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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055583 ID=TCONS_00055583|Name=TCONS_00055583|organism=Clytia hemisphaerica|type=transcript|length=1075bp
actttttgtggcgcacctggtatatatataatatatctCCAGGACCTTTT
TATAGAACCTTTAAAAGTGAAGCAAGATACTTTTagaaatatttccaaaa
atatattctCATTTACAACAAGTATGTATATGTAGGTCGCCATTGTTATT
CCCATTTGCGAATTTACCACAACTAACATGACATCCAATGCGTGAATCTC
CAAATGTGGTCACTTTTATGTAACTAGGAGTATGTGAATACGTTTTTATA
GCGTTCATATACCCATGGTGAGCTTTGAATCCTGGAGGACAGGGCCCGCT
CTTGAAAATACAATAGCTTCTGGTGGCCAAGTGGATGGTTTGTTAACGTC
AGCAGAAAGTTGGGATATTTGTTGGCTTTGCTGTGAAATTTCGTCTTGGA
CGGATTGAGTTTGGGTTTCATTTAATCCAAGTTGAATTGTCAAAGTAGAC
AAATTTTGTTTCGTTTCAGTTAGGTTTTTTGTAAGGTTGTACACTTGCAA
ATTAAGGTTTTGGTATTCCCTTGACATGGTCGCTAATTTTTGTTCCAACA
AGTCTTTGTTTTCAGAAATCTCTGAACTCTGCTGATCAATGATGCTTTTC
TGATTTGCAATTTTCTTAGTCAATCTTTCAATTCTTGATTGATTGTCCCT
TATGTAAGTGATGGATAAAGCACTTACAAGActcaataaaatgaaaatga
ataatTTAGTAGAGGTACTGGATCTCTTTGGCTCAACATTCTGTAGTGGA
GGCTGTTGTTGAATGTTAGCTAATTGGTTCTGCATCACTCGTATCTTTCC
TGCTAGATCTTTTAAAACATTCTGATTGGCTAATGCAAGCTCGTCTTTAA
TCTGATGATTTGGAAGGTTCGGTCGAGAACCTGCTGCATTGTCCAGATTG
CCACGTAACTGATCGTTTTTCAGTATTGCTTGATTATTGCCAGCTATATG
ACAACCTCTTCTTTGATTCTGTAAGTCAATAGCCAACTCTTGTGCCACCT
CCATTGCCGTCAATTTTCGCACTATCTTtcaaactaaagtctgtctcaaa
ataatttgtagcaagagaaaaaaat Run BLAST on NCBI protein sequence of TCONS_00055583-protein >TCONS_00055583-protein ID=TCONS_00055583-protein|Name=TCONS_00055583-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MEVAQELAIDLQNQRRGCHIAGNNQAILKNDQLRGNLDNAAGSRPNLPNH
QIKDELALANQNVLKDLAGKIRVMQNQLANIQQQPPLQNVEPKRSSTSTK
LFIFILLSLVSALSITYIRDNQSRIERLTKKIANQKSIIDQQSSEISENK
DLLEQKLATMSREYQNLNLQVYNLTKNLTETKQNLSTLTIQLGLNETQTQ
SVQDEISQQSQQISQLSADVNKPSTWPPEAIVFSRAGPVLQDSKLTMGI Run BLAST on NCBI transcript from alignment at scaffold_253:61232..62306 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055583 ID=TCONS_00055583|Name=TCONS_00055583|organism=Clytia hemisphaerica|type=transcript|length=1075bp|location=Sequence derived from alignment at scaffold_253:61232..62306 (Clytia hemisphaerica)
atttttttctcttgctacaaattattttgagacagactttagtttgaAAG
ATAGTGCGAAAATTGACGGCAATGGAGGTGGCACAAGAGTTGGCTATTGA
CTTACAGAATCAAAGAAGAGGTTGTCATATAGCTGGCAATAATCAAGCAA
TACTGAAAAACGATCAGTTACGTGGCAATCTGGACAATGCAGCAGGTTCT
CGACCGAACCTTCCAAATCATCAGATTAAAGACGAGCTTGCATTAGCCAA
TCAGAATGTTTTAAAAGATCTAGCAGGAAAGATACGAGTGATGCAGAACC
