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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055574 ID=TCONS_00055574|Name=TCONS_00055574|organism=Clytia hemisphaerica|type=transcript|length=2554bpRun BLAST on NCBI protein sequence of TCONS_00055574-protein >TCONS_00055574-protein ID=TCONS_00055574-protein|Name=TCONS_00055574-protein|organism=Clytia hemisphaerica|type=polypeptide|length=582bp MDCLSRSLFDEFSEGESPKKAKFKRPCTPPVINTTNKLPLPFITEDDGYNRun BLAST on NCBI transcript from alignment at scaffold_253:1170729..1178897- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055574 ID=TCONS_00055574|Name=TCONS_00055574|organism=Clytia hemisphaerica|type=transcript|length=8169bp|location=Sequence derived from alignment at scaffold_253:1170729..1178897- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:1170729..1178897- >TCONS_00055574 ID=TCONS_00055574|Name=TCONS_00055574|organism=Clytia hemisphaerica|type=CDS|length=26235bp|location=Sequence derived from alignment at scaffold_253:1170729..1178897- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055574 vs. Swiss-Prot (Human)
Match: WEE1 (Wee1-like protein kinase OS=Homo sapiens GN=WEE1 PE=1 SV=2) HSP 1 Score: 353.599 bits (906), Expect = 1.312e-109 Identity = 228/529 (43.10%), Postives = 315/529 (59.55%), Query Frame = 2
Query: 395 SPSPNRPSRLLQSPPSIHRGFLALKLFDTPHTPKTLLSKFKDAAXXXXXXXXXXXXXXXXXXXXXXXXXEKRLDFNSADFKHPASIIRGNIDKKVVYANINPFTPSPSVVKH-----KRTRQEFESESPLFDNXXXXXXXXXICGNPAKKLTLRETNI-SRFDAEFVDLGKIGTGEFGSVYKCLNRLDGCIYALKKSRKPLAGSIDEQMALREVWAHAVLGHHQHVVRYYSAWAENNHMLIQNEYCNGGNLSEVIIKNKFQKNXXXXXXXXXXXXXXXXXXXYIHHQQLAHMDIKPGNVFLCSQPKPRSEATLAEESSDDGYCGEENETNSGKKIDNYYPITYKIGDLGHVTSVVKPQVEEGDCRFLSNEVLHEDYTSLTKADIFALGLTTYLAAGGNDLPKNGPLWHHIRNTGLPHLPN-HSKVFNDLLNAMISKEPSDRPSASEVLSNPFL---GQMTKTQLRKELNEEKFKNEVLSRKLK---------------XXXXXXXXXXXPGKNKRLVGHKVTRSMSMSV 1906
SP P+ P +PP H+ F L+LFDTPHTPK+LLSK + + + +L +S S R ++ NINPFTP S++ H +R ++ + ++S ++ + + E E PAK++T+ E+N+ SR+ EF +L KIG+GEFGSV+KC+ RLDGCIYA+K+S+KPLAGS+DEQ ALREV+AHAVLG H HVVRY+SAWAE++HMLIQNEYCNGG+L++ I +N + K +LK LLLQ+ +GL+YIH L HMDIKP N+F+ S ++ +S++ G+E++ S K + +KIGDLGHVT + PQVEEGD RFL+NEVL E+YT L KADIFAL LT AAG LP+NG WH IR LP +P S+ F +LL MI +P RPSA ++ + L + + QLR ELN EKFKN +L ++LK A + + RL+G K+ RS+S+++
Sbjct: 165 SPRPDHPG----TPP--HKTFRKLRLFDTPHTPKSLLSKARGIDSSSV-----------------------KLRGSSLFMDTEKSGKREFDVRQTPQVNINPFTPD-SLLLHSSGQCRRRKRTYWNDS-CGEDMEASDYELEDETRPAKRITITESNMKSRYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFI-------SRTSIPNAASEE---GDEDDWASNK-------VMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQWHEIRQGRLPRIPQVLSQEFTELLKVMIHPDPERRPSAMALVKHSVLLSASRKSAEQLRIELNAEKFKNSLLQKELKKAQMAKAAAEERALFTDRMATRSTTQSNRTSRLIGKKMNRSVSLTI 645 The following BLAST results are available for this feature:
BLAST of TCONS_00055574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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