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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055575 ID=TCONS_00055575|Name=TCONS_00055575|organism=Clytia hemisphaerica|type=transcript|length=2718bpRun BLAST on NCBI protein sequence of TCONS_00055575-protein >TCONS_00055575-protein ID=TCONS_00055575-protein|Name=TCONS_00055575-protein|organism=Clytia hemisphaerica|type=polypeptide|length=749bp MEYRKIRENLIKSHNGTSGLRVWSVQDNGKDYYQMTPQNIGKIGSLFRGDRun BLAST on NCBI transcript from alignment at scaffold_253:1201611..1233400- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055575 ID=TCONS_00055575|Name=TCONS_00055575|organism=Clytia hemisphaerica|type=transcript|length=31790bp|location=Sequence derived from alignment at scaffold_253:1201611..1233400- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:1201611..1233400- >TCONS_00055575 ID=TCONS_00055575|Name=TCONS_00055575|organism=Clytia hemisphaerica|type=CDS|length=51750bp|location=Sequence derived from alignment at scaffold_253:1201611..1233400- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055575 vs. Swiss-Prot (Human)
Match: AVIL (Advillin OS=Homo sapiens GN=AVIL PE=1 SV=3) HSP 1 Score: 270.781 bits (691), Expect = 3.071e-77 Identity = 203/749 (27.10%), Postives = 348/749 (46.46%), Query Frame = 3
Query: 108 SGLRVWSVQDNGKDYYQMTPQNIGKIGSLFRGDCYILVKTLKPGNRLKSHVHFWIGSQAEKVEADDLLQGCYGIANE-----MGGT-IFYREFEGKESREFLDLFQCGVRYFDG-TAKTYRLAEKGNY-IKRLFQVKGQRNVHVFEVPLSYKSLNKGDSFVLEDQWTVYCWNGKHCNKAERIKAIEVARGIRDELCSGKAEIVIADEGSEVMNE---RRFFQALGDRGPIQSSEKGGDDEKFEEARQQNINIQKVVRQLHRFSENGELEKEDTTFVKLNRSHLDSNKSYLLNAGNAVLFVWKG-SKYHDENDDIFKTXXXXXXXXXXXXXXXVVFMHEDFESDYFKQFFDQWKESKHQHTHLLGMGKX--------------------XXXXXXXXXXXXXNSDGPVRIWLVDGYRKLCWPYSWYGYFFENECYIIDYLNEYT--QQHTIYIWQGKDSSEDDQKASLEMAQMRDKRMQYQATLVKLLQDLECDHFLQIMRGQMAVL------KNEEDADP---FYRIDGNNKHTVRTNQVSK-ETYLETGNSYLMKMPTLNYLWQGECTTIEGRILAERMADRIAPTGDLIIMREGHEIPAFWKAIGQNKGETDNKDEGXXXXXXXXXXXXXIRLFHCSDASGRMKIKEISPFDQKDLNRDDVMILDCDHKLFLWHGEGANQNEMQTAWETAKNFIEV--TGRKTNKTVIAQEKQGFETQEFKSFFRSWDPEMALESITYSTLKKQINN 2216
