Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055529 ID=TCONS_00055529|Name=TCONS_00055529|organism=Clytia hemisphaerica|type=transcript|length=2192bp ctagaaaatgagaaatcagcaaaaatcaggtacaggccgaaggctagaag tcaatctctttggtaggatttgaagccaacaaatcctaccaaagttgcgc ggccttgagcggctcggctggtttttacacaaatgacagattgaaactaa aatttaccactaaatttcaaaaaaaatatcaatcgtaaacaaaggaattg ctagattcaatctgtcgtcaaaaatacggtgcATTTTTTAAGGCCTCACT TTTTCTTCCCTGAGAAGGGTTAGaaattctactctagcccttcgggcttt aaactcaatgtaaTAATCCCTTGTTTCAACCATTTTGTTATTTACAGGCA AGTAGAGAGAGTGCGTGTCCGATGAAAGGGCTCCCCGATCGTTTTTGAGT AACAGATTCTTAGATTTAGAAAGGTGGGTCTAATTCccagattttttatt taggaTTAGAAGAAATGTCAAACAGGGCCAACAAGTTGTGTACTGTAAAA AATGTCAACAGCAAATGACGAGAAAGAAAATCTTATGAATTCAACATCAA AAGATGTAGACGAAGGCTCACCGAGACATTGTCACAAAAGTCAAACATCG CTCAAAGTCTACCCACAGCGTTGGCTTATGTTGTTCATATTTTCACTATG TACGACTCTAAATGGTTTCATGTTTTTGGGCTTAAGCGCTGTCGCCAATG TAGCTTCTGCATATTATAACGTATCAACTGTAAGCATTGAATGGCTGGCG AATATGGGAGTCCttattttcgttttcgtttcgCTTCCAGTGGCTTATTT AGTATCAAGATATGGTGTTCGTATTGTATTAACTGTGGCAACTGGATTGA TGGTACTTTGTGCCGTATTTCAATATCTTGGAGCTGGAAAAGATGGCTAC ACTTATGTTTTGATAGGACAATTCTTTTATGGTGTTTCATACGGAAGTAT AGTACAAATTCCAGGACAACTTTCAGCAAATTGGTTTGCTCCTCATGAGA GAGGCATGTCAACAGCCATAGGGGTTTTAATGAATATTTTGGGAGTAGCT GTTGGATTCATACAACCCTCTCTTATGATACCTGCTAGTAATGACCTAAC TATTGTGGCTATTGGAAtggaaaactttttcaaatccaGGCTTATTGTTG CACTTATTATTTTCTTGGTAACATTGATCTTGTATAGAGAATACCCACCT TCACCACCTTCTATTATTCCTGATCGAAAGAACTTAACTTTTTTGCAATC GCTGAAAATGTTGTACAAAGATGTTAATTTTCAAATGGTAGCACAAGCTT TCGGTATCAACAGTGGATTGCTTTTAGCTGTAGCTGTTGTCCTGTCGCAG CTTGTGGTCTGGAGACACGGAGCAAGTCCAGCAATTCAGCATTTTATCGG ATGGACGGGTGCCATGGGCGATATCGCTGCTTGTGCTAGTATGCTAGTGG GCGGTTTTGTTCAAGATCGCTACTCCAAGCACAGAGAGCTAGCAATTGTT TTGAACGCTGGATCATTTATTTTTTGGTTAGTATTTGCATTGGTGTTAAC GCTATCCAACAATCTTTACATCTTGTTTTTGTCGTATGccatttttgctg tttttagcATTCCATATTTTGGATCTGGGATTGAACATATTGCAGAAATG ACGTCCCCTGTACCAGAAGGCACCTCTAGTTCGATTGTgttgattttatc aaatatatatGGTTTCATCACAATTTACGCATTCGGTAAATTGATAGAGA GTGGATTCCCTTTAACTACAATTTGTCTGATCTTGTTGTTATATCTTTTA TCAACAATTTTTGTGACTTTCGCAAAGACTGAATTGAAGCGATCAAAAAC CGAAAGTACTTCCATTATGATTGAGTTTGATTGGTCAGACGATGAGGTGG ACATTGATGGCCAGAATAAGGTGTTTTTGGATGATACACCTTAGGTAAAA AGACAGTAAACACCTTTTAACCCACTCAGCACCCTGGCGGAGGGGCGGAG GGTAACTATCAGACCTTTCAAGGATAGTTTTTTCTAGTGTACTGTACACC CTTTATataatttaataaatttttttataattagaaaaagattttgatat ggaagagaaatttcaaatttcgatattttttagttgGTTAGGATATGATT ACGAACCGTCCAATTGTTCAATAATTGATGGTTACTTTTCCA Run BLAST on NCBI protein sequence of TCONS_00055529-protein >TCONS_00055529-protein ID=TCONS_00055529-protein|Name=TCONS_00055529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp
