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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055494 ID=TCONS_00055494|Name=TCONS_00055494|organism=Clytia hemisphaerica|type=transcript|length=884bp
AGCATCACCAATTACGTTGACAAAATTCACCAGtttgtGCAAGCAGTTGG
ATTAAACAAAAAGAAGTTTCACATCGTTGGTGAATCCATGGGCGGGCATA
TTGCGGGCGTTTATTCTGCCACACACCCTTCATCAATCGAGAAGACCACC
CTGATGTGTCCACATGGTATCAAGTTTGatcaaatggaaaaaatgaaagc
TGAATACGAACGCTCTGGGCATTGTATCTTATTACCGGATAGTCTGCAAA
CTGTCCGTGAAATGTTCGAATGTGTCCTTCACAAGAAATTTCCCTTCCCT
GATTTCGTATTGAATGGTATTTTACAAATGAGATTGCAAAATGACGACTT
CAACAAAAAACTGTTGTTACGTTTGGTGTCGTCTGAAGACGAAGATCTCT
TGGAACGTTCATTACACAACATACGATCACCCTGCACACTCCTTTGGGGA
AAACAGGATAAGATCTTGGACGTATCTTGCGCAGATAAGATCAAATCCAA
CCTCCCCAACCTCAAAAAGACGGTGATTTTTGACGATGCGGGACATGTCT
TGTCAATTGACTGTCCGCGAAAAGTGGCTAACAATTTAATGGAATGTTAA
AAACCTAACGACCCTCTGATGAGGTGATGAAAGTCAATACATTTTTAACA
GACGGATGAGCGAGAGCTCTGACTGACACCTACTCACATACACGAGAGTG
GTAGCAACTATTGTAGATTTTAATCTTATGCAGATGTTTAGAAATTTTAG
TAAATGTAAATATGTAAATATTCTTTGAGAGAGATGATAGATATTATAAT
GAAATAATGAAACACACGCTTAAACAAGATCTAATACATTTCTTGACGAT
CTTCAAAAGATATAAAAGATATGTCAAAGGCGAA Run BLAST on NCBI transcript from alignment at scaffold_253:388748..390141- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055494 ID=TCONS_00055494|Name=TCONS_00055494|organism=Clytia hemisphaerica|type=transcript|length=1394bp|location=Sequence derived from alignment at scaffold_253:388748..390141- (Clytia hemisphaerica)
AGCATCACCAATTACGTTGACAAAATTCACCAGGTAAGAAAAACATTATT
AAATTATTTTTTAACAGATGAAAAGTTTTAAAACCATTTAATGAGCTGGA
AAATACCTAATGTTTTGTTTTATGTACTGTCGAACTGTGTAAATGAGCTG
TTCATCTTTTTTCTTCAGTTTGTGCAAGCAGTTGGATTAAACAAAAAGAA
GTTTCACATCGTTGGTGAATCCATGGGCGGGCATATTGCGGGCGTTTATT
CTGCCACACACCCTTCATCAATCGAGAAGACCACCCTGATGTGTCCACAT
GGTATCAAGTTTGATCAAATGGAAAAAATGAAAGCTGAATACGAACGCTC
TGGGCATTGTATCTTATTACCGGATAGTCTGCAAACTGTCCGTGAAATGT
TCGAATGTGTCCTTCACAAGAAATTTCCCTTCCCTGATTTCGTATTGAAT
GGTATTTTACAAATGAGATTGCAAAATGACGACTTCAACAAAAAACGTAA
GTCAATTTCATTGAAAGTTCACTTTTGAAATGAGCTGATTTCTCTGACCT
CAAAGTTTCGCATACCTTCTAAATTTCAAGTAAAATCAATAAGAACACAC
AGATAAGTATATCAAAATGGAGAAAAATATAATGTATTTTCCTCTTGACA
TTTCAGTGTTGTTACGTTTGGTGTCGTCTGAAGACGAAGATCTCTTGGAA
CGTTCATTACACAACATACGATCACCCTGCACACTCCTTTGGGGAAAACA
GGATAAGGTAAGGAAAATACTCTTTGATATCTTTCCAACTTGTTCTCGAA
GATTGTTGGTTCGTCACTATAGAGGATGCAAACTTTTATTTGAGACATAG
AAATCTTCAAACAACAAATACCTTTTAGTACGTCTATTAGTGAGATAAGA
TCGGTATCTGTTGAGATTGTGCTAACTACATTCTTCTTCTAATGTAACGT
TTCGTTTGTTTATTTTTTGTAGATCTTGGACGTATCTTGCGCAGATAAGA
TCAAATCCAACCTCCCCAACCTCAAAAAGACGGTGATTTTTGACGATGCG
GGACATGTCTTGTCAATTGACTGTCCGCGAAAAGTGGCTAACAATTTAAT
GGAATGTTAAAAACCTAACGACCCTCTGATGAGGTGATGAAAGTCAATAC
ATTTTTAACAGACGGATGAGCGAGAGCTCTGACTGACACCTACTCACATA
CACGAGAGTGGTAGCAACTATTGTAGATTTTAATCTTATGCAGATGTTTA
GAAATTTTAGTAAATGTAAATATGTAAATATTCTTTGAGAGAGATGATAG
ATATTATAATGAAATAATGAAACACACGCTTAAACAAGATCTAATACATT
