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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055625 ID=TCONS_00055625|Name=TCONS_00055625|organism=Clytia hemisphaerica|type=transcript|length=1665bp
GTACTTTTGATTTCTGttatgtgattttttttctgtaaaatttatgttGT
TATGCCataaataaacaaatatttCCAAGGATAAATCTAATAGTCTAACA
gtataaattttcaatattttaatttcCAAATCCATTACGTTACAAAATTT
ATTATTCACAAATGGCTAGGTCTTTTAGTagaaaattaggaaatttattc
ttcaaaatttcttttcactaCACTACTAACCACTTTGACTGTTCTTTTAA
CTGTCTTTTTATATTATCAGCTGCTCCccaatttttcgaatttcaTTGGC
TTGGTTCTTTGTATATCTCTTGCTTGGTAAACTCTTGCATCTCCTCATAT
TCCTACCATGCATGCTATTGAAAGACTCCAAACACTTCAAATGTTATTTT
CCCCTTCAAGATTATTTCAGATCATTCGTCTATTAAAGAGTCTTTCAAAT
TTATATCGAGAGTCATTTGTTTCTGGTTACTGTTCTAGATCTTTATCATG
GATACTGAGCATTTGACCCTTGGTAAATTCGTCTCCTTCTATGAATCTGA
TCATTCGTTTCGCTGCTTCCAATGGTATTGTTAGTTTGTTCTCCTCcata
attttcttcaaatcctCTTGTAAGTCTTTATTCCCGCAACTTTCAATCAA
TCGGTGAGTACGTTTCGTATCTAGAGCTCCGGCTGTAAAATTCAATACAC
GGATGGCTGGATTCTCTTTAGCGAACGTCTGAGCGAACGTGTCAATAGCG
CTGGATGCCATACAGCTGGGACCGAGATACGGGTTCGGTTTGGCTGACTC
GTAACGTACTGTATGAACTATGGTTCGCTTTGAATGTTGAAAGACTCGAC
AAAACTGAGTGGTCATGAACATTCGTGACGTAATGTTGATGTTCCAATAT
TGTGCCATATCTGAAGGATCGTCGAACTCAATCAAGGTTTTTGAAGGATC
AGCTAAACTCGATGCATTGTTAACAAAAATAACATGTTCAAAATCCTTCG
CCTGTTTTGTATCCAATCTTTCAATCAGCTTTTTAGATGCAGCAAGGTCT
CCTAGATCAACAACTTCTAACTCGACTTCAATTTTTCGATGCTTCAAGAA
TTGCCTCATTTTCTTTCCAGATGTTTCTTTCAAAGCTTCTTCATCCTTAT
CTACCAAAATAACCCTGGAACCTGACATAGCATCTGGTAGGATCCCTTGA
TCTTGGAAAGCCATACCAGCAATGGCACGTCCCAAACCATTACCAGCACC
TGTCACGAAACATAAGAATTTACCTTTGACCAAGCGTACTTTGTTGCCAT
TACCACGTACTTTGTCCCAGTGAGAAGCACCTGTCAATTTCTGCTTGCTC
CAGGGTGCAGCAACGGGTGCTGATTTACGTCTATCGCCATTAGCGGTAGC
CATGGTTTCTGTGTAACGAATTCCCCAAACAAACTATGGTTCCAATAAAT
CAGTACTTGGTGAATAATGAACAGGTTGCCTTTACATAACCTCTCTCCGT
CACCAGCAAATTTTTCCGTACACAGAAATCTccttttgctttttttgttG
ACAGTTTTCTCTCTGTTGCTTGCTTTATCAAAAGCGTACAAAACTGATGA
GATCTAAATGACGGTTATAATTACAAAAAATCTATGCTCTCCTATTGATC
TCTTTTATCATTCTC Run BLAST on NCBI protein sequence of TCONS_00055625-protein >TCONS_00055625-protein ID=TCONS_00055625-protein|Name=TCONS_00055625-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MATANGDRRKSAPVAAPWSKQKLTGASHWDKVRGNGNKVRLVKGKFLCFV
