TCONS_00055602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055602
Unique NameTCONS_00055602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1116

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055602 ID=TCONS_00055602|Name=TCONS_00055602|organism=Clytia hemisphaerica|type=transcript|length=1116bp
TTGCAACCTTTCCTGGCTCAACATATGGGCCATTACACTATAGATGTCTT
GAAAGCTATAAAACTGTTTGTCTTCGAGAAAACAAAGGCAATTTTGATGC
TAAAATTAGGCTCACTCCTGAATGTAAAATAGAATGCTCCTGGTGGAGAG
ATAAGGTCATGGACATGAAGAAATCTATTGATCTACCCCCTTTTGATCAT
GAAATATATACTGATGCTTCAAAAACAGGGTGGGGTGCTGTATTTTCCAA
TAAAAAGTTATCTGGTCATTGGGATTTTGTTGAAGATGTACACATTAATG
TGTTAGAAATGCAGGCAATACTCAATACAATCACTAAGTTtacaaaatac
ataaaaaattcaCACATTAAAGTGTACTGTGATAATGTTACTGCTGTTTC
AACTATCAATAAAATGGGAACCAGTCACAGCACTAATTGTAATAAATTAG
GACAACTTATTTGGGAATACTGTATTGAAAATTGTATATGGATTACCAGT
ACATTCATTCCTGGAAAGGAGAATATTGAAGCTGATGCCCTGTCTAGAAA
GTTGTATAAAAATGCTGAAGCAATGCTTAATAGGGAGCTTTTCAATGAAG
GCATTAAACAGTTAAATTTCATGCCTGACTTGGACTGTTTTGCAAGCCCC
TCAAATGCCCAAATTGATAGATTTGTATGTAGATTCCCAAAGAAGAACTC
CTTTGCCACCGATGCTTTTACTGTCGACTGGTCAAAATATAAGTGTTATT
TATTTCCACCTTTTAGCCTAATCGGAAGAGTGCTACAAAAGATCAGAAGG
GACAAGCCAAGAAGAGTCTTAATGGTTGTTCCTCGTTGGCCAACTCAAGC
TTGGTATCCTATGCTAGAACGTCTTATGATTCAACCGCCGTTCAACATAA
AGCCCCAAAAAGCCAATATGTTTGTGGGAAAAGGTGTTCATCCGATGGCT
CACAAAATTCCTTTGATGATGTGTCTATTGTCAGGGCTGCATACATAGGT
ATGAAGATTTCACCCGAAGTGGTGGATGTAATCATGACAAGTTGGAGGAA
AAACACATTGGCCAAATATAAACCCATTCTTAGAAAGTGGTATACGTTTT
GCTTAGAAAATAAAGT
Run BLAST on NCBI

protein sequence of TCONS_00055602-protein

>TCONS_00055602-protein ID=TCONS_00055602-protein|Name=TCONS_00055602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
ATFPGSTYGPLHYRCLESYKTVCLRENKGNFDAKIRLTPECKIECSWWRD
KVMDMKKSIDLPPFDHEIYTDASKTGWGAVFSNKKLSGHWDFVEDVHINV
LEMQAILNTITKFTKYIKNSHIKVYCDNVTAVSTINKMGTSHSTNCNKLG
QLIWEYCIENCIWITSTFIPGKENIEADALSRKLYKNAEAMLNRELFNEG
IKQLNFMPDLDCFASPSNAQIDRFVCRFPKKNSFATDAFTVDWSKYKCYL
FPPFSLIGRVLQKIRRDKPRRVLMVVPRWPTQAWYPMLERLMIQPPFNIK
PQKANMFVGKGVHPMAHKIPLMMCLLSGLHT
Run BLAST on NCBI

