TCONS_00055568 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055568
Unique NameTCONS_00055568
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055568 ID=TCONS_00055568|Name=TCONS_00055568|organism=Clytia hemisphaerica|type=transcript|length=1645bp
GGAAAACTCGAAAAAAGACATGGGCATAGTGAAGGTTTGGTACTTTGCTG
TTTTGACTTTGTTGTCAACGCAATTGTTGAATTGtttgcCACACAGAAGA
TCACGTCGAATGGTGAATGGGGAAGATGCGAAACTAGTGGACTGGTATTT
CACAGTGTTGTTGGTGAAAGAGGTAGACGACCATCCATTGTACTGTGGCG
GTGTGCTCATAAAAAATGATTGGATACTGACTGCTGCTCACTGTGTGAGT
GGAGTTGTTGATCGTCCTCAACTTCTTTCGGTTAGAATAGGCTCGACCAA
GCGATCTTTACTGAAAGAATACACAAAATTTCAATATGAAGTGTCCAAAA
TCTACATCCATTCTGCCTACAATGATGAACAGATACCATCAGATGATATT
GCCCTGATCAAGCTGAAATACCCTATCGTCAGCAATCGATACAATTTTGT
ACGACCCATCGAGATTGCTTTGTGGCGATTCAAAGGTTCCGAGAGACACT
CCATGCATTGCCAAGCTGCAGGTTGGGGAAAAACCAAACCTTTCTCAAGT
ATTCAAGAAATGAATGACACAAAACATGAACCATcattatttcttcaaaa
aatcgaCGTTCCATTACTGAGCAGGAAGCATTGTATTTCTGAATTCGATA
AAGAAAATGGCACAACGATGTTGAGCAACAAGAATTTGTTTTGGAACAAA
ATGATGTGTGGTGGAAGCTCGAACCCGAATATAGGAACGCCCTGCCTCTA
TGACTCTGGATCTCCTTTAGTATGCAAAGATATCTACGGAAATCGTCAAC
TATACGGAATAGCTATTGCAATACATGGACCGGAAATTAACGAGCGACCT
TGCACACCCGGCAAACAAATCTCAGTTTTCCTTAGAGTACCACATTACGC
TAAGTGGAttattaaaacaataaaaaatgctCAGGAAATAGATGAGAAAT
AGTATGAAAGACTTGCTAATCCGTTTCTCAATAGAGGACGTTCTATGAAC
AGGGTCCgattgattttgatgttttgttgGTTATGatttgaaatcaatga
aaaactattttgaaatttgtcgCACTACCCACTCACAAAGCAAAATCAGA
GTGAATTCGTAGCTCGATTTCAGACAAGTTGTATGAACTAAACGAACGAA
TACATTGGCATTTCTGATGATGTTGACAATTACAAATTAAATTAGGCGTA
TACCAGACCCAATATCTTTGgaagtttcaaaattcatattAAAGGCTCTC
TTGTAACTTTTAATGCGATGAACGAGAGATACACTCGGTACAGAGTACAA
AAAACAGGACGCATTCAGGCAGCGCTTGTGAATAAAAAAAGGGAATAATG
CAATAGAAAAATCTGAAGACATTGTCATCTGACCTTTTCGTTCCTTCCTT
TTTTAATCCTTGAAcctgaaaaaataccaaattttgatgtCCCGGATATT
AAAAGATGTTCAAGACATTCCAAAAATACCTGGAGGACGGACGAGATAGA
TTTCTACTTAATTTTTATGTATATAtgaaacataattttttctttataaa
attaattataCTTTTGATAGAACTTGAACTATCATTGGAatattttctaa
tattttaaaCCATGCTGGTATTTTAAACAGAAAATCTGGTGCAgg
Run BLAST on NCBI

protein sequence of TCONS_00055568-protein

>TCONS_00055568-protein ID=TCONS_00055568-protein|Name=TCONS_00055568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
ENSKKDMGIVKVWYFAVLTLLSTQLLNCLPHRRSRRMVNGEDAKLVDWYF
TVLLVKEVDDHPLYCGGVLIKNDWILTAAHCVSGVVDRPQLLSVRIGSTK
