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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055624 ID=TCONS_00055624|Name=TCONS_00055624|organism=Clytia hemisphaerica|type=transcript|length=2837bp
TTTAAAGTGGAGACCGAGAAGGAAATGAGATGCAGACTATGTTATATTCA
TATACTGACACAGAAACCAGTTTACTTCGTCTAGCTGACCTTGTTTTAAG
GCATGATGATGTTTAAACACGTGCTTTGGGTTTATATATTCCTACTAACG
CCGAATGACTTTTTAAACACAGTGGAATGCGAagattcaaaaaagatttt
agcTGCGGAAGGGAGAGAAGTTGTCGTACAATTTGGTCAGGATAACGATG
GTGGAGTCAAAGAGAGCAAACATTTAAAAGGAGTTATAGTACCCCTTGGT
ACAAATTCTCCGTTCGCtaaattcctatctctaaaTAAACGGAATAAAAC
TGATGGGATGGAGAATGATCATAATAAGAACGATTCAAAATTGAATGATT
TATCAAAAACTGTTTTGTCGAAAGTCCAAGATCTACATGCTCAGACGAAC
ATGAGCAAGGACGTATCGTCGAATAGTACATTCGCATCCAATGGTTTTAG
AAACGAAACAGAGAAAGTGGATACAAATGCGCCAATCTCAGGACAAGATT
GGAATTCATTGCTAGCAAATCTAATATCCAGTTCAAATCCAACCATTAAG
CGAGGCGATAAAGGTGAAACGGAAATCAGAATCGAACTAGATACTAAAGA
CTTGGATAGATTTAAGCAACGACCAATGGTAAAAGAAACCAAAACATCGA
agaaaaataatacaataacAAGAATGCCTCCTTTACAAATGAATCGGACG
GTAGATTCAACTTTTCAACATAGAAAATCAAAGACAGGATATGGTAACTT
GATAGAAAAACAGAAACAGATTCTCGCAAAGAAAGCCAAAGCATTGAGCA
AAATGGCGAAACTTGCAAGTAAAAACTTAATCGAGATCAAAAGGTTGGAG
CTTGAAGCAATTCGCCAACAAAAGAAATTAGGGGAGGCACAATCAGAGCA
AAGTGACAACAGACAATATTTTATCCAGGAAAAGGAATTCAGTTACGATG
ATTATGACGGGTACAAAGATATTGATGGTTTCGCATCTAAAATCCCACAT
GACGCTTTGGCTATTTTTGAGAATAAACATACAGAAAGCTCATCGAAACC
TAAAGAAAATATCGAGTTTAAAAATAGTAGTTCACTTGGACAAGAAATAT
TTAATGCTACCAATGTCATTGTAACGCATCAACATAAAGAAGAACCACAG
ATGTTTCAAGGACCACATGCTTTATCCTTAGTGGGTAATTTCATACCAAG
TGCAGTTGTTAAAAACCCGACCTCTGCAGCTGTAGAAGAGGCCCCCGCTC
CACCACCAATTGTTCCTATCACAACTACCACAACTACTACTACTACGACC
ACAACCACTCcatcaccaccaccaccaccagctCCACCTccgccaccacc
accaccaccaccaccaccgccGCCGCCTCCTTCACCGCCCACAACGCCAC
CACCTACCACAGCTACTACAGGAATTGTTCCAATAACTACACCAGCGTCA
ATTGTTAACACAACATTATCAGAACTTTCACCAAGTCAATCAGatctttt
acaaaagaatctaGATACTGTATCTTCTCCATCTGCGTCAAGCTCTGGAA
ATAGTCAAGTGAATCTAGCACCATTTGAGATGTCATCAAGCAGTCCACAA
CAATCCCCAAGTGTTTCACAAACCAAAGACGAACAACAGCCGAAAGATGA
AATGCTGGCGGGAGACAGTATCCCTGCTTCCCCAATGGTTGGTCAAGAGT
ACCACCCAACTGTTAGTAACTCTAGCAATCCAAATGCAAAAGCTGTGGTA
GCACCAGTCGACAAATCTCCAACAAATTCTAAACCAAACGTAGTAAGCCa
agataaaaacattgaaattgagAACAAATTAACAAATGGTAAACACCGta
ttaaaattttacttttaaacgAAGATGAAGATAAAGTTCCAAACAAACAG
