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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055606 ID=TCONS_00055606|Name=TCONS_00055606|organism=Clytia hemisphaerica|type=transcript|length=1083bp
CAAAAAGGAAGTTTTATCAACACTGGGAAaacaggaggatggaaaaacAA
ACTTTGTGAAGAAACTATTGAGAAGTTTAAAAAATGGGAAGANATGGCAG
CAATGAAGAATGAGCAAAAGGGAAGTTTTATCAACACTGGGAAgacagga
ggatggaaaaacAAACTCACTGAAGAAACTATTGAGAGATTTAAAAAATG
GGAAGGGAAATGGTTGAAGGACACTGGATTAATGTTTGCTtatgaagttt
gattttttatttaatatcatttatttaattttttagttagcattttacaa
ttattttttaaaagatttaaacttttttttgtttcagcaTTTTTCCAAAT
TGGGCTGAATGGGGGGAAATTTAGGAAAACAATATCAGATTTGTTTATTG
GTCACATGAGATTACCATTCCTATCTGCCGGGTACGccacaaaaatgttt
ttctctttaaagtGGATTTTATTGAGGTCTAAAGATTTTTAAGAGAACCA
TTCctttctatgataaagaagacagaaaaagttaaatttagGACCTGGTA
GTATGTCAGTAGTATACTGAAGAAGAGTTTTTCACTCAACTGGTTGGCAA
GAAAATTACCCTAAGCGAAATTAAGTATAGATAATATTTACACGTCTTAC
TCTACGAACCATCCCTATATAGCAAtttaaaattagatttaaacaaaaaa
agaacaatggAAATAAAACAAATACCAATCAACAATGAAGATTTGCAGAG
GTTTAGCAGCCATTGTCATAAATATAAAGATCATCCCTTGAGTATGTTGG
AACCATACCATCAAGTCTTTCCATCTTTTTATATGGATCACCACAAATCA
TTTCAAGAAGCTGAAGTTTATGAAGATGATGTTTGGATTTGCACTTTCCC
AAAATCAGGTAGAATTAATGGGTGCTTGTTTTGTGTATTTACAGCTTGAA
TTACAAGCTTTTTCCATATGGCAAAAAATTTACCCTTGTGTCAGTTTAAC
CCGAATCTCCTTTGACATAGGTTTGAGATTGATCTTTGTAAATAAAACCT
TTTTACTTCATGAGTGCATATTGAAGCCGGCAT Run BLAST on NCBI transcript from alignment at scaffold_253:448688..449770 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055606 ID=TCONS_00055606|Name=TCONS_00055606|organism=Clytia hemisphaerica|type=transcript|length=1083bp|location=Sequence derived from alignment at scaffold_253:448688..449770 (Clytia hemisphaerica)
ATGCCGGCTTCAATATGCACTCATGAAGTAAAAAGGTTTTATTTACAAAG
ATCAATCTCAAACCTATGTCAAAGGAGATTCGGGTTAAACTGACACAAGG
GTAAATTTTTTGCCATATGGAAAAAGCTTGTAATTCAAGCTGTAAATACA
CAAAACAAGCACCCATTAATTCTACCTGATTTTGGGAAAGTGCAAATCCA
AACATCATCTTCATAAACTTCAGCTTCTTGAAATGATTTGTGGTGATCCA
TATAAAAAGATGGAAAGACTTGATGGTATGGTTCCAACATACTCAAGGGA
TGATCTTTATATTTATGACAATGGCTGCTAAACCTCTGCAAATCTTCATT
GTTGATTGGTATTTGTTTTATTTccattgttctttttttgtttaaatcta
attttaaaTTGCTATATAGGGATGGTTCGTAGAGTAAGACGTGTAAATAT
TATCTATACTTAATTTCGCTTAGGGTAATTTTCTTGCCAACCAGTTGAGT
GAAAAACTCTTCTTCAGTATACTACTGACATACTACCAGGTCctaaattt
aactttttctgtcttctttatcatagaaagGAATGGTTCTCTTAAAAATC
TTTAGACCTCAATAAAATCCactttaaagagaaaaacatttttgtggCGT
ACCCGGCAGATAGGAATGGTAATCTCATGTGACCAATAAACAAATCTGAT
ATTGTTTTCCTAAATTTCCCCCCATTCAGCCCAATTTGGAAAAAtgctga
aacaaaaaaaagtttaaatcttttaaaaaataattgtaaaatgctaacta
aaaaattaaataaatgatattaaataaaaaatcaaacttcataAGCAAAC
ATTAATCCAGTGTCCTTCAACCATTTCCCTTCCCATTTTTTAAATCTCTC
AATAGTTTCTTCAGTGAGTTTgtttttccatcctcctgtcTTCCCAGTGT
TGATAAAACTTCCCTTTTGCTCATTCTTCATTGCTGCCATNTCTTCCCAT
TTTTTAAACTTCTCAATAGTTTCTTCACAAAGTTTgtttttccatcctcc
tgttTTCCCAGTGTTGATAAAACTTCCTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055606-exon-scaffold_253-1491911889:448688..449770 | TCONS_00055606-exon-scaffold_253-1491911889:448688..449770 | Clytia hemisphaerica | exon |
| TCONS_00055606-exon-scaffold_253-1510915933:448688..449770 | TCONS_00055606-exon-scaffold_253-1510915933:448688..449770 | Clytia hemisphaerica | exon |
| TCONS_00055606-exon-scaffold_253-1575043694:448688..449770 | TCONS_00055606-exon-scaffold_253-1575043694:448688..449770 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:448688..449770 . |
Blast
The following BLAST results are available for this feature:
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