RSLLKEYTKFQYEVSKIYIHSAYNDEQIPSDDIALIKLKYPIVSNRYNFV
RPIEIALWRFKGSERHSMHCQAAGWGKTKPFSSIQEMNDTKHEPSLFLQK
IDVPLLSRKHCISEFDKENGTTMLSNKNLFWNKMMCGGSSNPNIGTPCLY
DSGSPLVCKDIYGNRQLYGIAIAIHGPEINERPCTPGKQISVFLRVPHYA
KWIIKTIKNAQEIDEK
Run BLAST on NCBI

transcript from alignment at scaffold_253:1145558..1148903-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055568 ID=TCONS_00055568|Name=TCONS_00055568|organism=Clytia hemisphaerica|type=transcript|length=3346bp|location=Sequence derived from alignment at scaffold_253:1145558..1148903- (Clytia hemisphaerica)
GGAAAACTCGAAAAAAGACATGGGCATAGTGAAGGTTTGGTACTTTGCTG
TTTTGACTTTGTTGTCAACGCAATTGTTGAATTGGTAAGCTTTCTATAAG
ACTGTTGATATTCCCTAGTTCACCCTTCAGCATAAAAAAGTTACGAAAGT
TAGGTACGTTGAACTTTAAGTCGAAATCAACTTTGCAAGCATGATGAGGG
AAATTTCAAAAATGTTATAACAATTTTCCAGAAAATCCCGTTAGCAAAAT
TTCGTTTTCATTTTCAGTTTGCCACACAGAAGATCACGTCGAATGGTGAA
TGGGGAAGATGCGAAACTAGTGGACTGGTATTTCACAGTGTTGTTGGTGA
AAGAGGTAGACGACCATCCATTGTACTGTGGCGGTGTGCTCATAAAAAAT
GATTGGATACTGACTGCTGCTCACTGTGTGAGTGGAGTTGTTGATCGTCC
TCAACTTCTTTCGGTTAGAATAGGTGAGTGCTGTGCTTACTATCAACCGA
TAACTGTCAGTACATACAATACAGCTTTTTAGTCTAAATCTGTGATATGA
TCTTTTTAGAAGGGTTGTTAATTCGGTTTGTGTAGAAGACTTGCTGAAAT
AAACCCCCAGCTCATATGACCCTTCATAACAACTTATTTTTAATACAGGC
TCGACCAAGCGATCTTTACTGAAAGAATACACAAAATTTCAATATGAAGT
GTCCAAAATCTACATCCATTCTGCCTACAATGATGAACAGATACCATCAG
ATGATATTGCCCTGATCAAGCTGAAATACCCTATCGTCAGCAATCGATAC
AATTTTGTACGACCCATCGAGATTGCTTTGTGGCGATTCAAAGGTTCCGA
GAGACACTCCATGCATTGCCAAGCTGCAGGTTTGTCTGATGTTTTTCGTG
GGAATATTTACACCCCTGTTCTGTCGTTTAAGGATGATACAATATTGAGA
AATTTGTATATTTGCTGCTCCAGATTGTTATTATAATTTGTCTATTTGTC
TATTTGTCTATTCTTAGACAGATCAAAAAGCCTTAATAAGTGATTCGGGG
CTAGCTATTCAATAGACAATTACCAAATTTCATTCTAGTTGATGTAAATT
ATAAATTCTCATAAAAAAACAGTTTGTGATAAGTAATTTTTCTAAGAGGA
ATGAGAGTCATTATTGAGATTGTTTTGGATGTGAAACATTCCGTATGGTA
GGTTTACACTACAAAGCTTTTGCCTTAATAATGTGCCAAGGGAATGATGA
TGATGATAGGACGAAGAAGTCTCATTTAGACATGATTGTTTTAAAACAAA
AATTTCACTTTTTTTGTAATCAATTTACGCTGTTTTAAATAAGCATTGTG
TTAGTCATTTTAAGGCTCAGTAAAGAAACTTGTATGTAGATAACGTCATA
CGTCATTGATCGCCTTTTTTGCTTAACCACTTTTTACACTATGCCGTGAA
GTTTAGGAATCAGGCTAAAACGCCCCGGATTCAGTCTAAAAACTCACGTA
ATAGATTCTGTATGTCATAGATAGCTTCTTGCTTAACCTCGCTATTTTGT
ATTTTCGCCATCATAGGTTGGGGAAAAACCAAACCTTTCTCAAGTATTCA
