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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055539 ID=TCONS_00055539|Name=TCONS_00055539|organism=Clytia hemisphaerica|type=transcript|length=5765bpRun BLAST on NCBI transcript from alignment at scaffold_253:812241..839359- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055539 ID=TCONS_00055539|Name=TCONS_00055539|organism=Clytia hemisphaerica|type=transcript|length=27119bp|location=Sequence derived from alignment at scaffold_253:812241..839359- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055539 vs. Swiss-Prot (Human)
Match: DEN5A (DENN domain-containing protein 5A OS=Homo sapiens GN=DENND5A PE=1 SV=2) HSP 1 Score: 344.354 bits (882), Expect = 8.455e-97 Identity = 185/434 (42.63%), Postives = 272/434 (62.67%), Query Frame = 3
Query: 3873 RLDFLSNLKTVLDMKEIKTDTGYARAWXXXXXXXXXXXXXXXXXXGNKKILSTRYKDYAFIRTDDEIEQFLFHLLSLNAVDFYCFTNGFSNTLITYKVQVVMGKQMG-SATTANCWLNLAGKSGNTGTVNIPKGDLEFRFRHKNLGILTALRIGHDNTGISAGWFIEFVAVMNEVTGHTYKFQCGRWLAKNQDDGSTERLLVAELLNVKRRNERKQSSHQRISDRQVGEQQTHRSSKKLNIFN----KKVTSNDIQERVADSVNNMVKYFFKNSDE--NMTKLLCGNEGFCQSIELVFKYGYKSSKFFTKKLFVWDYIERVHDDFLN-KKSETAYLESTQLNIRSSFCITVQTINTAALSIGKDQKFELFICLGLRDHHLQSWFRLLHDSNVTNHMYEQNSFFRDGTLLNFLIEVLEALKEFSVVLDKSITRGI 5150
R+ + +++ + ++ EIKTD G ARAW RL++EKK L++ L+ LL + ++ YK YAF+R DDE EQFL+HLLS NAVD++CFTN F+ LI Y + +V K++G S TAN W+ ++G+ G T + IP+ LE F +NLG LT ++IGHDN+G+ A W +E+V V NE+TGHTYKF CGRWL K DDGS ER+LV ELL + + + R QQ+ ++L + K+ + IQE + ++VN +VK+F K E ++T LLCG G ++E F++G+KS + F K +F+WD++E+ + +K+E E+ R +FC V IN +IGKD KF++ +CLG RDH L W LL D +T HMYE + +D TL+N LI VL+ L+EF++ L+ S+ +GI
Sbjct: 861 RISLIQDMRHIQNIGEIKTDVGKARAWVRLSMEKKLLSRHLKQLLSDHELTKKLYKRYAFLRCDDEKEQFLYHLLSFNAVDYFCFTNVFTTILIPYHILIVPSKKLGGSMFTANPWICISGELGETQIMQIPRNVLEMTFECQNLGKLTTVQIGHDNSGLYAKWLVEYVMVRNEITGHTYKFPCGRWLGKGMDDGSLERILVGELLTSQPEVDERPC-------RTPPLQQSPSVIRRLVTISPNNKPKLNTGQIQESIGEAVNGIVKHFHKPEKERGSLTLLLCGECGLVSALEQAFQHGFKSPRLF-KNVFIWDFLEKAQTYYETLEKNEVVPEENWHTRAR-NFCRFVTAINNTPRNIGKDGKFQMLVCLGARDHLLHHWIALLADCPITAHMYEDVALIKDHTLVNSLIRVLQTLQEFNITLETSLVKGI 1285 HSP 2 Score: 321.627 bits (823), Expect = 1.467e-89 Identity = 168/426 (39.44%), Postives = 247/426 (57.98%), Query Frame = 3
Query: 729 RLVDYFVICGLD-----------------------ECXXXXXXXXXXXXXXXXTPFQLSYKPSVLWHYPENDLSNVFEAEGIKLLCMPRGVYFRKYITRNQRKFHSFLQTREDGTKIYGFVLTFFEEIKNTKLLLAMDTLFKMFDLEL-LSKSTPASNQ----ILDRKEKKRRRVQRGRSVYSFNKEVEPLYASKCISLIMKQPFFTLAHQLLENILDIGLSESKQNLTVESYVYNALYEVPCPPPGRSMKYVSTEGDPIIITKPLLNELPYFDYSLKEVLMTLGYENLVDLFTCLLLEHQILFLSGDIHKLMLIAEALTTLFFPLSWEHVYVPVLPPSLLHYLDAPVPFIMGLYYETEEEKNRFEIPCEGSLCLLDIDQNDIQLPQEIPELPGRQELIKELSEIAEKFNITPPQGSLRLRHEISR 1922