transcript from alignment at scaffold_253:347798..348913

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055602 ID=TCONS_00055602|Name=TCONS_00055602|organism=Clytia hemisphaerica|type=transcript|length=1116bp|location=Sequence derived from alignment at scaffold_253:347798..348913 (Clytia hemisphaerica)
ACTTTATTTTCTAAGCAAAACGTATACCACTTTCTAAGAATGGGTTTATA TTTGGCCAATGTGTTTTTCCTCCAACTTGTCATGATTACATCCACCACTT CGGGTGAAATCTTCATACCTATGTATGCAGCCCTGACAATAGACACATCA TCAAAGGAATTTTGTGAGCCATCGGATGAACACCTTTTCCCACAAACATA TTGGCTTTTTGGGGCTTTATGTTGAACGGCGGTTGAATCATAAGACGTTC TAGCATAGGATACCAAGCTTGAGTTGGCCAACGAGGAACAACCATTAAGA CTCTTCTTGGCTTGTCCCTTCTGATCTTTTGTAGCACTCTTCCGATTAGG CTAAAAGGTGGAAATAAATAACACTTATATTTTGACCAGTCGACAGTAAA AGCATCGGTGGCAAAGGAGTTCTTCTTTGGGAATCTACATACAAATCTAT CAATTTGGGCATTTGAGGGGCTTGCAAAACAGTCCAAGTCAGGCATGAAA TTTAACTGTTTAATGCCTTCATTGAAAAGCTCCCTATTAAGCATTGCTTC AGCATTTTTATACAACTTTCTAGACAGGGCATCAGCTTCAATATTCTCCT TTCCAGGAATGAATGTACTGGTAATCCATATACAATTTTCAATACAGTAT TCCCAAATAAGTTGTCCTAATTTATTACAATTAGTGCTGTGACTGGTTCC CATTTTATTGATAGTTGAAACAGCAGTAACATTATCACAGTACACTTTAA TGTGtgaattttttatgtattttgtaAACTTAGTGATTGTATTGAGTATT GCCTGCATTTCTAACACATTAATGTGTACATCTTCAACAAAATCCCAATG ACCAGATAACTTTTTATTGGAAAATACAGCACCCCACCCTGTTTTTGAAG CATCAGTATATATTTCATGATCAAAAGGGGGTAGATCAATAGATTTCTTC ATGTCCATGACCTTATCTCTCCACCAGGAGCATTCTATTTTACATTCAGG AGTGAGCCTAATTTTAGCATCAAAATTGCCTTTGTTTTCTCGAAGACAAA CAGTTTTATAGCTTTCAAGACATCTATAGTGTAATGGCCCATATGTTGAG CCAGGAAAGGTTGCAA

Coding sequence (CDS) from alignment at scaffold_253:347798..348913

>TCONS_00055602 ID=TCONS_00055602|Name=TCONS_00055602|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_253:347798..348913 (Clytia hemisphaerica)
CTATGTATGCAGCCCTGACAATAGACACATCATCAAAGGAATTTTGTGAG
CCATCGGATGAACACCTTTTCCCACAAACATATTGGCTTTTTGGGGCTTT
ATGTTGAACGGCGGTTGAATCATAAGACGTTCTAGCATAGGATACCAAGC
TTGAGTTGGCCAACGAGGAACAACCATTAAGACTCTTCTTGGCTTGTCCC
TTCTGATCTTTTGTAGCACTCTTCCGATTAGGCTAAAAGGTGGAAATAAA
TAACACTTATATTTTGACCAGTCGACAGTAAAAGCATCGGTGGCAAAGGA
GTTCTTCTTTGGGAATCTACATACAAATCTATCAATTTGGGCATTTGAGG
GGCTTGCAAAACAGTCCAAGTCAGGCATGAAATTTAACTGTTTAATGCCT
TCATTGAAAAGCTCCCTATTAAGCATTGCTTCAGCATTTTTATACAACTT
TCTAGACAGGGCATCAGCTTCAATATTCTCCTTTCCAGGAATGAATGTAC
TGGTAATCCATATACAATTTTCAATACAGTATTCCCAAATAAGTTGTCCT
AATTTATTACAATTAGTGCTGTGACTGGTTCCCATTTTATTGATAGTTGA
AACAGCAGTAACATTATCACAGTACACTTTAATGTGtgaattttttatgt
attttgtaAACTTAGTGATTGTATTGAGTATTGCCTGCATTTCTAACACA
TTAATGTGTACATCTTCAACAAAATCCCAATGACCAGATAACTTTTTATT
GGAAAATACAGCACCCCACCCTGTTTTTGAAGCATCAGTATATATTTCAT
GATCAAAAGGGGGTAGATCAATAGATTTCTTCATGTCCATGACCTTATCT
CTCCACCAGGAGCATTCTATTTTACATTCAGGAGTGAGCCTAATTTTAGC
ATCAAAATTGCCTTTGTTTTCTCGAAGACAAACAGTTTTATAGCTTTCAA
GACATCTATAGTGTAATGGCCCATATGTTGAGCCAGGAAAGGTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034974XLOC_034974Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055602-proteinTCONS_00055602-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055602-exon-scaffold_253-1491911889:347798..348913TCONS_00055602-exon-scaffold_253-1491911889:347798..348913Clytia hemisphaericaexon
TCONS_00055602-exon-scaffold_253-1510915933:347798..348913TCONS_00055602-exon-scaffold_253-1510915933:347798..348913Clytia hemisphaericaexon
TCONS_00055602-exon-scaffold_253-1575043694:347798..348913TCONS_00055602-exon-scaffold_253-1575043694:347798..348913Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:347798..348913 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.650825 tpm) - - (2.63368 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.679874 0.739729 1.15165 1.22461 1.83339 1.52386 1.45011 1.33834 1.71254 2.02212 2.19151 2.18501 1.93368 2.03259 0.935646 0.977828 1.18016 0.896508 0.928966 1.4574 1.4259 1.66048 0.650825 1.0372 1.65699 2.63368 1.20509 0.728034 1.38372 0.85382
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
10020030040050060070080090010001100Sequence
Match NameE-valueIdentityDescription
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