AGAAATGAATGACACAAAACATGAACCATCATTATTTCTTCAAAAAATCG
ACGTTCCATTACTGAGCAGGAAGCATTGTATTTCTGAATTCGATAAAGAA
AATGGCACAACGATGTTGAGCAACAAGAATTTGTTTTGGAACAAAATGAT
GTGTGGTGGAAGCTCGAACCCGAATATAGGTAACAATTTGTCTTACATAG
ACATCCCTGACTCACTTGTCATATTCTCATAACAGATTACTAGATCTGCG
TATACCATGCTCTAAAATACCCCTGTCTCACAGCCCCGGTGGAACTTTTT
GCCTCATTAGGCCTAGGGGATAATAACTCCTATCGAAATGCCAATGGGGG
TACAAATTCTATTGTTCCAAGGTTAAAAAATCCATCCCGGTTTTGGAGTG
CAATTTTTAAACTTTGAATTTTTAATGGGGATGAAATAGTGGGGCTGAAA
TTTCTGCCAAATTTTCCAGTAGGGCTGGGGTCCCAGCGGGTCTGTGACAC
AGGGGTGTTCTAAAGGGATAAGCTTGTAAAATCAAGAGCATTTAATCATG
GAGGTATGAGAAAAACATGAGATATAATACTATAACCACCCTCGCCCTAC
AATTAAAACGTTGCGAGAAATGAAGTTTTTCTTTATACTTTAATGATTTA
ACTCTTATTTAACCCTTATTGGACAAGTATATACAGTAACCTCTTTTTTC
TAGTCAACACTACTTTGTTTTTAATGGAAATAAAAAGCAGTTTAGTTAGT
TTCATGCTAATCCATTGTGTTTTCATATGGCTTTCTCCTGAATGAAAGCT
TCGTTCCTAACTAAAAATATTACCTCTTGTTTTAGGAACGCCCTGCCTCT
ATGACTCTGGATCTCCTTTAGTATGCAAAGATATCTACGGAAATCGTCAA
CTATACGGAATAGCTATTGCAATACATGGACCGGAAATTAACGAGCGACC
TTGCACACCCGGCAAACAAATCTCAGTTTTCCTTAGAGTACCACATTACG
CTAAGTGGATTATTAAAACAATAAAAAATGCTCAGGAAATAGATGAGAAA
TAGTATGAAAGACTTGCTAATCCGTTTCTCAATAGAGGACGTTCTATGAA
CAGGGTCCGATTGATTTTGATGTTTTGTTGGTTATGATTTGAAATCAATG
AAAAACTATTTTGAAATTTGTCGCACTACCCACTCACAAAGCAAAATCAG
AGTGAATTCGTAGCTCGATTTCAGACAAGTTGTATGAACTAAACGAACGA
ATACATTGGCATTTCTGATGATGTTGACAATTACAAATTAAATTAGGCGT
ATACCAGACCCAATATCTTTGGAAGTTTCAAAATTCATATTAAAGGCTCT
CTTGTAACTTTTAATGCGATGAACGAGAGATACACTCGGTACAGAGTACA
AAAAACAGGACGCATTCAGGCAGCGCTTGTGAATAAAAAAAGGGAATAAT
GCAATAGAAAAATCTGAAGACATTGTCATCTGACCTTTTCGTTCCTTCCT
TTTTTAATCCTTGAACCTGAAAAAATACCAAATTTTGATGTCCCGGATAT
TAAAAGATGTTCAAGACATTCCAAAAATACCTGGAGGACGGACGAGATAG
ATTTCTACTTAATTTTTATGTATATATGAAACATAATTTTTTCTTTATAA
AATTAATTATACTTTTGATAGAACTTGAACTATCATTGGAATATTTTCTA
ATATTTTAAACCATGCTGGTATTTTAAACAGAAAATCTGGTGCAGG

Coding sequence (CDS) from alignment at scaffold_253:1145558..1148903-

>TCONS_00055568 ID=TCONS_00055568|Name=TCONS_00055568|organism=Clytia hemisphaerica|type=CDS|length=4755bp|location=Sequence derived from alignment at scaffold_253:1145558..1148903- (Clytia hemisphaerica)
GAACGCCCTGCCTCTATGACTCTGGATCTCCTTTAGTATGCAAAGATATC
TACGGAAATCGTCAACTATACGGAATAGCTATTGCAATACATGGACCGGA
AATTAACGAGCGACCTTGCACACCCGGCAAACAAATCTCAGTTTTCCTTA