CCAACATTACATATGTTTAAACCAAAAAATGTGTTTGAAACTGGCATCAA
AAAGGAACTGTGTTCAGGAGCCGATTATATAAGATGTCTAGAGAAGAGTA
GTTCAGATAATCGTGTTTTATTCCCAGACGTTGAAAGATCGTCACCGGAG
ATGTCAATGGAAGGACGTAGATTCCATGGAGCTCCCAGTGAgaatgaaga
ttttaactttATGAGAAGCTATCATGAAAAACCGTTCTTTTTATTGAGTA
AACCTCGTGAAAGAAATTTGTATGGAGATAGAGATAATGAGAACTCGTAT
GAGCACGCCAACAGTGCACAAGATGCTAGTAGTAGAACTCTTTATAGAGA
TGATCAGAACTCATATGAAAATGATCGAGAGCCCGGCGAACGACATTTTT
TGAGGACCGATTTAATAAATGCACCTCACGATGTTATTGTTGAGAATCGC
AATTTCGAAGATGGTAATTATCATGCTGAGGAAGGCAGGAGCCAACATGA
TAGACTTTATTCAAACGAAATGGAAGCTCAAAATATGGAGTTTGCTATAC
AAAGCGCAGCTGCTGATGCAACTCAAAAAaacactttgaaatctttcgcA
ACTGACGAAGCAGCCTCGTTTAATGGAGCTGTTAAGAATGGCGAGGAGTA
TTATTTTAAACGAAACCAGAAACTAAACTGGAGAAAAACTAAAGAACCAA
GAATGAAGAATAATCCTTCGTTTAACACATCCAAGATATAAACATAGTTT
AGTTAGGTTCAAAAATACTACTCAAATGTGATTTCTAGAGTTACTGTAAT
TAGGAATaaagaaactttaaaattttctatCGAGCACTTGATTACTGCTG
AAATCTTTTTAATCATAgaaagctataggtcattttt Run BLAST on NCBI protein sequence of TCONS_00055624-protein >TCONS_00055624-protein ID=TCONS_00055624-protein|Name=TCONS_00055624-protein|organism=Clytia hemisphaerica|type=polypeptide|length=862bp
MMMFKHVLWVYIFLLTPNDFLNTVECEDSKKILAAEGREVVVQFGQDNDG
GVKESKHLKGVIVPLGTNSPFAKFLSLNKRNKTDGMENDHNKNDSKLNDL
SKTVLSKVQDLHAQTNMSKDVSSNSTFASNGFRNETEKVDTNAPISGQDW
NSLLANLISSSNPTIKRGDKGETEIRIELDTKDLDRFKQRPMVKETKTSK
KNNTITRMPPLQMNRTVDSTFQHRKSKTGYGNLIEKQKQILAKKAKALSK
MAKLASKNLIEIKRLELEAIRQQKKLGEAQSEQSDNRQYFIQEKEFSYDD
YDGYKDIDGFASKIPHDALAIFENKHTESSSKPKENIEFKNSSSLGQEIF
NATNVIVTHQHKEEPQMFQGPHALSLVGNFIPSAVVKNPTSAAVEEAPAP
PPIVPITTTTTTTTTTTTTPSPPPPPAPPPPPPPPPPPPPPPPSPPTTPP
PTTATTGIVPITTPASIVNTTLSELSPSQSDLLQKNLDTVSSPSASSSGN
SQVNLAPFEMSSSSPQQSPSVSQTKDEQQPKDEMLAGDSIPASPMVGQEY
HPTVSNSSNPNAKAVVAPVDKSPTNSKPNVVSQDKNIEIENKLTNGKHRI
KILLLNEDEDKVPNKQPTLHMFKPKNVFETGIKKELCSGADYIRCLEKSS
SDNRVLFPDVERSSPEMSMEGRRFHGAPSENEDFNFMRSYHEKPFFLLSK
PRERNLYGDRDNENSYEHANSAQDASSRTLYRDDQNSYENDREPGERHFL
RTDLINAPHDVIVENRNFEDGNYHAEEGRSQHDRLYSNEMEAQNMEFAIQ
SAAADATQKNTLKSFATDEAASFNGAVKNGEEYYFKRNQKLNWRKTKEPR
MKNNPSFNTSKI Run BLAST on NCBI transcript from alignment at scaffold_253:719437..722273 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055624 ID=TCONS_00055624|Name=TCONS_00055624|organism=Clytia hemisphaerica|type=transcript|length=2837bp|location=Sequence derived from alignment at scaffold_253:719437..722273 (Clytia hemisphaerica)
