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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055600 ID=TCONS_00055600|Name=TCONS_00055600|organism=Clytia hemisphaerica|type=transcript|length=1839bp
CATGATTTGGCAACTTATAGTTTTCTGTTTtactttgtttcattttgatt
ttgcagACAGTTTTATGTGATAATAGCAAATGTTATTGATCTCTTGTTGT
TTATGTATTTTTGCGCTTTTATCTTTGCTGAAGGTTAGGACTAGGGCCAA
CCACTATGCAATGACTTTTTATTGCTCAAATATTTGTTGTCAACTTTATG
GCTTAGTTGTTGTCCTCTTCCTGCTCTAAATACGATATCCTTGTTAAGAA
ACGTCAATGTTTTGACTGTTATTTATTCAATAAACTTTATAGTCGTCTAA
TCATTTAATTACACTTCATTTCCGAGGACGCCGATATAACTTGATTCAAA
GTTTTAGTGTTTTATATGTGTACAGTTTGTAGATCTCGATATTTGTTTCG
TGATGAGAGAGTTTTTATGAATgaatattcttcaaaaaattgtaAAGCTG
TTGGTTTTCCTTACTCgttcgaaaaaaattgaattagacCTGGGATACAC
TGTGTACAGTTTTTCACCTAAGAAAAAGAGTCCATTCTTGAACGAATGGT
GGGATGTTTTATAAAGGCTTTCTCCATCTTTTCTTTTCGCTTTTTTCGCC
TGCCGTTTATTTTCATAattctttgagaaaaatttccGTGACTCTGTTTT
ATCTCTATGTTTACTACGTACTTTTTTTGTTACTAACTATAGAAGTACTA
ATGAAACTTTGAAGAGCTAAAAGGTTGTGttatttttccctatttttgac
caaaaattttctaaactaGGTTTGTGGGGCATAACAGCGAAATTATCTTG
GTAGGTGTGCTGTATAGAAAAAAGGATATGTGTATGTTATAAAGGATGAA
CATATCTCCTATCCTTTATCATtttgttcaacatttttttgtcaaattta
ctcTACGCATATGTTGCTATGAAGGTTTGTTATCATATTAAAACGCCTTA
ATACTGATAGTAATTAAAATTATGCTTGCAATAAGTAGTAGGCACATTTG
TTGTTTCTTTGAACTCGCTTTATTGATAAAATGGAATTCCTCAGTATTCA
GATAAAATAGAGGTTATGAAAATATGTTATATACCATTAATAAATTTATT
AAACATTTGAAGCTCAGATCCTCGAAAGTCAAATACTTTGTTTAGCCTTG
ATACCTCAATTTTCAATGGATCGTGTTAAATATTTGATttcttgtgaaaa
aaattcttttcaccCTTTCATTTCTTTCTTCAATGTTATTAAAAGATAGA
AGAGAGcgacttttttcctttttccgcAGAACCAGAACATTAAGCTTGCG
ATTCTTTCGGTCAATGAAAATTTCCATCTATCGAGGATAATATTTACATA
TTTGGCAAATATATTGGGAGGAACCATGCTATTTTACCGTTTGGATCTAT
CCAAATCAGGTTtcagacagaccctggaaaacctggaaaacctggaaata
tgataagttttcagaaaaatcagggaaacccagggaaaaatttttttttc
ccagtctgctcagggaaactcaggggattttattttttgaagaatgaatg
gaaaaaacagatttaaaagtttttttagttttaaagtgtTTATTCATATG
CAGTATTTGTAGCTTTAAATTTTACCTTAGGTTTACCATTTGATTTGTGT
GCCTTTTGTTTAAAGATACATCTCTTTTGACTCTGcttagtttttatggt
ttgctTGATACTCAGGGAAAAAATNNNNNNNNNAAATAGCTAAAATGAGG
AATTTCTCagggaaaaaacctttgaaaattgattaaaattcagggaaact
cagggaattttattttcgaaggtctgtctgaaccctgcA Run BLAST on NCBI transcript from alignment at scaffold_253:301963..303801 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055600 ID=TCONS_00055600|Name=TCONS_00055600|organism=Clytia hemisphaerica|type=transcript|length=1839bp|location=Sequence derived from alignment at scaffold_253:301963..303801 (Clytia hemisphaerica)
Tgcagggttcagacagaccttcgaaaataaaattccctgagtttccctga
