCACACCGTGGACCAAAATTCAGTGGAAACATTGCTGACTCAGACA
ACAACAAACATTACATTGCATGCTGGGAAGGTGTGACTGTTGGTTGTGTT
GATTGTCCAAAAGGATTGTTGTTCAACGAACAATGGAATGCATGTTTATA
CAACGGAGTACACATCACCAAACCTGGATCCCCCTAAATTAAAATCCATT
CATCCGGATGTCAAATCATTTCAAATTTTCTGACCTTTTTTAATTATTGT
AAATTTTTATTTTGATATTTTCATAAAAAAGACACTGAATTTCCATTAAA
TT

Coding sequence (CDS) from alignment at scaffold_253:266803..267954-

>TCONS_00055486 ID=TCONS_00055486|Name=TCONS_00055486|organism=Clytia hemisphaerica|type=CDS|length=1566bp|location=Sequence derived from alignment at scaffold_253:266803..267954- (Clytia hemisphaerica)
ATGAATGTGTTTCGACCGTAGCATTCAGCCCTGCTGTCACCTCATTCTGT
CCTGACAAATGCCCACACCGTGGACCAAAATTCAGTGGAAACATTGCTGA
CTCAGACAACAACAAACATTACATTGCATGCTGGGAAGGTGTGACTGTTG
GTTGTGTTGATTGTCCAAAAGGATTGTTGTTCAACGAACAATGGAATGCA
TGTTTATACAACGGAGTACACATCACCAAACCTGGATCCCCCTAATTTCG
ATGGCTTTGGAAGTCCCACAAGCAGCAGAAGGACCACATATTGCAAAAGG
TGTTGATTGTCCATCATATTTGTGTAATGGAAAACCCGATGGAAATTTCG
AGTACAGACCATATTCTGGATATGTCAAAAACCAATTCGTTCAATGTGTT
GATGGAAAACCTTCATGTCAAGTTTGCTGGCCAAAGAATCTTGAATTCTC
TGAAAGATGCAACCAATGTCTTTACTCTGCTCATGATGATGAAACTCGTT
TGCATTGCTGCTTTATTAGCAGATGAATGTGTTTCGACCGTAGCATTCAG
CCCTGCTGTCACCTCATTCTGTCCTGACAAATGCCCACACCGTGGACCAA
AATTCAGTGGAAACATTGCTGACTCAGACAACAACAAACATTACATTGCA
TGCTGGGAAGGTGTGACTGTTGGTTGTGTTGATTGTCCAAAAGGATTGTT
GTTCAACGAACAATGGAATGCATGTTTATACAACGGAGTACACATCACCA
AACCTGGATCCCCCTAATTTCGATGGCTTTGGAAGTCCCACAAGCAGCAG
AAGGACCACATATTGCAAAAGGTGTTGATTGTCCATCATATTTGTGTAAT
GGAAAACCCGATGGAAATTTCGAGTACAGACCATATTCTGGATATGTCAA
AAACCAATTCGTTCAATGTGTTGATGGAAAACCTTCATGTCAAGTTTGCT
GGCCAAAGAATCTTGAATTCTCTGAAAGATGCAACCAATGTCTTTACTCT
GCTCATGATGATGAAACTCGTTTGCATTGCTGCTTTATTAGCAGATGAAT
GTGTTTCGACCGTAGCATTCAGCCCTGCTGTCACCTCATTCTGTCCTGAC
AAATGCCCACACCGTGGACCAAAATTCAGTGGAAACATTGCTGACTCAGA
CAACAACAAACATTACATTGCATGCTGGGAAGGTGTGACTGTTGGTTGTG
TTGATTGTCCAAAAGGATTGTTGTTCAACGAACAATGGAATGCATGTTTA
TACAACGGAGTACACATCACCAAACCTGGATCCCCCTAATTTCGATGGCT
TTGGAAGTCCCACAAGCAGCAGAAGGACCACATATTGCAAAAGGTGTTGA
TTGTCCATCATATTTGTGTAATGGAAAACCCGATGGAAATTTCGAGTACA
GACCATATTCTGGATATGTCAAAAACCAATTCGTTCAATGTGTTGATGGA
AAACCTTCATGTCAAGTTTGCTGGCCAAAGAATCTTGAATTCTCTGAAAG
ATGCAACCAATGTCTTTACTCTGCTCATGATGATGAAACTCGTTTGCATT
GCTGCTTTATTAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034909XLOC_034909Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055486-proteinTCONS_00055486-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055486-exon-scaffold_253-1575043694:267723..267954TCONS_00055486-exon-scaffold_253-1575043694:267723..267954Clytia hemisphaericaexon
TCONS_00055486-exon-scaffold_253-1575043694:267302..267541TCONS_00055486-exon-scaffold_253-1575043694:267302..267541Clytia hemisphaericaexon
TCONS_00055486-exon-scaffold_253-1575043694:266803..267162TCONS_00055486-exon-scaffold_253-1575043694:266803..267162Clytia hemisphaericaexon
TCONS_00055486-exon-scaffold_253-1510915933:267723..267954TCONS_00055486-exon-scaffold_253-1510915933:267723..267954Clytia hemisphaericaexon
TCONS_00055486-exon-scaffold_253-1510915933:267302..267541TCONS_00055486-exon-scaffold_253-1510915933:267302..267541Clytia hemisphaericaexon
TCONS_00055486-exon-scaffold_253-1510915933:266803..267162TCONS_00055486-exon-scaffold_253-1510915933:266803..267162Clytia hemisphaericaexon
TCONS_00055486-exon-scaffold_253-1491911889:267723..267954TCONS_00055486-exon-scaffold_253-1491911889:267723..267954Clytia hemisphaericaexon
TCONS_00055486-exon-scaffold_253-1491911889:267302..267541TCONS_00055486-exon-scaffold_253-1491911889:267302..267541Clytia hemisphaericaexon
TCONS_00055486-exon-scaffold_253-1491911889:266803..267162TCONS_00055486-exon-scaffold_253-1491911889:266803..267162Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:266803..267954 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.384957	0.170965	0.365179	0.357271	0.253034	0.279706	0.0732139	0	0.0905952	0.112217	0.464486	0.189631	3.69788	4.06928	2154.39	605.855	0.654211	1.27672	1.11603	0.640405	0.103945	0	0.326469	0.178085	0.244564	0.201199	0.235099	0.0833345	0.189619	0.121574
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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