TCONS_00055491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055491
Unique NameTCONS_00055491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055491 ID=TCONS_00055491|Name=TCONS_00055491|organism=Clytia hemisphaerica|type=transcript|length=1347bp
ctcaaaataagaaaatataagtGAAAAGTTCCACCATCTCAAAACACATG
ATATTCCTGTACAATGAAAGTGAAACTGACTTCAAATTCAAGACTATAAT
GGTAGAGCGGTATCATACTTTGGTACACAATGGAAATGCCATTTACATAC
CTCAATGGATCAGGATGACTGAATGAAGTCCTAGATACATTCAAGGTTGT
CCTCTGAAGTTCTTGATGGAGAAATGCGGCTATTGACAGATCTAGCTATT
CATTGTTGAAGACTTTGGTTTAATGAAGACATGAAAATGATTTTCCAGTG
GAATTGATTTGAGGAAGTTGGTTCAGGAGAAGAGATGAGTTTTCACAATG
CCATCTCAGgaactCCTGGCATCATTTTAATAGTTGTGATTTCGTTCGTT
TTGATCCTGCTCATTTGTGCTGCTCTTTATctcctcaaaaacaaaaaacc
aaaGAACGTCCGACAGTCGATTTTTGATCACGAAAAACAAATCAAGTACG
GTATACTAGACTATCCGCAGTCTGGAACTCCAGAATTTCATCCAAACCCG
ATCCAGCCTCCTTAtcaaacgaaagtgaaagtgaaattaATACCTAATAA
TGCGAAAACAAAGACGTCTATAAAATACACAGAACTCGGCGAAGGTGTTG
AAGAAGCTCAGGAGGACCATAAAATTTTGGATGACCTCTCCAGTGGAGAG
CACTCACCCAATCAAAAAGATTTCCGCAGGTCTGTACATCTTTATAAAGA
TAAAATCACAAACTTTATTTCCAAATATCGTGATGATCATGATTTATCGT
CTTTACCACAAAATGATACGGAACGCAGGATCTGGCAACCGGAACCAGTT
GCGGTCAATCAAACACACCGTTTACAAAGACCAGATAGTGTTCTTTCCAA
TGAACAAGAAATGAGTTTAGGACGATTAACTTTTACCATGTATTATCTAC
CTGGCGATGAATATTTAACTCTACTTTTGATATCTGGTCGACAATTGAAC
TCATGTGATTCCTTATATAACATTCGTTTGCCAGCTGTCAGTATCGTCAT
CGAAAATAATCCCAACACCGAAGTCACTTCAAACCCGGATGAAGCACCTA
ATCCGGAATATGACCAAGAATTCACTTTCACTATCCGCTCAAAAGAACTC
TTCGATGTGGTATTACGATTTACTGTTTGGGATATTATATCGAATAACGA
AACCAGAGTGCTTGGCTTTTTTCGTGTACCTTTAGCACAATACCAAAAGA
CTCTATTAGCTGGTTCTGATACAGGACCGATTTGTCGTGAAatacaaccc
tgtctcaatccTCCTTCCACGGTACTTGGTCAATTACTGATTTCTTN
Run BLAST on NCBI

transcript from alignment at scaffold_253:362824..366693-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055491 ID=TCONS_00055491|Name=TCONS_00055491|organism=Clytia hemisphaerica|type=transcript|length=3870bp|location=Sequence derived from alignment at scaffold_253:362824..366693- (Clytia hemisphaerica)
CTCAAAATAAGAAAATATAAGTGAAAAGTTCCACCATCTCAAAACACATG
ATATTCCTGTACAATGAAAGTGAAACTGACTTCAAATTCAAGACTATAAT
GGTAGAGCGGTATCATACTTTGGTACACAATGGAAATGCCATTTACATAC
CTCAATGGATCAGGATGACTGAATGAAGTCCTAGATACATTCAAGGTACC
TAAAGCGTCGTTTGTTTGTTTGTTTTTATTCGCCCTGCATACCTTTTGGT
ATAAAATTCTGAAATGCCGATTCAAATATTTTTCATCCATTTTGTTGATC
CTGATTCTAATGAATATGAAATAAATAAATTAACTCGATATTTTCTTTTA
GCAGAAACTTCTTATTGGACTCATTTAGATTTCCTTGTCAAGTCTTTGTG
TGATAAACGACTTATTTAAATCATACCCCATTATGAAATATTTTTACTTG
TAGGTTGTCCTCTGAAGTTCTTGATGGAGAAATGCGGCTATTGACAGATC
TAGCTATTCATTGTTGAAGACTTTGGTTTAGTAAGTATTGTGTGTTGAAT
TCTGCTACTCAACTTTTTGGGGTAGTTAAACCATGTACAACTTGTAGTGT
AGACGTCTTCTTTTTCGCTTTCAGAAGCAACATTAGAACGTTTTTCCCCC
GTTTTTTTTTACCTGGTTGTATAAAACGATGTATTCATGTTGTGACATTT
GTGACTACTTATAAATATGTTCATCAAAATTGTTGTCTGTGTTTTTTACA
TTATAAAGTGTTTCCTCATATATACTATATTTAAACCAATCTTTATTGAA
AAGAACAGTATTGCTGTCAACCCCTTTTGAAATGCTTAAAAAATAGTATT
