TCONS_00055505 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055505
Unique NameTCONS_00055505
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055505 ID=TCONS_00055505|Name=TCONS_00055505|organism=Clytia hemisphaerica|type=transcript|length=342bp
GTATTTCTGAAGGATTAACTATTCTTTACTTTTCCAGGAACCCGCTGGAT
GCAAGAAATTGTCTCTTGTCTGAGGAATGGCTNTAGTATTTCTAAAGGAT
TTACTATTCTTTACTTTTCCAGGAACCCGCTGGATGCAAGAAATTGTCTC
TTGTCTGAGGAATGGCTTGGATTTTGAGAAAGCAAAATCAAGTCCTCTAG
ACTTAAGAGTACCTTTCTTTGaTTTTTCAGCCGCCTCTAATAGGGTAGAA
AAGGTACTCAAAGCTGTAGGTTCTTCTTGCAAAACAGGAGCTGAACTTGT
TAATCATACACTTCGACCAAGGAGCATAAAAACCCATCTCAG
Run BLAST on NCBI

transcript from alignment at scaffold_253:447989..448519-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055505 ID=TCONS_00055505|Name=TCONS_00055505|organism=Clytia hemisphaerica|type=transcript|length=531bp|location=Sequence derived from alignment at scaffold_253:447989..448519- (Clytia hemisphaerica)
GTATTTCTGAAGGATTAACTATTCTTTACTTTTCCAGGAACCCGCTGGAT
GCAAGAAATTGTCTCTTGTCTGAGGAATGGCTNTAGTATTTCTAAAGGAT
TTACTATTCTTTACTTTTCCAGGAACCCGCTGGATGCAAGAAATTGTCTC
TTGTCTGAGGAATGGCTTGGATTTTGAGAAAGCAAAATCAAGTCCTCTAG
ACTTAAGAGTACCTTTCTTTGAGTAAATATCTTTTTTTTATAGTTAGAAG
TATTGGCTGAAATTCTTGGGCTGAACTAAATAGGAAATATCAAAACTGAA
GATAAGATTGAAATAGATATTCAAAAGATTAACAGAATGATAATCAACTC
AACTTTCTTTGTAGCCAATAAGTATCAATGGTCTAAAATAAATAATCTTT
TCTCATTTTAGTTTTTCAGCCGCCTCTAATAGGGTAGAAAAGGTACTCAA
AGCTGTAGGTTCTTCTTGCAAAACAGGAGCTGAACTTGTTAATCATACAC
TTCGACCAAGGAGCATAAAAACCCATCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034918XLOC_034918Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055505-exon-scaffold_253-1575043694:448298..448519TCONS_00055505-exon-scaffold_253-1575043694:448298..448519Clytia hemisphaericaexon
TCONS_00055505-exon-scaffold_253-1575043694:447989..448108TCONS_00055505-exon-scaffold_253-1575043694:447989..448108Clytia hemisphaericaexon
TCONS_00055505-exon-scaffold_253-1510915933:448298..448519TCONS_00055505-exon-scaffold_253-1510915933:448298..448519Clytia hemisphaericaexon
TCONS_00055505-exon-scaffold_253-1510915933:447989..448108TCONS_00055505-exon-scaffold_253-1510915933:447989..448108Clytia hemisphaericaexon
TCONS_00055505-exon-scaffold_253-1491911889:448298..448519TCONS_00055505-exon-scaffold_253-1491911889:448298..448519Clytia hemisphaericaexon
TCONS_00055505-exon-scaffold_253-1491911889:447989..448108TCONS_00055505-exon-scaffold_253-1491911889:447989..448108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:447989..448519 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.67443	4.36387	2.87196	0.68261	16.9071	11.3704	22.9775	26.4148	19.0903	18.09	17.7658	15.1944	16.7875	17.6177	16.8724	20.6679	24.2146	19.4022	5.08779	6.22377	12.3904	9.1022	12.5333	13.7395	18.9021	17.555	13.6585	11.5068	16.5525	11.1254
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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