attttaatcaattttcaaaggttttttccctGAGAAATTCCTCATTTTAG
CTATTTNNNNNNNNNATTTTTTCCCTGAGTATCAagcaaaccataaaaac
taagCAGAGTCAAAAGAGATGTATCTTTAAACAAAAGGCACACAAATCAA
ATGGTAAACCTAAGGTAAAATTTAAAGCTACAAATACTGCATATGAATAA
acactttaaaactaaaaaaacttttaaatctgttttttccattcattctt
caaaaaataaaatcccctgagtttccctgagcagactgggaaaaaaaaat
ttttccctgggtttccctgatttttctgaaaacttatcatatttccaggt
tttccaggttttccagggtctgtctgaAACCTGATTTGGATAGATCCAAA
CGGTAAAATAGCATGGTTCCTCCCAATATATTTGCCAAATATGTAAATAT
TATCCTCGATAGATGGAAATTTTCATTGACCGAAAGAATCGCAAGCTTAA
TGTTCTGGTTCTgcggaaaaaggaaaaaagtcgCTCTCTTCTATCTTTTA
ATAACATTGAAGAAAGAAATGAAAGggtgaaaagaatttttttcacaaga
aATCAAATATTTAACACGATCCATTGAAAATTGAGGTATCAAGGCTAAAC
AAAGTATTTGACTTTCGAGGATCTGAGCTTCAAATGTTTAATAAATTTAT
TAATGGTATATAACATATTTTCATAACCTCTATTTTATCTGAATACTGAG
GAATTCCATTTTATCAATAAAGCGAGTTCAAAGAAACAACAAATGTGCCT
ACTACTTATTGCAAGCATAATTTTAATTACTATCAGTATTAAGGCGTTTT
AATATGATAACAAACCTTCATAGCAACATATGCGTAgagtaaatttgaca
aaaaaatgttgaacaaaATGATAAAGGATAGGAGATATGTTCATCCTTTA
TAACATACACATATCCTTTTTTCTATACAGCACACCTACCAAGATAATTT
CGCTGTTATGCCCCACAAACCtagtttagaaaatttttggtcaaaaatag
ggaaaaataaCACAACCTTTTAGCTCTTCAAAGTTTCATTAGTACTTCTA
TAGTTAGTAACAAAAAAAGTACGTAGTAAACATAGAGATAAAACAGAGTC
ACggaaatttttctcaaagaatTATGAAAATAAACGGCAGGCGAAAAAAG
CGAAAAGAAAAGATGGAGAAAGCCTTTATAAAACATCCCACCATTCGTTC
AAGAATGGACTCTTTTTCTTAGGTGAAAAACTGTACACAGTGTATCCCAG
gtctaattcaatttttttcgaacGAGTAAGGAAAACCAACAGCTTtacaa
ttttttgaagaatattcATTCATAAAAACTCTCTCATCACGAAACAAATA
TCGAGATCTACAAACTGTACACATATAAAACACTAAAACTTTGAATCAAG
TTATATCGGCGTCCTCGGAAATGAAGTGTAATTAAATGATTAGACGACTA
TAAAGTTTATTGAATAAATAACAGTCAAAACATTGACGTTTCTTAACAAG
GATATCGTATTTAGAGCAGGAAGAGGACAACAACTAAGCCATAAAGTTGA
CAACAAATATTTGAGCAATAAAAAGTCATTGCATAGTGGTTGGCCCTAGT
CCTAACCTTCAGCAAAGATAAAAGCGCAAAAATACATAAACAACAAGAGA
TCAATAACATTTGCTATTATCACATAAAACTGTctgcaaaatcaaaatga
aacaaagtaAAACAGAAAACTATAAGTTGCCAAATCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055600-exon-scaffold_253-1491911889:301963..303801 | TCONS_00055600-exon-scaffold_253-1491911889:301963..303801 | Clytia hemisphaerica | exon |
| TCONS_00055600-exon-scaffold_253-1510915933:301963..303801 | TCONS_00055600-exon-scaffold_253-1510915933:301963..303801 | Clytia hemisphaerica | exon |
| TCONS_00055600-exon-scaffold_253-1575043694:301963..303801 | TCONS_00055600-exon-scaffold_253-1575043694:301963..303801 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:301963..303801 . |
Blast
The following BLAST results are available for this feature:
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