TCONS_00055603 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055603
Unique NameTCONS_00055603
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055603 ID=TCONS_00055603|Name=TCONS_00055603|organism=Clytia hemisphaerica|type=transcript|length=239bp
tttttttaatttttatagaaattttaaaaagttgggcTTTTATTATAAAC
TGGGCTTAGATTGATGTTACACTTTATTTTTTAGATTCGTAAAAACGTTT
CCTCTAAAggagactttttattttaccatGCTCTGACAGGTGCCTAATTA
TGGGGCTTTGTTTGTTAATTTTTATATATCCcccaaaatattgattttta
ttaAAGTTCATCAcctatacagtgtgtcccaaaaaagca
Run BLAST on NCBI

transcript from alignment at scaffold_253:437085..437323

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055603 ID=TCONS_00055603|Name=TCONS_00055603|organism=Clytia hemisphaerica|type=transcript|length=239bp|location=Sequence derived from alignment at scaffold_253:437085..437323 (Clytia hemisphaerica)
tgcttttttgggacacactgtataggTGATGAACTTtaataaaaatcaat
attttgggGGATATATAAAAATTAACAAACAAAGCCCCATAATTAGGCAC
CTGTCAGAGCatggtaaaataaaaagtctccTTTAGAGGAAACGTTTTTA
CGAATCTAAAAAATAAAGTGTAACATCAATCTAAGCCCAGTTTATAATAA
AAgcccaactttttaaaatttctataaaaattaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034975XLOC_034975Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055603-exon-scaffold_253-1491911889:437085..437323TCONS_00055603-exon-scaffold_253-1491911889:437085..437323Clytia hemisphaericaexon
TCONS_00055603-exon-scaffold_253-1510915933:437085..437323TCONS_00055603-exon-scaffold_253-1510915933:437085..437323Clytia hemisphaericaexon
TCONS_00055603-exon-scaffold_253-1575043694:437085..437323TCONS_00055603-exon-scaffold_253-1575043694:437085..437323Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:437085..437323 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.914038	1.78266	2.38346	1.01251	7.39579	0	4.70056	4.40061	3.85121	4.04029	1.85209	7.30493	1.82369	0.631308	1.03804	0.556989	0.686165	2.24166	0	2.03351	7.48623	10.5004	8.38415	8.94874	3.92545	1.75169	14.3243	8.59704	12.1741	11.3699
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055603 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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