|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055581 ID=TCONS_00055581|Name=TCONS_00055581|organism=Clytia hemisphaerica|type=transcript|length=1318bp
GTAAGAATCTTCTTGctctttcgattttttttggtttcttcAAATATGTC
AAAGGATCTTTCACTATAAGTTTCAACTTTTCAGCGACTTTATTTGTCGT
TTGATTCGATAGATGAGCAAGAACATTAATCTGAGGTACGAAATAATACG
GCATGAATTTTCGCTCGAAATATTCTAGTAGGTTTCTCAAAAGTTGTTTC
AGGGCTTCGAGCATTGAGTCAGGATCATTGTTCCACGAGGATCCATGCTT
CTCTATGAACCAAAACATGGTACATTTACATATATAAGAAGATATGTTGT
CAGGATCTATTGGTTTTAAATCGCTATAAAGAAGCGATTTAAAAATGAGA
TATACCTTTCGCTGTTCTATGGACTGTAGTTTGATAAGTTTCCGCTCGAT
ATGAGCGAAAGAGTAGCGGAACTCGGTCGAATTTAGATCGTTTCTATCTT
TGTTGGAAGGTTTGGCTATGATGTAACCAACATTGAGCTCTTGTACCAAT
GAGTGTACCGGGATTGATGTGTTTCGCCACCGTTTAAGTAATTGCCCATA
ACTTTTCAGGGGCCAGTTCAATTTCAACACGAAGGCAAAATCAGAGGAGG
TTTTCAATTGGAGCTTGTTTCTTATATGTATATCAAAACCAAACGTTGTA
GTCGCTTTGGTGAACTTCGATGTAAACGGAGGGCTCGAAATATGTTTTAT
TGGTGTTTTAGTTATATACGAAGCTGCgattttggcgaatttgatTAGAT
TATGATCCATTTTGCCATCAAACATGTCCAAATTATATTCCTCTTTGATT
CGATTTGAAAGAAGATAGCCTTCgaaattgatgtaatcttgtAGTTTAGT
TGGTGTGGTCTTTGACTCGAAGAAATTTATGATTTCATTGGATACTTTAA
AATTGTCATCCTCCATTATATTGACTCTCAAAAATCCTGGTTTTCCTTCT
ATCTGTCTTTCAAGAGATTTAAATTCTTTGCTAAGCTCAAACATAGTCAT
TTCCAAATCAAGTTCTAATTCACGATGaagaaaatcggggaaatcgggAT
CAGCTTGAAACAATCTTGCTGCGAAAGAGCCTTCACTGATGCTCCCAGCA
AGCTTCATATCTTTGAAGACAAGGTTCAAACCGAAGTGAGTAAAATTATC
TTTGATCACTTCAAATAAATATTGGGTGATATCTATTATTGCTGTCTCCA
TACGATGTAAGTCATCAAATGCTGTCAACACACAATCTAAAAGAATAGAA
TCAAGCttatccactgacctttatataccctggaccaaactatatccgcc
atctttgatcggagcttG Run BLAST on NCBI protein sequence of TCONS_00055581-protein >TCONS_00055581-protein ID=TCONS_00055581-protein|Name=TCONS_00055581-protein|organism=Clytia hemisphaerica|type=polypeptide|length=400bp
METAIIDITQYLFEVIKDNFTHFGLNLVFKDMKLAGSISEGSFAARLFQA
DPDFPDFLHRELELDLEMTMFELSKEFKSLERQIEGKPGFLRVNIMEDDN
FKVSNEIINFFESKTTPTKLQDYINFEGYLLSNRIKEEYNLDMFDGKMDH
NLIKFAKIAASYITKTPIKHISSPPFTSKFTKATTTFGFDIHIRNKLQLK
TSSDFAFVLKLNWPLKSYGQLLKRWRNTSIPVHSLVQELNVGYIIAKPSN
KDRNDLNSTEFRYSFAHIERKLIKLQSIEQRKVYLIFKSLLYSDLKPIDP
DNISSYICKCTMFWFIEKHGSSWNNDPDSMLEALKQLLRNLLEYFERKFM
PYYFVPQINVLAHLSNQTTNKVAEKLKLIVKDPLTYLKKPKKIERARRFL Run BLAST on NCBI transcript from alignment at scaffold_253:10969..12286 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055581 ID=TCONS_00055581|Name=TCONS_00055581|organism=Clytia hemisphaerica|type=transcript|length=1318bp|location=Sequence derived from alignment at scaffold_253:10969..12286 (Clytia hemisphaerica)
Caagctccgatcaaagatggcggatatagtttggtccagggtatataaag
gtcagtggataaGCTTGATTCTATTCTTTTAGATTGTGTGTTGACAGCAT
TTGATGACTTACATCGTATGGAGACAGCAATAATAGATATCACCCAATAT
TTATTTGAAGTGATCAAAGATAATTTTACTCACTTCGGTTTGAACCTTGT
CTTCAAAGATATGAAGCTTGCTGGGAGCATCAGTGAAGGCTCTTTCGCAG
CAAGATTGTTTCAAGCTGATcccgatttccccgattttcttCATCGTGAA
TTAGAACTTGATTTGGAAATGACTATGTTTGAGCTTAGCAAAGAATTTAA
ATCTCTTGAAAGACAGATAGAAGGAAAACCAGGATTTTTGAGAGTCAATA
TAATGGAGGATGACAATTTTAAAGTATCCAATGAAATCATAAATTTCTTC
