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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055618 ID=TCONS_00055618|Name=TCONS_00055618|organism=Clytia hemisphaerica|type=transcript|length=735bp
ACATATTACCACCAATAGAAGGCAATCTCCAACAAGAAGAATTGATCGTA
CCTCTCTCTGAAAATGTCAACTTGATGGCCAATAATGAAATTGTAGAAAG
CGTCCCCCTTGGCGACACATTGGTTACTAATGGAATTGATGTCCTTGATG
CCCATGAAATTGACCCGTCTCCAGAAAAAGATGATGAGCTTGAATCCAAA
CTGTCTGAGAAGCCTTTGCTCGTTGAAGAGTTGAATGCGAGGATAACCGA
ACTTGAAGTCGACAAAACCAATTCTGAAGAGCGAATGGCTTTCAACGATC
TGAATGTCGAGAAACTTCGTAATGAGTTATCTGAGAAAGAATCTTTGTTG
GAGGAATTGCAGTCGAAGATTGAAAGGCTtgaaagagaaaatcacaatAC
AAATCAGGCTTCCTTTGAGAGCATCGTTCCAGTTGAAGATTTTGAACAGC
TCAAAGCTGATCTTTCCGAAAAGGAAATTGTAATTGAAGACCTTCAAACC
AAGATTAGTGAGCTGGAGAATGAATGCATTGCAATTGGTGAAAGTTCAGT
CAGCCAACTCTCCATGTTGAATAACGATGTTGACGAGTTAGCGTTGAAAG
TCACTGAACAGGAACAACTTCTTGAACGAAATGAGCAAGAAAAAGAAGGG
TTACTACGTTCCATCGATGTGAAAGAAGCTACAATCATCCATTTGGAATC
TCAAATCAATATTCTCCAGGACGAATACAACTCTG Run BLAST on NCBI protein sequence of TCONS_00055618-protein >TCONS_00055618-protein ID=TCONS_00055618-protein|Name=TCONS_00055618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
ILPPIEGNLQQEELIVPLSENVNLMANNEIVESVPLGDTLVTNGIDVLDA
HEIDPSPEKDDELESKLSEKPLLVEELNARITELEVDKTNSEERMAFNDL
NVEKLRNELSEKESLLEELQSKIERLERENHNTNQASFESIVPVEDFEQL
KADLSEKEIVIEDLQTKISELENECIAIGESSVSQLSMLNNDVDELALKV
TEQEQLLERNEQEKEGLLRSIDVKEATIIHLESQINILQDEYNS Run BLAST on NCBI transcript from alignment at scaffold_253:597456..598190 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055618 ID=TCONS_00055618|Name=TCONS_00055618|organism=Clytia hemisphaerica|type=transcript|length=735bp|location=Sequence derived from alignment at scaffold_253:597456..598190 (Clytia hemisphaerica)
CAGAGTTGTATTCGTCCTGGAGAATATTGATTTGAGATTCCAAATGGATG
ATTGTAGCTTCTTTCACATCGATGGAACGTAGTAACCCTTCTTTTTCTTG
CTCATTTCGTTCAAGAAGTTGTTCCTGTTCAGTGACTTTCAACGCTAACT
CGTCAACATCGTTATTCAACATGGAGAGTTGGCTGACTGAACTTTCACCA
ATTGCAATGCATTCATTCTCCAGCTCACTAATCTTGGTTTGAAGGTCTTC
AATTACAATTTCCTTTTCGGAAAGATCAGCTTTGAGCTGTTCAAAATCTT
CAACTGGAACGATGCTCTCAAAGGAAGCCTGATTTGTattgtgattttct
ctttcaAGCCTTTCAATCTTCGACTGCAATTCCTCCAACAAAGATTCTTT
CTCAGATAACTCATTACGAAGTTTCTCGACATTCAGATCGTTGAAAGCCA
TTCGCTCTTCAGAATTGGTTTTGTCGACTTCAAGTTCGGTTATCCTCGCA
TTCAACTCTTCAACGAGCAAAGGCTTCTCAGACAGTTTGGATTCAAGCTC
ATCATCTTTTTCTGGAGACGGGTCAATTTCATGGGCATCAAGGACATCAA
TTCCATTAGTAACCAATGTGTCGCCAAGGGGGACGCTTTCTACAATTTCA
TTATTGGCCATCAAGTTGACATTTTCAGAGAGAGGTACGATCAATTCTTC
TTGTTGGAGATTGCCTTCTATTGGTGGTAATATGT Coding sequence (CDS) from alignment at scaffold_253:597456..598190 >TCONS_00055618 ID=TCONS_00055618|Name=TCONS_00055618|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_253:597456..598190 (Clytia hemisphaerica)
AGAGTTGTATTCGTCCTGGAGAATATTGATTTGAGATTCCAAATGGATGA
TTGTAGCTTCTTTCACATCGATGGAACGTAGTAACCCTTCTTTTTCTTGC
TCATTTCGTTCAAGAAGTTGTTCCTGTTCAGTGACTTTCAACGCTAACTC
GTCAACATCGTTATTCAACATGGAGAGTTGGCTGACTGAACTTTCACCAA
TTGCAATGCATTCATTCTCCAGCTCACTAATCTTGGTTTGAAGGTCTTCA
ATTACAATTTCCTTTTCGGAAAGATCAGCTTTGAGCTGTTCAAAATCTTC
AACTGGAACGATGCTCTCAAAGGAAGCCTGATTTGTattgtgattttctc
tttcaAGCCTTTCAATCTTCGACTGCAATTCCTCCAACAAAGATTCTTTC
TCAGATAACTCATTACGAAGTTTCTCGACATTCAGATCGTTGAAAGCCAT
TCGCTCTTCAGAATTGGTTTTGTCGACTTCAAGTTCGGTTATCCTCGCAT
TCAACTCTTCAACGAGCAAAGGCTTCTCAGACAGTTTGGATTCAAGCTCA
TCATCTTTTTCTGGAGACGGGTCAATTTCATGGGCATCAAGGACATCAAT
TCCATTAGTAACCAATGTGTCGCCAAGGGGGACGCTTTCTACAATTTCAT
TATTGGCCATCAAGTTGACATTTTCAGAGAGAGGTACGATCAATTCTTCT
TGTTGGAGATTGCCTTCTATTGGTGGTAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055618-exon-scaffold_253-1491911889:597456..598190 | TCONS_00055618-exon-scaffold_253-1491911889:597456..598190 | Clytia hemisphaerica | exon |
| TCONS_00055618-exon-scaffold_253-1510915933:597456..598190 | TCONS_00055618-exon-scaffold_253-1510915933:597456..598190 | Clytia hemisphaerica | exon |
| TCONS_00055618-exon-scaffold_253-1575043694:597456..598190 | TCONS_00055618-exon-scaffold_253-1575043694:597456..598190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:597456..598190 . |
Blast
The following BLAST results are available for this feature:
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