aaaaatgacctatagctttcTATGATTAAAAAGATTTCAGCAGTAATCAA
GTGCTCGatagaaaattttaaagtttctttATTCCTAATTACAGTAACTC
TAGAAATCACATTTGAGTAGTATTTTTGAACCTAACTAAACTATGTTTAT
ATCTTGGATGTGTTAAACGAAGGATTATTCTTCATTCTTGGTTCTTTAGT
TTTTCTCCAGTTTAGTTTCTGGTTTCGTTTAAAATAATACTCCTCGCCAT
TCTTAACAGCTCCATTAAACGAGGCTGCTTCGTCAGTTgcgaaagatttc
aaagtgttTTTTTGAGTTGCATCAGCAGCTGCGCTTTGTATAGCAAACTC
CATATTTTGAGCTTCCATTTCGTTTGAATAAAGTCTATCATGTTGGCTCC
TGCCTTCCTCAGCATGATAATTACCATCTTCGAAATTGCGATTCTCAACA
ATAACATCGTGAGGTGCATTTATTAAATCGGTCCTCAAAAAATGTCGTTC
GCCGGGCTCTCGATCATTTTCATATGAGTTCTGATCATCTCTATAAAGAG
TTCTACTACTAGCATCTTGTGCACTGTTGGCGTGCTCATACGAGTTCTCA
TTATCTCTATCTCCATACAAATTTCTTTCACGAGGTTTACTCAATAAAAA
GAACGGTTTTTCATGATAGCTTCTCATaaagttaaaatcttcattcTCAC
TGGGAGCTCCATGGAATCTACGTCCTTCCATTGACATCTCCGGTGACGAT
CTTTCAACGTCTGGGAATAAAACACGATTATCTGAACTACTCTTCTCTAG
ACATCTTATATAATCGGCTCCTGAACACAGTTCCTTTTTGATGCCAGTTT
CAAACACATTTTTTGGTTTAAACATATGTAATGTTGGCTGTTTGTTTGGA
ACTTTATCTTCATCTTcgtttaaaagtaaaattttaataCGGTGTTTACC
ATTTGTTAATTTGTTctcaatttcaatgtttttatcttGGCTTACTACGT
TTGGTTTAGAATTTGTTGGAGATTTGTCGACTGGTGCTACCACAGCTTTT
GCATTTGGATTGCTAGAGTTACTAACAGTTGGGTGGTACTCTTGACCAAC
CATTGGGGAAGCAGGGATACTGTCTCCCGCCAGCATTTCATCTTTCGGCT
GTTGTTCGTCTTTGGTTTGTGAAACACTTGGGGATTGTTGTGGACTGCTT
GATGACATCTCAAATGGTGCTAGATTCACTTGACTATTTCCAGAGCTTGA
CGCAGATGGAGAAGATACAGTATCtagattcttttgtaaaagatCTGATT
GACTTGGTGAAAGTTCTGATAATGTTGTGTTAACAATTGACGCTGGTGTA
GTTATTGGAACAATTCCTGTAGTAGCTGTGGTAGGTGGTGGCGTTGTGGG
CGGTGAAGGAGGCGGCggcggtggtggtggtggtggtggtggtggcggAG
GTGGagctggtggtggtggtggtgatgGAGTGGTTGTGGTCGTAGTAGTA
GTAGTTGTGGTAGTTGTGATAGGAACAATTGGTGGTGGAGCGGGGGCCTC
TTCTACAGCTGCAGAGGTCGGGTTTTTAACAACTGCACTTGGTATGAAAT
TACCCACTAAGGATAAAGCATGTGGTCCTTGAAACATCTGTGGTTCTTCT
TTATGTTGATGCGTTACAATGACATTGGTAGCATTAAATATTTCTTGTCC
AAGTGAACTACTATTTTTAAACTCGATATTTTCTTTAGGTTTCGATGAGC
TTTCTGTATGTTTATTCTCAAAAATAGCCAAAGCGTCATGTGGGATTTTA
GATGCGAAACCATCAATATCTTTGTACCCGTCATAATCATCGTAACTGAA
TTCCTTTTCCTGGATAAAATATTGTCTGTTGTCACTTTGCTCTGATTGTG
CCTCCCCTAATTTCTTTTGTTGGCGAATTGCTTCAAGCTCCAACCTTTTG
ATCTCGATTAAGTTTTTACTTGCAAGTTTCGCCATTTTGCTCAATGCTTT
GGCTTTCTTTGCGAGAATCTGTTTCTGTTTTTCTATCAAGTTACCATATC
