TCONS_00055507 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055507
Unique NameTCONS_00055507
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055507 ID=TCONS_00055507|Name=TCONS_00055507|organism=Clytia hemisphaerica|type=transcript|length=246bp
TTACTTTTCCAGGAACCCGCTGGATGCAAGAAATTGTCTCTTGTCTGAGG
AATGGCTTGGATTTTGAGAAAGCAAAATCAAGTCCTCTAGGCTTAAGAGT
ACCTTTCTTTGATTATTCAGCCGTCACTAATAACGCAGAAAAGGTACTCA
AAGCTACGGGTTCTTCTTACAAAACAGGAGCTGAACTTGTTAATCATACA
CTTCGACCAAGGACCATAAAAACCCATCTCAGCTATGAAATATTGC
Run BLAST on NCBI

transcript from alignment at scaffold_253:451253..451627-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055507 ID=TCONS_00055507|Name=TCONS_00055507|organism=Clytia hemisphaerica|type=transcript|length=375bp|location=Sequence derived from alignment at scaffold_253:451253..451627- (Clytia hemisphaerica)
TTACTTTTCCAGGAACCCGCTGGATGCAAGAAATTGTCTCTTGTCTGAGG
AATGGCTTGGATTTTGAGAAAGCAAAATCAAGTCCTCTAGGCTTAAGAGT
ACCTTTCTTTGAGTAAATATGTTTTTTTATATTTAGAAGTATTGGCTGAA
ATTCTTTGGTTGAACTAAATGGGAAATATCAAAACTGAAGATAACAGAAT
GACATCAATGGTCTAAAATACATAATCTTTTCTCATTTTAGTTATTCAGC
CGTCACTAATAACGCAGAAAAGGTACTCAAAGCTACGGGTTCTTCTTACA
AAACAGGAGCTGAACTTGTTAATCATACACTTCGACCAAGGACCATAAAA
ACCCATCTCAGCTATGAAATATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034920XLOC_034920Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055507-exon-scaffold_253-1575043694:451516..451627TCONS_00055507-exon-scaffold_253-1575043694:451516..451627Clytia hemisphaericaexon
TCONS_00055507-exon-scaffold_253-1575043694:451253..451386TCONS_00055507-exon-scaffold_253-1575043694:451253..451386Clytia hemisphaericaexon
TCONS_00055507-exon-scaffold_253-1510915933:451516..451627TCONS_00055507-exon-scaffold_253-1510915933:451516..451627Clytia hemisphaericaexon
TCONS_00055507-exon-scaffold_253-1510915933:451253..451386TCONS_00055507-exon-scaffold_253-1510915933:451253..451386Clytia hemisphaericaexon
TCONS_00055507-exon-scaffold_253-1491911889:451516..451627TCONS_00055507-exon-scaffold_253-1491911889:451516..451627Clytia hemisphaericaexon
TCONS_00055507-exon-scaffold_253-1491911889:451253..451386TCONS_00055507-exon-scaffold_253-1491911889:451253..451386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:451253..451627 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
48.4016	32.0844	21.9252	32.4793	14.9357	15.1336	28.5869	43.3617	41.8904	26.9023	35.788	21.205	15.92	13.3904	30.0379	31.3109	33.9355	36.2626	5.04579	9.20459	38.0042	25.6469	55.4292	61.3599	35.7519	30.4439	50.0641	40.3553	62.0236	44.5524
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055507 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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