GAGTACCACATTACGCTAAGTGGATTATTAAAACAATAAAAAATGCTCAG
GAAATAGATGAGAAATAGGTTGGGGAAAAACCAAACCTTTCTCAAGTATT
CAAGAAATGAATGACACAAAACATGAACCATCATTATTTCTTCAAAAAAT
CGACGTTCCATTACTGAGCAGGAAGCATTGTATTTCTGAATTCGATAAAG
AAAATGGCACAACGATGTTGAGCAACAAGAATTTGTTTTGGAACAAAATG
ATGTGTGGTGGAAGCTCGAACCCGAATATAGGCTCGACCAAGCGATCTTT
ACTGAAAGAATACACAAAATTTCAATATGAAGTGTCCAAAATCTACATCC
ATTCTGCCTACAATGATGAACAGATACCATCAGATGATATTGCCCTGATC
AAGCTGAAATACCCTATCGTCAGCAATCGATACAATTTTGTACGACCCAT
CGAGATTGCTTTGTGGCGATTCAAAGGTTCCGAGAGACACTCCATGCATT
GCCAAGCTGCAGTTTGCCACACAGAAGATCACGTCGAATGGTGAATGGGG
AAGATGCGAAACTAGTGGACTGGTATTTCACAGTGTTGTTGGTGAAAGAG
GTAGACGACCATCCATTGTACTGTGGCGGTGTGCTCATAAAAAATGATTG
GATACTGACTGCTGCTCACTGTGTGAGTGGAGTTGTTGATCGTCCTCAAC
TTCTTTCGGTTAGAATAGGAAAACTCGAAAAAAGACATGGGCATAGTGAA
GGTTTGGTACTTTGCTGTTTTGACTTTGTTGTCAACGCAATTGTTGAATT
GGAACGCCCTGCCTCTATGACTCTGGATCTCCTTTAGTATGCAAAGATAT
CTACGGAAATCGTCAACTATACGGAATAGCTATTGCAATACATGGACCGG
AAATTAACGAGCGACCTTGCACACCCGGCAAACAAATCTCAGTTTTCCTT
AGAGTACCACATTACGCTAAGTGGATTATTAAAACAATAAAAAATGCTCA
GGAAATAGATGAGAAATAGGTTGGGGAAAAACCAAACCTTTCTCAAGTAT
TCAAGAAATGAATGACACAAAACATGAACCATCATTATTTCTTCAAAAAA
TCGACGTTCCATTACTGAGCAGGAAGCATTGTATTTCTGAATTCGATAAA
GAAAATGGCACAACGATGTTGAGCAACAAGAATTTGTTTTGGAACAAAAT
GATGTGTGGTGGAAGCTCGAACCCGAATATAGGCTCGACCAAGCGATCTT
TACTGAAAGAATACACAAAATTTCAATATGAAGTGTCCAAAATCTACATC
CATTCTGCCTACAATGATGAACAGATACCATCAGATGATATTGCCCTGAT
CAAGCTGAAATACCCTATCGTCAGCAATCGATACAATTTTGTACGACCCA
TCGAGATTGCTTTGTGGCGATTCAAAGGTTCCGAGAGACACTCCATGCAT
TGCCAAGCTGCAGTTTGCCACACAGAAGATCACGTCGAATGGTGAATGGG
GAAGATGCGAAACTAGTGGACTGGTATTTCACAGTGTTGTTGGTGAAAGA
GGTAGACGACCATCCATTGTACTGTGGCGGTGTGCTCATAAAAAATGATT
GGATACTGACTGCTGCTCACTGTGTGAGTGGAGTTGTTGATCGTCCTCAA
CTTCTTTCGGTTAGAATAGGAAAACTCGAAAAAAGACATGGGCATAGTGA
AGGTTTGGTACTTTGCTGTTTTGACTTTGTTGTCAACGCAATTGTTGAAT
TGGAACGCCCTGCCTCTATGACTCTGGATCTCCTTTAGTATGCAAAGATA
TCTACGGAAATCGTCAACTATACGGAATAGCTATTGCAATACATGGACCG
GAAATTAACGAGCGACCTTGCACACCCGGCAAACAAATCTCAGTTTTCCT
TAGAGTACCACATTACGCTAAGTGGATTATTAAAACAATAAAAAATGCTC
AGGAAATAGATGAGAAATAGGTTGGGGAAAAACCAAACCTTTCTCAAGTA
TTCAAGAAATGAATGACACAAAACATGAACCATCATTATTTCTTCAAAAA
ATCGACGTTCCATTACTGAGCAGGAAGCATTGTATTTCTGAATTCGATAA
AGAAAATGGCACAACGATGTTGAGCAACAAGAATTTGTTTTGGAACAAAA
TGATGTGTGGTGGAAGCTCGAACCCGAATATAGGCTCGACCAAGCGATCT