TCTTGACGATCTTCAAAAGATATAAAAGATATGTCAAAGGCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055494-exon-scaffold_253-1575043694:390109..390141 | TCONS_00055494-exon-scaffold_253-1575043694:390109..390141 | Clytia hemisphaerica | exon |
| TCONS_00055494-exon-scaffold_253-1575043694:389646..389973 | TCONS_00055494-exon-scaffold_253-1575043694:389646..389973 | Clytia hemisphaerica | exon |
| TCONS_00055494-exon-scaffold_253-1575043694:389385..389485 | TCONS_00055494-exon-scaffold_253-1575043694:389385..389485 | Clytia hemisphaerica | exon |
| TCONS_00055494-exon-scaffold_253-1575043694:388748..389169 | TCONS_00055494-exon-scaffold_253-1575043694:388748..389169 | Clytia hemisphaerica | exon |
| TCONS_00055494-exon-scaffold_253-1510915933:390109..390141 | TCONS_00055494-exon-scaffold_253-1510915933:390109..390141 | Clytia hemisphaerica | exon |
| TCONS_00055494-exon-scaffold_253-1510915933:389646..389973 | TCONS_00055494-exon-scaffold_253-1510915933:389646..389973 | Clytia hemisphaerica | exon |
| TCONS_00055494-exon-scaffold_253-1510915933:389385..389485 | TCONS_00055494-exon-scaffold_253-1510915933:389385..389485 | Clytia hemisphaerica | exon |
| TCONS_00055494-exon-scaffold_253-1510915933:388748..389169 | TCONS_00055494-exon-scaffold_253-1510915933:388748..389169 | Clytia hemisphaerica | exon |
| TCONS_00055494-exon-scaffold_253-1491911889:390109..390141 | TCONS_00055494-exon-scaffold_253-1491911889:390109..390141 | Clytia hemisphaerica | exon |
| TCONS_00055494-exon-scaffold_253-1491911889:389646..389973 | TCONS_00055494-exon-scaffold_253-1491911889:389646..389973 | Clytia hemisphaerica | exon |
| TCONS_00055494-exon-scaffold_253-1491911889:389385..389485 | TCONS_00055494-exon-scaffold_253-1491911889:389385..389485 | Clytia hemisphaerica | exon |
| TCONS_00055494-exon-scaffold_253-1491911889:388748..389169 | TCONS_00055494-exon-scaffold_253-1491911889:388748..389169 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:388748..390141 - |
Blast
BLAST of TCONS_00055494 vs. Swiss-Prot (Human)
Match: ABHD6 (Monoacylglycerol lipase ABHD6 OS=Homo sapiens GN=ABHD6 PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 3.607e-38 Identity = 70/204 (34.31%), Postives = 124/204 (60.78%), Query Frame = 1
Query: 1 SITNYVDKIHQFVQAVGLNKKKFHIVGESMGGHIAGVYSATHPSSIEKTTLMCPHGIKF---DQMEKMKAEYERSGHC---ILLPDSLQTVREMFECVLHKKFPFPDFVLNGILQMRLQNDDFNKKLLLRLVSSEDEDLLERSLHNIRSPCTLLWGKQDKILDVSCADKIKSNLPNLKKTVIFDDAGHVLSIDCPRKVANNLME 594
SI V +IHQFV+ + LNKK FH+VG SMGG +AGVY+A +PS + L+CP G+++ +Q + E + S L+P + + + EM + + +F P +L G++ +R+ +++F +KL L +VS + L +++ I+ P ++WGKQD++LDVS AD + ++ N + + ++ GH + ++ PRK A +++
Sbjct: 120 SIDGQVKRIHQFVECLKLNKKPFHLVGTSMGGQVAGVYAAYYPSDVSSLCLVCPAGLQYSTDNQFVQRLKELQGSAAVEKIPLIPSTPEEMSEMLQLCSYVRFKVPQQILQGLVDVRIPHNNFYRKLFLEIVSEKSRYSLHQNMDKIKVPTQIIWGKQDQVLDVSGADMLAKSIANC-QVELLENCGHSVVMERPRKTAKLIID 322
The following BLAST results are available for this feature:
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