CTCTTTTGTCCTCTTTTGATTGCACTGTTTGAATTAAAAGCATGTTTCTT
ACAAGAGATTCTTTTTGAGTTGTCTGAAGAGTACCAAATGGTCTTACTAA
GCTGTATTCAATGTTCTTTTTGACTGAAAATTTTACTGCATAAATTATAG
ATATTTCTACTTGAACCAGAATTTTACAAATTTCCCTGTTAAAAGAAACT
TAAAGATGACGTTTTTATAATTTGCTGAGTGAACCCAGTGACGTAGAGGT
AGTGTTTTCTTTGATCAGTGCTTTTTTCGTATGTTCTTGACAACTATTTT
TGTATTCTTTTGACTTGTTTTAATGAGAAATACCGTGGTTGTGCCAACGC
TTCAAACATCATCCAACAATCGCCCCCTTTATGTGAAATTCAGGAAACGG
AACACGGGCTACATGAAAAAAGATGATAAAACCTTTTCATTGAACAAGTG
AACAATCTAATCTGCTCTATTCTGAAATTGTTCCTTACCAGTACGAGAGA
GATTGTTTAAATAAATGCCATTTTTTATTAATTCTAATAACAGCGTAATT
ACATAGCTCATCTTTTTTCTCCACAAACGCGGGAATTGACAATTAGATTT
TTTGTCGAGAAAAAAGAAAGCTTAATAACTCAGAGTGTTGTCAGAAAGTT
ATGCTATATGATAAAAGTGATTTGATCAAAAAATCTCAATTTTGATTTTG
TTTTATGCGTCGTTTTAATCTTTCTATTGATTTTTTTTGTAGATTGTTTG
TGAATTGTGATTTTTTTGCCCCTTCTTTGCGTTGGTTTTGAGTTGTATTA
AGGTTTCATTTCGAGCAAATATTTGGATCAATGAGTGTACTATATAGCAA
CACTCTGCTATCTTTTAAACACAACTTACTGCTTACAGAATCTTCATAGT
TTTTTTACTACTCTTCAGATATGACTTTTTAAATTGGCTTAATGTTGGAA
AGAATTGAACAAAATGTTTTTACCTTATTCGTGCCTTTCGATAGAGATCT
ACGTAATGGAGGCAGTCTTTGCTTAAGTGTAAATGTAAATTGTAGCTATT
TGACATTTGGCTTTTAGAAAGATATTTGCATTTATTAGAAATTTCCTCAC
TAAAAGCTCACGAGAGAAATGTTATTTCCAGCGGCAGATTATAAGATTTT
ATATTCGTTTTGAATAAACTCTGTATCAAAGTTTGGTGTGAATGAAACCT
TTGCATCTGCTTCAAACTTAGCTCGCCATGCTTTCTTTCAATTTAAGAGA
CCCCAGAGCGCTTTGCCTTATATACTTTTTACATTTATTCCTGATATATT
AAAATGTGCTTGCTTTTTTAGATCTTAAACTTTTGATCAGTTTGAACTGT
AAACTTTAATACTTTTTCATTAAAAACTGCTGGATAAACTGTTTCTTTTT
TGTAATTTTTCTCAAGATGAAGACATGAAAATGATTTTCCAGTGGAATTG
ATTTGAGGAAGTTGGTTCAGGAGAAGAGATGAGTTTTCACAATGCCATCT
CAGGTGAAAAATATTCCTACTTAATGCACTACTTTCGATTGGACATTACT
AAATGACTGATAATACCTTATTCAGGATATGAGATACACGAAGAACACTT
TTTTTAATTTCCTTCAGTGGTATGTCAATATCTTCTAAATGCATTCCATA
TAAACAAGTGGTTTAGATTTTGAACTTTGCTTCTTTTTTCATTTTCAGGA
ACTCCTGGCATCATTTTAATAGTTGTGATTTCGTTCGTTTTGATCCTGCT
CATTTGTGCTGCTCTTTATCTCCTCAAAAACAAAAAACCAAAGAACGTCC
GACAGTCGATTTTTGATCACGAAAAACAAATCAAGTACGGTATACTAGAC
TATCCGCAGTCTGGAACTCCAGAATTTCATCCAAACCCGATCCAGCCTCC
TTATCAAACGAAAGTGAAAGTGAAATTAATACCTAATAATGCGAAAACAA
AGACGTCTATAAAATACACAGAACTCGGCGAAGGTGTTGAAGAAGCTCAG
GAGGACCATAAAATTTTGGATGACCTCTCCAGTGGAGAGCACTCACCCAA
TCAAAAAGATTTCCGCAGGTCTGTACATCTTTATAAAGATAAAATCACAA
ACTTTATTTCCAAATATCGTGATGATCATGATTTATCGTCTTTACCACAA
AATGATACGGAACGCAGGATCTGGCAACCGGAACCAGTTGCGGTCAATCA
AACACACCGTTTACAAAGACCAGATAGTGTTCTTTCCAATGAACAAGAAA
TGAGTTTAGGACGATTAACTTTTACCATGTATTATCTACCTGGCGATGAA
TATTTAACTCTACTTTTGATATCTGGTCGACAATTGAACTCATGTGATTC
CTTATATAACATTCGTTTGCCAGCTGTCAGTATCGTCATCGAAAATAATC
CCAACACCGAAGTCACTTCAAACCCGGATGAAGCACCTAATCCGGAATAT
GACCAAGAATTCACTTTCACTATCCGCTCAAAAGAACTCTTCGATGTGGT
ATTACGATTTACTGTTTGGGATATTATATCGAATAACGAAACCAGAGTGC
TTGGCTTTTTTCGTGTACCTTTAGCACAATACCAAAAGACTCTATTAGCT
GGTTCTGATACAGGACCGATTTGTCGTGAAATACAACCCTGTCTCAATCC
TGTAAGTCTAACACGAATTTCTCACTCGAGGTTGAAATAATGAGTTTTCA
AGAGATTAATAGCTCCATATTTCTCGCTATAAAATCATCCCGTTGATGGA
TGGTAGAAGATGAAGGAAAAGATTAGGAGATTCAAACAAACCTCAAAGGT