CTGTCTTTGATTTTCTATGTTGAAAAGTTGAATCTACCGTCCGATTCATT
TGTAAAGGAGGCATTCTTgttattgtattatttttctTCGATGTTTTGGT
TTCTTTTACCATTGGTCGTTGCTTAAATCTATCCAAGTCTTTAGTATCTA
GTTCGATTCTGATTTCCGTTTCACCTTTATCGCCTCGCTTAATGGTTGGA
TTTGAACTGGATATTAGATTTGCTAGCAATGAATTCCAATCTTGTCCTGA
GATTGGCGCATTTGTATCCACTTTCTCTGTTTCGTTTCTAAAACCATTGG
ATGCGAATGTACTATTCGACGATACGTCCTTGCTCATGTTCGTCTGAGCA
TGTAGATCTTGGACTTTCGACAAAACAGTTTTTGATAAATCATTCAATTT
TGAATCGTTCTTATTATGATCATTCTCCATCCCATCAGTTTTATTCCGTT
TAtttagagataggaatttaGCGAACGGAGAATTTGTACCAAGGGGTACT
ATAACTCCTTTTAAATGTTTGCTCTCTTTGACTCCACCATCGTTATCCTG
ACCAAATTGTACGACAACTTCTCTCCCTTCCGCAgctaaaatcttttttg
aatctTCGCATTCCACTGTGTTTAAAAAGTCATTCGGCGTTAGTAGGAAT
ATATAAACCCAAAGCACGTGTTTAAACATCATCATGCCTTAAAACAAGGT
CAGCTAGACGAAGTAAACTGGTTTCTGTGTCAGTATATGAATATAACATA
GTCTGCATCTCATTTCCTTCTCGGTCTCCACTTTAAA Coding sequence (CDS) from alignment at scaffold_253:719437..722273 >TCONS_00055624 ID=TCONS_00055624|Name=TCONS_00055624|organism=Clytia hemisphaerica|type=CDS|length=2589bp|location=Sequence derived from alignment at scaffold_253:719437..722273 (Clytia hemisphaerica)
TTATATCTTGGATGTGTTAAACGAAGGATTATTCTTCATTCTTGGTTCTT
TAGTTTTTCTCCAGTTTAGTTTCTGGTTTCGTTTAAAATAATACTCCTCG
CCATTCTTAACAGCTCCATTAAACGAGGCTGCTTCGTCAGTTgcgaaaga
tttcaaagtgttTTTTTGAGTTGCATCAGCAGCTGCGCTTTGTATAGCAA
ACTCCATATTTTGAGCTTCCATTTCGTTTGAATAAAGTCTATCATGTTGG
CTCCTGCCTTCCTCAGCATGATAATTACCATCTTCGAAATTGCGATTCTC
AACAATAACATCGTGAGGTGCATTTATTAAATCGGTCCTCAAAAAATGTC
GTTCGCCGGGCTCTCGATCATTTTCATATGAGTTCTGATCATCTCTATAA
AGAGTTCTACTACTAGCATCTTGTGCACTGTTGGCGTGCTCATACGAGTT
CTCATTATCTCTATCTCCATACAAATTTCTTTCACGAGGTTTACTCAATA
AAAAGAACGGTTTTTCATGATAGCTTCTCATaaagttaaaatcttcattc
TCACTGGGAGCTCCATGGAATCTACGTCCTTCCATTGACATCTCCGGTGA
CGATCTTTCAACGTCTGGGAATAAAACACGATTATCTGAACTACTCTTCT
CTAGACATCTTATATAATCGGCTCCTGAACACAGTTCCTTTTTGATGCCA
GTTTCAAACACATTTTTTGGTTTAAACATATGTAATGTTGGCTGTTTGTT
TGGAACTTTATCTTCATCTTcgtttaaaagtaaaattttaataCGGTGTT
TACCATTTGTTAATTTGTTctcaatttcaatgtttttatcttGGCTTACT
ACGTTTGGTTTAGAATTTGTTGGAGATTTGTCGACTGGTGCTACCACAGC
TTTTGCATTTGGATTGCTAGAGTTACTAACAGTTGGGTGGTACTCTTGAC
CAACCATTGGGGAAGCAGGGATACTGTCTCCCGCCAGCATTTCATCTTTC
GGCTGTTGTTCGTCTTTGGTTTGTGAAACACTTGGGGATTGTTGTGGACT
GCTTGATGACATCTCAAATGGTGCTAGATTCACTTGACTATTTCCAGAGC
