TCONS_00055614 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055614
Unique NameTCONS_00055614
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055614 ID=TCONS_00055614|Name=TCONS_00055614|organism=Clytia hemisphaerica|type=transcript|length=453bp
TTCGGACTTCACACTCCGAATAATTTGGAAAATAATAACTGAGAAGTTCC
AGAAGTTCCAGGCCGTTacagtattttgaaaatattgttttcaactCTCT
GCAGAATCAACTCTCAAATCACCAATTCGTTTCTCTTCCCAATTAAATTA
TAAACATATTTTTAGTATTATTTGTAATGtagttatttttgaaaaattag
tttttggaggggatttatttaaaacaatttaaCTTTAGTACAGTAGGAAA
ACAAATCTTGACTCCAGTCAGAAATATATCCGTGTACCATTCGAATCACC
caagtttgaagttttatatttgaaatttcagactttttgaatttttttta
gtttagatTTAatgttaaagattttatttcctttaaattttctgttTACG
TAAAATGTCCTTAGGAACCAGATAACATTTGTTTTGTCTGGTTTTGATTA
GAA
Run BLAST on NCBI

transcript from alignment at scaffold_253:530358..530810

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055614 ID=TCONS_00055614|Name=TCONS_00055614|organism=Clytia hemisphaerica|type=transcript|length=453bp|location=Sequence derived from alignment at scaffold_253:530358..530810 (Clytia hemisphaerica)
TTCTAATCAAAACCAGACAAAACAAATGTTATCTGGTTCCTAAGGACATT
TTACGTAaacagaaaatttaaaggaaataaaatctttaacatTAAatcta
aactaaaaaaaattcaaaaagtctgaaatttcaaatataaaacttcaaac
ttgGGTGATTCGAATGGTACACGGATATATTTCTGACTGGAGTCAAGATT
TGTTTTCCTACTGTACTAAAGttaaattgttttaaataaatcccctccaa
aaactaatttttcaaaaataactaCATTACAAATAATACTAAAAATATGT
TTATAATTTAATTGGGAAGAGAAACGAATTGGTGATTTGAGAGTTGATTC
TGCAGAGagttgaaaacaatattttcaaaatactgtAACGGCCTGGAACT
TCTGGAACTTCTCAGTTATTATTTTCCAAATTATTCGGAGTGTGAAGTCC
GAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034986XLOC_034986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055614-exon-scaffold_253-1491911889:530358..530810TCONS_00055614-exon-scaffold_253-1491911889:530358..530810Clytia hemisphaericaexon
TCONS_00055614-exon-scaffold_253-1510915933:530358..530810TCONS_00055614-exon-scaffold_253-1510915933:530358..530810Clytia hemisphaericaexon
TCONS_00055614-exon-scaffold_253-1575043694:530358..530810TCONS_00055614-exon-scaffold_253-1575043694:530358..530810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:530358..530810 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89073	1.77656	0.959264	2.07729	1.85862	0.464837	2.1163	2.50736	0.730624	2.67199	1.50594	0.953988	0.407802	0.521236	0.660771	0.726174	1.6249	1.12735	1.30812	2.10857	5.25133	3.51858	3.3536	4.08754	0	0.431468	21.8533	21.9403	14.8009	14.7938
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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