GAGTCAAAGACCACACCAACTAAACTacaagattacatcaatttcGAAGG
CTATCTTCTTTCAAATCGAATCAAAGAGGAATATAATTTGGACATGTTTG
ATGGCAAAATGGATCATAATCTAatcaaattcgccaaaatcGCAGCTTCG
TATATAACTAAAACACCAATAAAACATATTTCGAGCCCTCCGTTTACATC
GAAGTTCACCAAAGCGACTACAACGTTTGGTTTTGATATACATATAAGAA
ACAAGCTCCAATTGAAAACCTCCTCTGATTTTGCCTTCGTGTTGAAATTG
AACTGGCCCCTGAAAAGTTATGGGCAATTACTTAAACGGTGGCGAAACAC
ATCAATCCCGGTACACTCATTGGTACAAGAGCTCAATGTTGGTTACATCA
TAGCCAAACCTTCCAACAAAGATAGAAACGATCTAAATTCGACCGAGTTC
CGCTACTCTTTCGCTCATATCGAGCGGAAACTTATCAAACTACAGTCCAT
AGAACAGCGAAAGGTATATCTCATTTTTAAATCGCTTCTTTATAGCGATT
TAAAACCAATAGATCCTGACAACATATCTTCTTATATATGTAAATGTACC
ATGTTTTGGTTCATAGAGAAGCATGGATCCTCGTGGAACAATGATCCTGA
CTCAATGCTCGAAGCCCTGAAACAACTTTTGAGAAACCTACTAGAATATT
TCGAGCGAAAATTCATGCCGTATTATTTCGTACCTCAGATTAATGTTCTT
GCTCATCTATCGAATCAAACGACAAATAAAGTCGCTGAAAAGTTGAAACT
TATAGTGAAAGATCCTTTGACATATTTgaagaaaccaaaaaaaatcgaaa
gagCAAGAAGATTCTTAC Coding sequence (CDS) from alignment at scaffold_253:10969..12286 >TCONS_00055581 ID=TCONS_00055581|Name=TCONS_00055581|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_253:10969..12286 (Clytia hemisphaerica)
ATGGAGACAGCAATAATAGATATCACCCAATATTTATTTGAAGTGATCAA
AGATAATTTTACTCACTTCGGTTTGAACCTTGTCTTCAAAGATATGAAGC
TTGCTGGGAGCATCAGTGAAGGCTCTTTCGCAGCAAGATTGTTTCAAGCT
GATcccgatttccccgattttcttCATCGTGAATTAGAACTTGATTTGGA
AATGACTATGTTTGAGCTTAGCAAAGAATTTAAATCTCTTGAAAGACAGA
TAGAAGGAAAACCAGGATTTTTGAGAGTCAATATAATGGAGGATGACAAT
TTTAAAGTATCCAATGAAATCATAAATTTCTTCGAGTCAAAGACCACACC
AACTAAACTacaagattacatcaatttcGAAGGCTATCTTCTTTCAAATC
GAATCAAAGAGGAATATAATTTGGACATGTTTGATGGCAAAATGGATCAT
AATCTAatcaaattcgccaaaatcGCAGCTTCGTATATAACTAAAACACC
AATAAAACATATTTCGAGCCCTCCGTTTACATCGAAGTTCACCAAAGCGA
CTACAACGTTTGGTTTTGATATACATATAAGAAACAAGCTCCAATTGAAA
ACCTCCTCTGATTTTGCCTTCGTGTTGAAATTGAACTGGCCCCTGAAAAG
TTATGGGCAATTACTTAAACGGTGGCGAAACACATCAATCCCGGTACACT
CATTGGTACAAGAGCTCAATGTTGGTTACATCATAGCCAAACCTTCCAAC
AAAGATAGAAACGATCTAAATTCGACCGAGTTCCGCTACTCTTTCGCTCA
TATCGAGCGGAAACTTATCAAACTACAGTCCATAGAACAGCGAAAGGTAT
ATCTCATTTTTAAATCGCTTCTTTATAGCGATTTAAAACCAATAGATCCT
GACAACATATCTTCTTATATATGTAAATGTACCATGTTTTGGTTCATAGA
GAAGCATGGATCCTCGTGGAACAATGATCCTGACTCAATGCTCGAAGCCC
TGAAACAACTTTTGAGAAACCTACTAGAATATTTCGAGCGAAAATTCATG
CCGTATTATTTCGTACCTCAGATTAATGTTCTTGCTCATCTATCGAATCA
AACGACAAATAAAGTCGCTGAAAAGTTGAAACTTATAGTGAAAGATCCTT
TGACATATTTgaagaaaccaaaaaaaatcgaaagagCAAGAAGATTCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055581-exon-scaffold_253-1491911889:10969..12286 | TCONS_00055581-exon-scaffold_253-1491911889:10969..12286 | Clytia hemisphaerica | exon |
| TCONS_00055581-exon-scaffold_253-1510915933:10969..12286 | TCONS_00055581-exon-scaffold_253-1510915933:10969..12286 | Clytia hemisphaerica | exon |
| TCONS_00055581-exon-scaffold_253-1575043694:10969..12286 | TCONS_00055581-exon-scaffold_253-1575043694:10969..12286 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:10969..12286 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
|