TTACTGAAAGAATACACAAAATTTCAATATGAAGTGTCCAAAATCTACAT
CCATTCTGCCTACAATGATGAACAGATACCATCAGATGATATTGCCCTGA
TCAAGCTGAAATACCCTATCGTCAGCAATCGATACAATTTTGTACGACCC
ATCGAGATTGCTTTGTGGCGATTCAAAGGTTCCGAGAGACACTCCATGCA
TTGCCAAGCTGCAGTTTGCCACACAGAAGATCACGTCGAATGGTGAATGG
GGAAGATGCGAAACTAGTGGACTGGTATTTCACAGTGTTGTTGGTGAAAG
AGGTAGACGACCATCCATTGTACTGTGGCGGTGTGCTCATAAAAAATGAT
TGGATACTGACTGCTGCTCACTGTGTGAGTGGAGTTGTTGATCGTCCTCA
ACTTCTTTCGGTTAGAATAGGAAAACTCGAAAAAAGACATGGGCATAGTG
AAGGTTTGGTACTTTGCTGTTTTGACTTTGTTGTCAACGCAATTGTTGAA
TTGGAACGCCCTGCCTCTATGACTCTGGATCTCCTTTAGTATGCAAAGAT
ATCTACGGAAATCGTCAACTATACGGAATAGCTATTGCAATACATGGACC
GGAAATTAACGAGCGACCTTGCACACCCGGCAAACAAATCTCAGTTTTCC
TTAGAGTACCACATTACGCTAAGTGGATTATTAAAACAATAAAAAATGCT
CAGGAAATAGATGAGAAATAGGTTGGGGAAAAACCAAACCTTTCTCAAGT
ATTCAAGAAATGAATGACACAAAACATGAACCATCATTATTTCTTCAAAA
AATCGACGTTCCATTACTGAGCAGGAAGCATTGTATTTCTGAATTCGATA
AAGAAAATGGCACAACGATGTTGAGCAACAAGAATTTGTTTTGGAACAAA
ATGATGTGTGGTGGAAGCTCGAACCCGAATATAGGCTCGACCAAGCGATC
TTTACTGAAAGAATACACAAAATTTCAATATGAAGTGTCCAAAATCTACA
TCCATTCTGCCTACAATGATGAACAGATACCATCAGATGATATTGCCCTG
ATCAAGCTGAAATACCCTATCGTCAGCAATCGATACAATTTTGTACGACC
CATCGAGATTGCTTTGTGGCGATTCAAAGGTTCCGAGAGACACTCCATGC
ATTGCCAAGCTGCAGTTTGCCACACAGAAGATCACGTCGAATGGTGAATG
GGGAAGATGCGAAACTAGTGGACTGGTATTTCACAGTGTTGTTGGTGAAA
GAGGTAGACGACCATCCATTGTACTGTGGCGGTGTGCTCATAAAAAATGA
TTGGATACTGACTGCTGCTCACTGTGTGAGTGGAGTTGTTGATCGTCCTC
AACTTCTTTCGGTTAGAATAGGAAAACTCGAAAAAAGACATGGGCATAGT
GAAGGTTTGGTACTTTGCTGTTTTGACTTTGTTGTCAACGCAATTGTTGA
ATTGGAACGCCCTGCCTCTATGACTCTGGATCTCCTTTAGTATGCAAAGA
TATCTACGGAAATCGTCAACTATACGGAATAGCTATTGCAATACATGGAC
CGGAAATTAACGAGCGACCTTGCACACCCGGCAAACAAATCTCAGTTTTC
CTTAGAGTACCACATTACGCTAAGTGGATTATTAAAACAATAAAAAATGC
TCAGGAAATAGATGAGAAATAGGTTGGGGAAAAACCAAACCTTTCTCAAG
TATTCAAGAAATGAATGACACAAAACATGAACCATCATTATTTCTTCAAA
AAATCGACGTTCCATTACTGAGCAGGAAGCATTGTATTTCTGAATTCGAT
AAAGAAAATGGCACAACGATGTTGAGCAACAAGAATTTGTTTTGGAACAA
AATGATGTGTGGTGGAAGCTCGAACCCGAATATAGGCTCGACCAAGCGAT
CTTTACTGAAAGAATACACAAAATTTCAATATGAAGTGTCCAAAATCTAC
ATCCATTCTGCCTACAATGATGAACAGATACCATCAGATGATATTGCCCT
GATCAAGCTGAAATACCCTATCGTCAGCAATCGATACAATTTTGTACGAC
CCATCGAGATTGCTTTGTGGCGATTCAAAGGTTCCGAGAGACACTCCATG
CATTGCCAAGCTGCAGTTTGCCACACAGAAGATCACGTCGAATGGTGAAT