TTGACGCAGATGGAGAAGATACAGTATCtagattcttttgtaaaagatCT
GATTGACTTGGTGAAAGTTCTGATAATGTTGTGTTAACAATTGACGCTGG
TGTAGTTATTGGAACAATTCCTGTAGTAGCTGTGGTAGGTGGTGGCGTTG
TGGGCGGTGAAGGAGGCGGCggcggtggtggtggtggtggtggtggtggc
ggAGGTGGagctggtggtggtggtggtgatgGAGTGGTTGTGGTCGTAGT
AGTAGTAGTTGTGGTAGTTGTGATAGGAACAATTGGTGGTGGAGCGGGGG
CCTCTTCTACAGCTGCAGAGGTCGGGTTTTTAACAACTGCACTTGGTATG
AAATTACCCACTAAGGATAAAGCATGTGGTCCTTGAAACATCTGTGGTTC
TTCTTTATGTTGATGCGTTACAATGACATTGGTAGCATTAAATATTTCTT
GTCCAAGTGAACTACTATTTTTAAACTCGATATTTTCTTTAGGTTTCGAT
GAGCTTTCTGTATGTTTATTCTCAAAAATAGCCAAAGCGTCATGTGGGAT
TTTAGATGCGAAACCATCAATATCTTTGTACCCGTCATAATCATCGTAAC
TGAATTCCTTTTCCTGGATAAAATATTGTCTGTTGTCACTTTGCTCTGAT
TGTGCCTCCCCTAATTTCTTTTGTTGGCGAATTGCTTCAAGCTCCAACCT
TTTGATCTCGATTAAGTTTTTACTTGCAAGTTTCGCCATTTTGCTCAATG
CTTTGGCTTTCTTTGCGAGAATCTGTTTCTGTTTTTCTATCAAGTTACCA
TATCCTGTCTTTGATTTTCTATGTTGAAAAGTTGAATCTACCGTCCGATT
CATTTGTAAAGGAGGCATTCTTgttattgtattatttttctTCGATGTTT
TGGTTTCTTTTACCATTGGTCGTTGCTTAAATCTATCCAAGTCTTTAGTA
TCTAGTTCGATTCTGATTTCCGTTTCACCTTTATCGCCTCGCTTAATGGT
TGGATTTGAACTGGATATTAGATTTGCTAGCAATGAATTCCAATCTTGTC
CTGAGATTGGCGCATTTGTATCCACTTTCTCTGTTTCGTTTCTAAAACCA
TTGGATGCGAATGTACTATTCGACGATACGTCCTTGCTCATGTTCGTCTG
AGCATGTAGATCTTGGACTTTCGACAAAACAGTTTTTGATAAATCATTCA
ATTTTGAATCGTTCTTATTATGATCATTCTCCATCCCATCAGTTTTATTC
CGTTTAtttagagataggaatttaGCGAACGGAGAATTTGTACCAAGGGG
TACTATAACTCCTTTTAAATGTTTGCTCTCTTTGACTCCACCATCGTTAT
CCTGACCAAATTGTACGACAACTTCTCTCCCTTCCGCAgctaaaatcttt
tttgaatctTCGCATTCCACTGTGTTTAAAAAGTCATTCGGCGTTAGTAG
GAATATATAAACCCAAAGCACGTGTTTAAACATCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055624-exon-scaffold_253-1491911889:719437..722273 | TCONS_00055624-exon-scaffold_253-1491911889:719437..722273 | Clytia hemisphaerica | exon |
| TCONS_00055624-exon-scaffold_253-1510915933:719437..722273 | TCONS_00055624-exon-scaffold_253-1510915933:719437..722273 | Clytia hemisphaerica | exon |
| TCONS_00055624-exon-scaffold_253-1575043694:719437..722273 | TCONS_00055624-exon-scaffold_253-1575043694:719437..722273 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:719437..722273 . |
Blast
The following BLAST results are available for this feature:
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