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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055544 ID=TCONS_00055544|Name=TCONS_00055544|organism=Clytia hemisphaerica|type=transcript|length=1656bpRun BLAST on NCBI protein sequence of TCONS_00055544-protein >TCONS_00055544-protein ID=TCONS_00055544-protein|Name=TCONS_00055544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=500bp MAGVPAGFEDDDSDGDFGAYDYNEEDYQNDLNNDPSSQSTQQQIYDENPPRun BLAST on NCBI transcript from alignment at scaffold_253:912878..919142- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055544 ID=TCONS_00055544|Name=TCONS_00055544|organism=Clytia hemisphaerica|type=transcript|length=6265bp|location=Sequence derived from alignment at scaffold_253:912878..919142- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:912878..919142- >TCONS_00055544 ID=TCONS_00055544|Name=TCONS_00055544|organism=Clytia hemisphaerica|type=CDS|length=21042bp|location=Sequence derived from alignment at scaffold_253:912878..919142- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055544 vs. Swiss-Prot (Human)
Match: ASZ1 (Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 OS=Homo sapiens GN=ASZ1 PE=1 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.699e-40 Identity = 90/288 (31.25%), Postives = 159/288 (55.21%), Query Frame = 3
Query: 381 AISEGNVEYLKSALEKGFKPDTTLRSGWPALMYASSYGMVDIIELLLSNNVPVNQKSDSLTTLMVVTQSASTSGEDNVVTCAELLIKSGANVNDHDKHIMTPLMYAAQQGLSKLVKLLCENNAAVDMQDERGWTALCFAAINGYNHVVKVLLESNANLHLTTSEGQSPADLAFSNG----FSMLADLLEKYDGSNESLDKIPQMCSSLKKDGS-------AKYVNYGDLELFLFGQELGHLVPVMQDQHLSFLQLLKLDEQELIEAGVTKLGDRKKLFTALQNVRTNE 1211
A++ G+V ++ L+ G D+ + GW LMYA+S +++ +LL + + D + L +T ++ E+ ++ C ELL+ A+ N + +MTP+MYAA+ G +++V LL + A V+ QDE G+TAL +AA G+ ++V LLE AN L T +G+ P+++A N F++L+ L +G + L K +C L D + Y +GDLE+FL G L H+ +++++ ++ LL + E E + G+T D++K+ AL+ ++ E
Sbjct: 53 AMTIGDVSLVQELLDSGISVDSNFQYGWTPLMYAASVANAELVRVLLDRGANASFEKDKQSIL--ITACSAHGSEEQILKCVELLLSRNADPNVACRRLMTPIMYAARDGHTQVVALLVAHGAEVNTQDENGYTALTWAARQGHKNIVLKLLELGANKMLQTKDGKMPSEIAKRNKHHEIFNLLSFTLNPLEGKLQQLTKEDTICKILTTDSDREKDHIFSSYTAFGDLEVFLHGLGLEHMTDLLKERDITLRHLLTMREDEFTKNGITS-KDQQKILAALKELQVEE 337 The following BLAST results are available for this feature:
BLAST of TCONS_00055544 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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