GGGGAAGATGCGAAACTAGTGGACTGGTATTTCACAGTGTTGTTGGTGAA
AGAGGTAGACGACCATCCATTGTACTGTGGCGGTGTGCTCATAAAAAATG
ATTGGATACTGACTGCTGCTCACTGTGTGAGTGGAGTTGTTGATCGTCCT
CAACTTCTTTCGGTTAGAATAGGAAAACTCGAAAAAAGACATGGGCATAG
TGAAGGTTTGGTACTTTGCTGTTTTGACTTTGTTGTCAACGCAATTGTTG
AATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034946XLOC_034946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055568-exon-scaffold_253-1575043694:1148820..1148903TCONS_00055568-exon-scaffold_253-1575043694:1148820..1148903Clytia hemisphaericaexon
TCONS_00055568-exon-scaffold_253-1575043694:1148431..1148636TCONS_00055568-exon-scaffold_253-1575043694:1148431..1148636Clytia hemisphaericaexon
TCONS_00055568-exon-scaffold_253-1575043694:1148025..1148255TCONS_00055568-exon-scaffold_253-1575043694:1148025..1148255Clytia hemisphaericaexon
TCONS_00055568-exon-scaffold_253-1575043694:1147125..1147337TCONS_00055568-exon-scaffold_253-1575043694:1147125..1147337Clytia hemisphaericaexon
TCONS_00055568-exon-scaffold_253-1575043694:1145558..1146468TCONS_00055568-exon-scaffold_253-1575043694:1145558..1146468Clytia hemisphaericaexon
TCONS_00055568-exon-scaffold_253-1510915933:1148820..1148903TCONS_00055568-exon-scaffold_253-1510915933:1148820..1148903Clytia hemisphaericaexon
TCONS_00055568-exon-scaffold_253-1510915933:1148431..1148636TCONS_00055568-exon-scaffold_253-1510915933:1148431..1148636Clytia hemisphaericaexon
TCONS_00055568-exon-scaffold_253-1510915933:1148025..1148255TCONS_00055568-exon-scaffold_253-1510915933:1148025..1148255Clytia hemisphaericaexon
TCONS_00055568-exon-scaffold_253-1510915933:1147125..1147337TCONS_00055568-exon-scaffold_253-1510915933:1147125..1147337Clytia hemisphaericaexon
TCONS_00055568-exon-scaffold_253-1510915933:1145558..1146468TCONS_00055568-exon-scaffold_253-1510915933:1145558..1146468Clytia hemisphaericaexon
TCONS_00055568-exon-scaffold_253-1491911889:1148820..1148903TCONS_00055568-exon-scaffold_253-1491911889:1148820..1148903Clytia hemisphaericaexon
TCONS_00055568-exon-scaffold_253-1491911889:1148431..1148636TCONS_00055568-exon-scaffold_253-1491911889:1148431..1148636Clytia hemisphaericaexon
TCONS_00055568-exon-scaffold_253-1491911889:1148025..1148255TCONS_00055568-exon-scaffold_253-1491911889:1148025..1148255Clytia hemisphaericaexon