AATTAGCTAACATTCAACAACAGCCTCCACTACAGAATGTTGAGCCAAAG
AGATCCAGTACCTCTACTAAattattcattttcattttattgagTCTTGT
AAGTGCTTTATCCATCACTTACATAAGGGACAATCAATCAAGAATTGAAA
GATTGACTAAGAAAATTGCAAATCAGAAAAGCATCATTGATCAGCAGAGT
TCAGAGATTTCTGAAAACAAAGACTTGTTGGAACAAAAATTAGCGACCAT
GTCAAGGGAATACCAAAACCTTAATTTGCAAGTGTACAACCTTACAAAAA
ACCTAACTGAAACGAAACAAAATTTGTCTACTTTGACAATTCAACTTGGA
TTAAATGAAACCCAAACTCAATCCGTCCAAGACGAAATTTCACAGCAAAG
CCAACAAATATCCCAACTTTCTGCTGACGTTAACAAACCATCCACTTGGC
CACCAGAAGCTATTGTATTTTCAAGAGCGGGCCCTGTCCTCCAGGATTCA
AAGCTCACCATGGGTATATGAACGCTATAAAAACGTATTCACATACTCCT
AGTTACATAAAAGTGACCACATTTGGAGATTCACGCATTGGATGTCATGT
TAGTTGTGGTAAATTCGCAAATGGGAATAACAATGGCGACCTACATATAC
ATACTTGTTGTAAATGagaatatatttttggaaatatttctAAAAGTATC
TTGCTTCACTTTTAAAGGTTCTATAAAAAGGTCCTGGagatatattatat
atataccaggtgcgccacaaaaagt Coding sequence (CDS) from alignment at scaffold_253:61232..62306 >TCONS_00055583 ID=TCONS_00055583|Name=TCONS_00055583|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_253:61232..62306 (Clytia hemisphaerica)
ATGGAGGTGGCACAAGAGTTGGCTATTGACTTACAGAATCAAAGAAGAGG
TTGTCATATAGCTGGCAATAATCAAGCAATACTGAAAAACGATCAGTTAC
GTGGCAATCTGGACAATGCAGCAGGTTCTCGACCGAACCTTCCAAATCAT
CAGATTAAAGACGAGCTTGCATTAGCCAATCAGAATGTTTTAAAAGATCT
AGCAGGAAAGATACGAGTGATGCAGAACCAATTAGCTAACATTCAACAAC
AGCCTCCACTACAGAATGTTGAGCCAAAGAGATCCAGTACCTCTACTAAa
ttattcattttcattttattgagTCTTGTAAGTGCTTTATCCATCACTTA
CATAAGGGACAATCAATCAAGAATTGAAAGATTGACTAAGAAAATTGCAA
ATCAGAAAAGCATCATTGATCAGCAGAGTTCAGAGATTTCTGAAAACAAA
GACTTGTTGGAACAAAAATTAGCGACCATGTCAAGGGAATACCAAAACCT
TAATTTGCAAGTGTACAACCTTACAAAAAACCTAACTGAAACGAAACAAA
ATTTGTCTACTTTGACAATTCAACTTGGATTAAATGAAACCCAAACTCAA
TCCGTCCAAGACGAAATTTCACAGCAAAGCCAACAAATATCCCAACTTTC
TGCTGACGTTAACAAACCATCCACTTGGCCACCAGAAGCTATTGTATTTT
CAAGAGCGGGCCCTGTCCTCCAGGATTCAAAGCTCACCATGGGTATATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055583-exon-scaffold_253-1491911889:61232..62306 | TCONS_00055583-exon-scaffold_253-1491911889:61232..62306 | Clytia hemisphaerica | exon |
| TCONS_00055583-exon-scaffold_253-1510915933:61232..62306 | TCONS_00055583-exon-scaffold_253-1510915933:61232..62306 | Clytia hemisphaerica | exon |
| TCONS_00055583-exon-scaffold_253-1575043694:61232..62306 | TCONS_00055583-exon-scaffold_253-1575043694:61232..62306 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:61232..62306 . |
Blast
The following BLAST results are available for this feature:
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