R DYFVICGLD + + + TP + ++K VL YPEN N F+ + + +LCMP+G+ F+ + +FH+F+ TREDG++ +GF LTF+EE+ + ++ AM TL+ M + E + + PA ++ + D ++ ++QR S Y +++ LY SKCI LI F +LE + S L +ESY+YN LYEVP PPPGRS+K+ G PII +P NELP FD+ +KEV LG EN+ LFTC LLE QIL S +LM +AE +T L FP W+HVYVP+LP SLLH+LDAPVP++MGL+ +++++ E+P E +LC +DID + I+LP+++P+ P + E ++E+SEI F I PP+G+L S+
Sbjct: 14 RFADYFVICGLDTETGLEPDELSALCQYIQASKARDGASPFISSTTEGENFEQTPLRRTFKSKVLARYPENVEWNPFDQDAVGMLCMPKGLAFKTQADPREPQFHAFIITREDGSRTFGFALTFYEEVTSKQICSAMQTLYHMHNAEYDVLHAPPADDRDQSSMEDGEDTPVTKLQRFNS-YDISRDT--LYVSKCICLITPMSFMKACRSVLEQLHQAVTSPQPPPLPLESYIYNVLYEVPLPPPGRSLKFSGVYG-PIICQRPSTNELPLFDFPVKEVFELLGVENVFQLFTCALLEFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPILPASLLHFLDAPVPYLMGLHSNGLDDRSKLELPQEANLCFVDIDNHFIELPEDLPQFPNKLEFVQEVSEILMAFGI-PPEGNLHCSESASK 434 HSP 3 Score: 275.789 bits (704), Expect = 3.987e-75 Identity = 172/442 (38.91%), Postives = 249/442 (56.33%), Query Frame = 3
Query: 2343 AETPEKVMNPRLAAVMAIAENAGINTS-----EILK-----GRYKSAVEQSRLQTTDLTKKEDLFVFGNRAMTVTRKQQHENEFNIAVREIFVNRFTQMLVDYEQFVILPKQTKEDWFNNRDQMQNFDKAAFLSDQSESILQFMTLFVETQGFASLIDMKIMAL-WEDCDPRLQYFDKRIDKLK---VKLGIIRSSEYEKCTSVPQAIETNLKRCGHIDHVASQPHTLKTPIERSKV-PGYFPLPVKAALVETK------RKKAGKINWRKRDKAQQQTEHIQLSEALKNTQDEGQXXXXXXXXXXXXYMQDSKMITKDMAQ------SSTVGHKTLFAFADKLLKECKIKTKRLVVLKLGQEAVELGHAGPNSSGIEENTLIASLCDLLERVWSHGVQLKQLEFGKEHAKSRFVQRMRQSKSALWSHLVAFYQRESERLAA 3587
+E+ K+ R + +++ N I S E+LK R ++ V+++ + L +ED + + ++ + NI +RE+F NRFTQM DYE FVI P Q KE WF NR+QMQNFDKA+FLSDQ E L F++ F+ETQ FAS ID KIM +D DP L+ FD R+DK++ V+ +R+S Y+KCT+V +A + R IDH A PH L I + K PG+FP +++ ++ T K+ WR++D+ +Q TEH++L N Q E KY+Q+++ + + Q S +V +T + F + LLKEC+ KTKR++V K+G+EAVELGH N +G+EENTLIASLCDLLER+WSHG+Q+K Q KSALWSHL+ + +L +
Sbjct: 429 SESASKLKRLRASELVSDKRNGNIAGSPLHSYELLKENETIARLQALVKRTGVSLEKLEVREDPSSNKDLKVQCDEEELRIYQLNIQIREVFANRFTQMFADYEVFVIQPSQDKESWFTNREQMQNFDKASFLSDQPEPYLPFLSRFLETQMFASFIDNKIMCHDDDDKDPVLRVFDSRVDKIRLLNVRTPTLRTSMYQKCTTVDEAEKAIELRLAKIDHTAIHPHLLDMKIGQGKYEPGFFP-KLQSDVLSTGPASNKWTKRNAPAQWRRKDRQKQHTEHLRLD----NDQRE-------------KYIQEARTMGSTIRQPKLSNLSPSVIAQTNWKFVEGLLKECRNKTKRMLVEKMGREAVELGHGEVNITGVEENTLIASLCDLLERIWSHGLQVK------------------QGKSALWSHLLHYQDNRQRKLTS 834 The following BLAST results are available for this feature:
BLAST of TCONS_00055539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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