TCONS_00055568-exon-scaffold_253-1491911889:1147125..1147337TCONS_00055568-exon-scaffold_253-1491911889:1147125..1147337Clytia hemisphaericaexon
TCONS_00055568-exon-scaffold_253-1491911889:1145558..1146468TCONS_00055568-exon-scaffold_253-1491911889:1145558..1146468Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055568-proteinTCONS_00055568-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1145558..1148903 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.48236	1.5419	0.895147	0.766291	1.5326	1.1321	0.952902	0.802886	0.437204	0.464184	0.475578	0.493621	0.295761	0.204767	0.406837	0.722645	0.686227	0.893457	0.630311	1.20922	0.16721	0.314585	0.42491	0.437813	0.212205	0.260409	1.65996	0.614621	0.383903	0.530829
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00055568 vs. Swiss-Prot (Human)
Match: NETR (Neurotrypsin OS=Homo sapiens GN=PRSS12 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.822e-20
Identity = 77/284 (27.11%), Postives = 130/284 (45.77%), Query Frame = 2 
Query:   92 HRRSRRMVNGEDAKLVDWYFTV--LLVKEVDDHPLYCGGVLIKNDWILTAAHCVSGVVDRPQLLSVRIGSTKRSLLKEYTKFQYEVSKIYIHSAYNDEQIPSD-DIALIKLKYP--IVSNRYNFVRPIEIALWRFKGSERHSMHCQAAGWGKTKPFSSIQEMNDTKHEPSLFLQKIDVPLLSRKHCISEFDKENGTTMLSNKNLFWNKMMCGGSSNPNIGT-PCLYDSGSPLVCKDIYGNRQLYGIAIAIHGPEINERPCTPGKQISVFLRVPHYAKWIIKTIK 925
            HRR +R++ G+++    W + V   L     D  L CG  L+ + W+LTAAHC     +  +  +VR+G    +L+ E  + +  V +I IH  Y  ++  SD DIAL++L+ P    +   + V P  + LWR +  ++ + +C   GWG            DT    S  LQ+  +PLL ++ C   +           K  F  +M+C G+ + +     C  DSG PL+C+    +  +YG+    +G  + + P        V+ +V  +  WI    K
Sbjct:  625 HRRQKRIIGGKNSLRGGWPWQVSLRLKSSHGDGRLLCGATLLSSCWVLTAAHCFKRYGNSTRSYAVRVGDY-HTLVPEEFEEEIGVQQIVIHREYRPDR--SDYDIALVRLQGPEEQCARFSSHVLPACLPLWRER-PQKTASNCYITGWG------------DTGRAYSRTLQQAAIPLLPKRFCEERY-----------KGRFTGRMLCAGNLHEHKRVDSCQGDSGGPLMCERPGESWVVYGVTSWGYGCGVKDSP-------GVYTKVSAFVPWIKSVTK 874
The following BLAST results are available for this feature:
BLAST of TCONS_00055568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NETR4.822e-2027.11Neurotrypsin OS=Homo sapiens GN=PRSS12 PE=2 SV=2[more]
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