MSTANDEKENLMNSTSKDVDEGSPRHCHKSQTSLKVYPQRWLMLFIFSLC TTLNGFMFLGLSAVANVASAYYNVSTVSIEWLANMGVLIFVFVSLPVAYL VSRYGVRIVLTVATGLMVLCAVFQYLGAGKDGYTYVLIGQFFYGVSYGSI VQIPGQLSANWFAPHERGMSTAIGVLMNILGVAVGFIQPSLMIPASNDLT IVAIGMENFFKSRLIVALIIFLVTLILYREYPPSPPSIIPDRKNLTFLQS LKMLYKDVNFQMVAQAFGINSGLLLAVAVVLSQLVVWRHGASPAIQHFIG WTGAMGDIAACASMLVGGFVQDRYSKHRELAIVLNAGSFIFWLVFALVLT LSNNLYILFLSYAIFAVFSIPYFGSGIEHIAEMTSPVPEGTSSSIVLILS NIYGFITIYAFGKLIESGFPLTTICLILLLYLLSTIFVTFAKTELKRSKT ESTSIMIEFDWSDDEVDIDGQNKVFLDDTP Run BLAST on NCBI transcript from alignment at scaffold_253:749905..752230- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055529 ID=TCONS_00055529|Name=TCONS_00055529|organism=Clytia hemisphaerica|type=transcript|length=2326bp|location=Sequence derived from alignment at scaffold_253:749905..752230- (Clytia hemisphaerica) CTAGAAAATGAGAAATCAGCAAAAATCAGGTACAGGCCGAAGGCTAGAAG
TCAATCTCTTTGGTAGGATTTGAAGCCAACAAATCCTACCAAAGTTGCGC
GGCCTTGAGCGGCTCGGCTGGTTTTTACACAAATGACAGATTGAAACTAA
AATTTACCACTAAATTTCAAAAAAAATATCAATCGTAAACAAAGGAATTG
CTAGATTCAATCTGTCGTCAAAAATACGGTGCATTTTTTAAGGCCTCACT
TTTTCTTCCCTGAGAAGGGTTAGAAATTCTACTCTAGCCCTTCGGGCTTT
AAACTCAATGTAATAATCCCTTGTTTCAACCATTTTGTTATTTACAGGCA
AGTAGAGAGAGTGCGTGTCCGATGAAAGGGCTCCCCGATCGTTTTTGAGT
AACAGATTCTTAGATTTAGAAAGGTGGGTCTAATTCCCAGATTTTTTATT
TAGGATTAGAAGAAATGTCAAACAGGGCCAACAAGTTGTGGTAAGCACTA
AATATCATTGTTTCCTTATATCTGGCATCTTTACAGACATTTCACCGCAT
ACATAATGAAGGATCTTTGGTGCACAGACTGACAGAGATCTCGTTTTTTC
TCATTTCATCTTTTCTACTTCTAGTACTGTAAAAAATGTCAACAGCAAAT
GACGAGAAAGAAAATCTTATGAATTCAACATCAAAAGATGTAGACGAAGG
CTCACCGAGACATTGTCACAAAAGTCAAACATCGCTCAAAGTCTACCCAC
AGCGTTGGCTTATGTTGTTCATATTTTCACTATGTACGACTCTAAATGGT
TTCATGTTTTTGGGCTTAAGCGCTGTCGCCAATGTAGCTTCTGCATATTA
TAACGTATCAACTGTAAGCATTGAATGGCTGGCGAATATGGGAGTCCTTA
TTTTCGTTTTCGTTTCGCTTCCAGTGGCTTATTTAGTATCAAGATATGGT
GTTCGTATTGTATTAACTGTGGCAACTGGATTGATGGTACTTTGTGCCGT
ATTTCAATATCTTGGAGCTGGAAAAGATGGCTACACTTATGTTTTGATAG
GACAATTCTTTTATGGTGTTTCATACGGAAGTATAGTACAAATTCCAGGA
CAACTTTCAGCAAATTGGTTTGCTCCTCATGAGAGAGGCATGTCAACAGC
CATAGGGGTTTTAATGAATATTTTGGGAGTAGCTGTTGGATTCATACAAC
CCTCTCTTATGATACCTGCTAGTAATGACCTAACTATTGTGGCTATTGGA
ATGGAAAACTTTTTCAAATCCAGGCTTATTGTTGCACTTATTATTTTCTT
GGTAACATTGATCTTGTATAGAGAATACCCACCTTCACCACCTTCTATTA
TTCCTGATCGAAAGAACTTAACTTTTTTGCAATCGCTGAAAATGTTGTAC
AAAGATGTTAATTTTCAAATGGTAGCACAAGCTTTCGGTATCAACAGTGG
ATTGCTTTTAGCTGTAGCTGTTGTCCTGTCGCAGCTTGTGGTCTGGAGAC
ACGGAGCAAGTCCAGCAATTCAGCATTTTATCGGATGGACGGGTGCCATG
GGCGATATCGCTGCTTGTGCTAGTATGCTAGTGGGCGGTTTTGTTCAAGA