CGAACCAATCATCGGATTAACACCTTTCTTTTCCTAAACTAGTGTTGATT
TTTTTCTTCCCTCTCGAATGTGTTACGAATCTAACCTGTTCTGTAAAATC
TTAGAAAAGTACTTTTGCAAGCTCTCCCAGGATATAAACATTATATTTTT
TTAATAACTGGTCCTTCTTTCTTTGGTTATTTCAGCCTTCCACGGTACTT
GGTCAATTACTGATTTCTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034912XLOC_034912Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055491-exon-scaffold_253-1575043694:366499..366693TCONS_00055491-exon-scaffold_253-1575043694:366499..366693Clytia hemisphaericaexon
TCONS_00055491-exon-scaffold_253-1575043694:366164..366240TCONS_00055491-exon-scaffold_253-1575043694:366164..366240Clytia hemisphaericaexon
TCONS_00055491-exon-scaffold_253-1575043694:364341..364427TCONS_00055491-exon-scaffold_253-1575043694:364341..364427Clytia hemisphaericaexon
TCONS_00055491-exon-scaffold_253-1575043694:363193..364145TCONS_00055491-exon-scaffold_253-1575043694:363193..364145Clytia hemisphaericaexon
TCONS_00055491-exon-scaffold_253-1575043694:362824..362858TCONS_00055491-exon-scaffold_253-1575043694:362824..362858Clytia hemisphaericaexon
TCONS_00055491-exon-scaffold_253-1510915933:366499..366693TCONS_00055491-exon-scaffold_253-1510915933:366499..366693Clytia hemisphaericaexon
TCONS_00055491-exon-scaffold_253-1510915933:366164..366240TCONS_00055491-exon-scaffold_253-1510915933:366164..366240Clytia hemisphaericaexon
TCONS_00055491-exon-scaffold_253-1510915933:364341..364427TCONS_00055491-exon-scaffold_253-1510915933:364341..364427Clytia hemisphaericaexon
TCONS_00055491-exon-scaffold_253-1510915933:363193..364145TCONS_00055491-exon-scaffold_253-1510915933:363193..364145Clytia hemisphaericaexon
TCONS_00055491-exon-scaffold_253-1510915933:362824..362858TCONS_00055491-exon-scaffold_253-1510915933:362824..362858Clytia hemisphaericaexon
TCONS_00055491-exon-scaffold_253-1491911889:366499..366693TCONS_00055491-exon-scaffold_253-1491911889:366499..366693Clytia hemisphaericaexon
TCONS_00055491-exon-scaffold_253-1491911889:366164..366240TCONS_00055491-exon-scaffold_253-1491911889:366164..366240Clytia hemisphaericaexon
TCONS_00055491-exon-scaffold_253-1491911889:364341..364427TCONS_00055491-exon-scaffold_253-1491911889:364341..364427Clytia hemisphaericaexon
TCONS_00055491-exon-scaffold_253-1491911889:363193..364145TCONS_00055491-exon-scaffold_253-1491911889:363193..364145Clytia hemisphaericaexon
TCONS_00055491-exon-scaffold_253-1491911889:362824..362858TCONS_00055491-exon-scaffold_253-1491911889:362824..362858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:362824..366693 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.361422	0.27573	0.184153	0.544514	1.59066	1.57378	7.4551	6.32311	2.9909	3.99241	2.43084	2.7443	2.44904	2.27721	0.90305	1.36461	0.820984	2.69201	2.0762	2.91777	1.36159	0.252932	0.233719	1.67446	3.90685	4.73753	0.732627	1.74208	0.352146	0.7222
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top