G+ VW ++ K + P + G+ + GDCY+++ T + + L +HFWIG + + E Q C I +GG+ + +RE + ES F F+ G+ Y G A + E Y +KRL VKG+RN+ EV +S+ S N+GD F+L+ + WNG N ER+KA+ +A+ IRD G+A+I + + E + + LG R I+ + DE ++ ++ I + H G+L + L + L+ + Y+L+ ++VWKG E +I+ ++V +++ ES FKQ F +W +G+GK + A +E ++ +G V +W ++ + Y WYG+F+ +CY++ Y E H +YIWQG+ +S+D+ AS A D++ A V++ E HF+ I +G++ + K + DP ++I GN+K + +V + L + + +L++ +YLW G+ ++ + R +A+ +A + G + EG E FW +G ++K + + RLF CS+ +G+ + EI+ F Q DLN DVM+LD ++FLW G AN E ++A TA+ ++ +GR + T I KQGFE F +F +WDP + TY LK+++ +
Sbjct: 14 PGIIVWRIE---KMELALVP--VSAHGNFYEGDCYVILSTRRVASLLSQDIHFWIGKDSSQDE-----QSCAAIYTTQLDDYLGGSPVQHREVQYHESDTFRGYFKQGIIYKQGGVASGMKHVETNTYDVKRLLHVKGKRNIRATEVEMSWDSFNRGDVFLLDLGKVIIQWNGPESNSGERLKAMLLAKDIRDRERGGRAKIGVIEGDKEAASPELMKVLQDTLGRRSIIKPTVP---DEIIDQKQKSTIML------YHISDSAGQLAVTEVATRPLVQDLLNHDDCYILDQSGTKIYVWKGKGATKAEKQAAMSKALGFIKMKSYPSSTNVETVNDGAESAMFKQLFQKWSVKDQT----MGLGKTFSIGKIAKVFQDKFDVTLLHTKPEVAAQERMVDDGNGKVEVWRIENLELVPVEYQWYGFFYGGDCYLVLYTYEVNGKPHHILYIWQGRHASQDELAASAYQAVEVDRQFDGAAVQVRVRMGTEPRHFMAIFKGKLVIFEGGTSRKGNAEPDPPVRLFQIHGNDKSNTKAVEVPAFASSLNSNDVFLLRTQAEHYLWYGKGSSGDERAMAKELASLLC-DGSENTVAEGQEPAEFWDLLGGKTPYANDK------RLQQEILDVQSRLFECSNKTGQFVVTEITDFTQDDLNPTDVMLLDTWDQVFLWIGAEANATEKESALATAQQYLHTHPSGRDPD-TPILIIKQGFEPPIFTGWFLAWDPNIWSAGKTYEQLKEELGD 731 HSP 2 Score: 85.5001 bits (210), Expect = 7.408e-17 Identity = 82/339 (24.19%), Postives = 142/339 (41.89%), Query Frame = 3
Query: 1215 NSDGPVRIWLVDGYRKLCWPYSWYGYFFENECYIIDYLNEYTQ--QHTIYIWQGKDSSEDDQKASLEMAQMRDKRMQYQATLVKLLQDLECDHFL------------QIMRGQMAVLKNEEDADPFYRIDGNNKHTVRTNQVSKE-TYLETGNSYLMKMPTLNYLWQGECTT----IEGRILAERMADRIAPTGDLIIMREGHE---IPAFWKAIGQNKGETDNKDEGXXXXXXXXXXXXXIRLFHCSDASGRMKIKEIS--PFDQKDLNRDDVMILD-CDHKLFLWHGEGANQNEMQTAWETAKNFIEVTGRKTNKTVIAQEKQGFETQEFKSFFRSW 2156
++D + +W ++ P S +G F+E +CY+I I+ W GKDSS+D+Q + D + + +Q E D F + G V N D + G K +R +V G+ +L+ + + W G + ++ +LA+ + DR I + EG + P K + G E + ++++TI L+H SD++G++ + E++ P Q LN DD ILD K+++W G+GA + E Q A A FI++ ++ T + G E+ FK F+ W
Sbjct: 11 DNDPGIIVWRIEKMELALVPVSAHGNFYEGDCYVILSTRRVASLLSQDIHFWIGKDSSQDEQSCAAIYTTQLDDYLGGSPVQHREVQYHESDTFRGYFKQGIIYKQGGVASGMKHVETNTYDVKRLLHVKG--KRNIRATEVEMSWDSFNRGDVFLLDLGKVIIQWNGPESNSGERLKAMLLAKDIRDRERGGRAKIGVIEGDKEAASPELMKVLQDTLGRRSIIKPTVPDEIIDQKQKSTIMLYHISDSAGQLAVTEVATRPLVQDLLNHDDCYILDQSGTKIYVWKGKGATKAEKQAAMSKALGFIKMKSYPSS-TNVETVNDGAESAMFKQLFQKW 346 The following BLAST results are available for this feature:
BLAST of TCONS_00055575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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