TCGCTACTCCAAGCACAGAGAGCTAGCAATTGTTTTGAACGCTGGATCAT
TTATTTTTTGGTTAGTATTTGCATTGGTGTTAACGCTATCCAACAATCTT
TACATCTTGTTTTTGTCGTATGCCATTTTTGCTGTTTTTAGCATTCCATA
TTTTGGATCTGGGATTGAACATATTGCAGAAATGACGTCCCCTGTACCAG
AAGGCACCTCTAGTTCGATTGTGTTGATTTTATCAAATATATATGGTTTC
ATCACAATTTACGCATTCGGTAAATTGATAGAGAGTGGATTCCCTTTAAC
TACAATTTGTCTGATCTTGTTGTTATATCTTTTATCAACAATTTTTGTGA
CTTTCGCAAAGACTGAATTGAAGCGATCAAAAACCGAAAGTACTTCCATT
ATGATTGAGTTTGATTGGTCAGACGATGAGGTGGACATTGATGGCCAGAA
TAAGGTGTTTTTGGATGATACACCTTAGGTAAAAAGACAGTAAACACCTT
TTAACCCACTCAGCACCCTGGCGGAGGGGCGGAGGGTAACTATCAGACCT
TTCAAGGATAGTTTTTTCTAGTGTACTGTACACCCTTTATATAATTTAAT
AAATTTTTTTATAATTAGAAAAAGATTTTGATATGGAAGAGAAATTTCAA
ATTTCGATATTTTTTAGTTGGTTAGGATATGATTACGAACCGTCCAATTG
TTCAATAATTGATGGTTACTTTTCCA Coding sequence (CDS) from alignment at scaffold_253:749905..752230- >TCONS_00055529 ID=TCONS_00055529|Name=TCONS_00055529|organism=Clytia hemisphaerica|type=CDS|length=1443bp|location=Sequence derived from alignment at scaffold_253:749905..752230- (Clytia hemisphaerica) ATGTCAACAGCAAATGACGAGAAAGAAAATCTTATGAATTCAACATCAAA AGATGTAGACGAAGGCTCACCGAGACATTGTCACAAAAGTCAAACATCGC TCAAAGTCTACCCACAGCGTTGGCTTATGTTGTTCATATTTTCACTATGT ACGACTCTAAATGGTTTCATGTTTTTGGGCTTAAGCGCTGTCGCCAATGT AGCTTCTGCATATTATAACGTATCAACTGTAAGCATTGAATGGCTGGCGA ATATGGGAGTCCTTATTTTCGTTTTCGTTTCGCTTCCAGTGGCTTATTTA GTATCAAGATATGGTGTTCGTATTGTATTAACTGTGGCAACTGGATTGAT GGTACTTTGTGCCGTATTTCAATATCTTGGAGCTGGAAAAGATGGCTACA CTTATGTTTTGATAGGACAATTCTTTTATGGTGTTTCATACGGAAGTATA GTACAAATTCCAGGACAACTTTCAGCAAATTGGTTTGCTCCTCATGAGAG AGGCATGTCAACAGCCATAGGGGTTTTAATGAATATTTTGGGAGTAGCTG TTGGATTCATACAACCCTCTCTTATGATACCTGCTAGTAATGACCTAACT ATTGTGGCTATTGGAATGGAAAACTTTTTCAAATCCAGGCTTATTGTTGC ACTTATTATTTTCTTGGTAACATTGATCTTGTATAGAGAATACCCACCTT CACCACCTTCTATTATTCCTGATCGAAAGAACTTAACTTTTTTGCAATCG CTGAAAATGTTGTACAAAGATGTTAATTTTCAAATGGTAGCACAAGCTTT CGGTATCAACAGTGGATTGCTTTTAGCTGTAGCTGTTGTCCTGTCGCAGC TTGTGGTCTGGAGACACGGAGCAAGTCCAGCAATTCAGCATTTTATCGGA TGGACGGGTGCCATGGGCGATATCGCTGCTTGTGCTAGTATGCTAGTGGG CGGTTTTGTTCAAGATCGCTACTCCAAGCACAGAGAGCTAGCAATTGTTT TGAACGCTGGATCATTTATTTTTTGGTTAGTATTTGCATTGGTGTTAACG CTATCCAACAATCTTTACATCTTGTTTTTGTCGTATGCCATTTTTGCTGT TTTTAGCATTCCATATTTTGGATCTGGGATTGAACATATTGCAGAAATGA CGTCCCCTGTACCAGAAGGCACCTCTAGTTCGATTGTGTTGATTTTATCA AATATATATGGTTTCATCACAATTTACGCATTCGGTAAATTGATAGAGAG TGGATTCCCTTTAACTACAATTTGTCTGATCTTGTTGTTATATCTTTTAT CAACAATTTTTGTGACTTTCGCAAAGACTGAATTGAAGCGATCAAAAACC GAAAGTACTTCCATTATGATTGAGTTTGATTGGTCAGACGATGAGGTGGA CATTGATGGCCAGAATAAGGTGTTTTTGGATGATACACCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00055529-exon-scaffold_253-1575043694:751741..752230 | TCONS_00055529-exon-scaffold_253-1575043694:751741..752230 | Clytia hemisphaerica | exon |
TCONS_00055529-exon-scaffold_253-1575043694:749905..751606 | TCONS_00055529-exon-scaffold_253-1575043694:749905..751606 | Clytia hemisphaerica | exon |
TCONS_00055529-exon-scaffold_253-1510915933:751741..752230 | TCONS_00055529-exon-scaffold_253-1510915933:751741..752230 | Clytia hemisphaerica | exon |
TCONS_00055529-exon-scaffold_253-1510915933:749905..751606 | TCONS_00055529-exon-scaffold_253-1510915933:749905..751606 | Clytia hemisphaerica | exon |
TCONS_00055529-exon-scaffold_253-1491911889:751741..752230 | TCONS_00055529-exon-scaffold_253-1491911889:751741..752230 | Clytia hemisphaerica | exon |
TCONS_00055529-exon-scaffold_253-1491911889:749905..751606 | TCONS_00055529-exon-scaffold_253-1491911889:749905..751606 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_253 | supercontig | scaffold_253:749905..752230 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0055085 |
transmembrane transport |
cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00055529 vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 4.341e-33 Identity = 104/428 (24.30%), Postives = 215/428 (50.23%), Query Frame = 1 Query: 601 LKVYPQRWLMLFIFSLCTTLNGFMFLGLXXXXXXXXXXXXXXTVSIEWLANMGVLIFVFVSLPVAYLVSRYGVRIVLTVATGLMVLCAVFQYLGAGKDGYTYVLIGQFFYGVSYGSIVQIPGQLSANWFAPHERGMSTAIGVLMNILGVAVGFIQPSLMIPASNDLTIVAIGMENFFKSRLIVALIIFLVTLILYREYPPSPPSIIPD------RKNLTFLQSLKMLYKDVNFQMVAQAFGINSGXXXXXXXXXXXXXXWRHGASPAIQHFIGWTGAMGDIAACASMLVGGFVQDRYSKHRELAIVLNAGSFIFWLVFALVLTLSNNLYILFLSYAIFAVFSIPYFGSGIEHIAEMTSPVPEGTSSSIVLILSNIYGFITIYAFGKLIESGFPXXXXXXXXXXXXXXXXFVTFAKTELKRSKTESTSI 1866
+KV +RW ++ +FS + N F ++ ++ N+ +Y VS +I+WL+ +L ++ + LPVA+L+ ++G+R + + L L A + + ++GQ V+ I+ +P ++++ WF +E + ++ V N LG+A+GF+ P +++P D +A + F VA ++ ++ +I+++E P PPS + ++L S+ L+K++NF ++ +G+N+G A++ +L+++V+W + P + G G IA ++ G DR ++E +V+ + + +V+ L L +L+++F++ F Y G E E+T P EG SS ++ I + ++G I + G++I++ + + L F K +L+R K ++
Sbjct: 78 IKVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDRDELAYHISIMFYIIGGVATLLLILVIIVFKEKPKYPPSRAQSLSYALTSPDASYLGSIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHY---PGEEVNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMTLVGMVVYTFTLNL-GHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDNYGTKPGNIFLCVFLTLGAALTAFIKADLRRQKANKETL 501
The following BLAST results are available for this feature:
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