TGAGNGLGRAIAGMAFQDQGILPDAMSGSRVILVDKDEEALKETSGKKMR
QFLKHRKIEVELEVVDLGDLAASKKLIERLDTKQAKDFEHVIFVNNASSL
ADPSKTLIEFDDPSDMAQYWNINITSRMFMTTQFCRVFQHSKRTIVHTVR
YESAKPNPYLGPSCMASSAIDTFAQTFAKENPAIRVLNFTAGALDTKRTH
RLIESCGNKDLQEDLKKIMEENKLTIPLEAAKRMIRFIEGDEFTKGQMLS
IHDKDLEQ Run BLAST on NCBI transcript from alignment at scaffold_253:897425..899089 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055625 ID=TCONS_00055625|Name=TCONS_00055625|organism=Clytia hemisphaerica|type=transcript|length=1665bp|location=Sequence derived from alignment at scaffold_253:897425..899089 (Clytia hemisphaerica)
GAGAATGATAAAAGAGATCAATAGGAGAGCATAGATTTTTTGTAATTATA
ACCGTCATTTAGATCTCATCAGTTTTGTACGCTTTTGATAAAGCAAGCAA
CAGAGAGAAAACTGTCaacaaaaaaagcaaaaggAGATTTCTGTGTACGG
AAAAATTTGCTGGTGACGGAGAGAGGTTATGTAAAGGCAACCTGTTCATT
ATTCACCAAGTACTGATTTATTGGAACCATAGTTTGTTTGGGGAATTCGT
TACACAGAAACCATGGCTACCGCTAATGGCGATAGACGTAAATCAGCACC
CGTTGCTGCACCCTGGAGCAAGCAGAAATTGACAGGTGCTTCTCACTGGG
ACAAAGTACGTGGTAATGGCAACAAAGTACGCTTGGTCAAAGGTAAATTC
TTATGTTTCGTGACAGGTGCTGGTAATGGTTTGGGACGTGCCATTGCTGG
TATGGCTTTCCAAGATCAAGGGATCCTACCAGATGCTATGTCAGGTTCCA
GGGTTATTTTGGTAGATAAGGATGAAGAAGCTTTGAAAGAAACATCTGGA
AAGAAAATGAGGCAATTCTTGAAGCATCGAAAAATTGAAGTCGAGTTAGA
AGTTGTTGATCTAGGAGACCTTGCTGCATCTAAAAAGCTGATTGAAAGAT
TGGATACAAAACAGGCGAAGGATTTTGAACATGTTATTTTTGTTAACAAT
GCATCGAGTTTAGCTGATCCTTCAAAAACCTTGATTGAGTTCGACGATCC
TTCAGATATGGCACAATATTGGAACATCAACATTACGTCACGAATGTTCA
TGACCACTCAGTTTTGTCGAGTCTTTCAACATTCAAAGCGAACCATAGTT
CATACAGTACGTTACGAGTCAGCCAAACCGAACCCGTATCTCGGTCCCAG
CTGTATGGCATCCAGCGCTATTGACACGTTCGCTCAGACGTTCGCTAAAG
AGAATCCAGCCATCCGTGTATTGAATTTTACAGCCGGAGCTCTAGATACG
AAACGTACTCACCGATTGATTGAAAGTTGCGGGAATAAAGACTTACAAGa
ggatttgaagaaaattatgGAGGAGAACAAACTAACAATACCATTGGAAG
CAGCGAAACGAATGATCAGATTCATAGAAGGAGACGAATTTACCAAGGGT
CAAATGCTCAGTATCCATGATAAAGATCTAGAACAGTAACCAGAAACAAA
TGACTCTCGATATAAATTTGAAAGACTCTTTAATAGACGAATGATCTGAA
ATAATCTTGAAGGGGAAAATAACATTTGAAGTGTTTGGAGTCTTTCAATA
GCATGCATGGTAGGAATATGAGGAGATGCAAGAGTTTACCAAGCAAGAGA
TATACAAAGAACCAAGCCAAtgaaattcgaaaaattggGGAGCAGCTGAT
AATATAAAAAGACAGTTAAAAGAACAGTCAAAGTGGTTAGTAGTGtagtg
aaaagaaattttgaagaataaatttcctaattttctACTAAAAGACCTAG
CCATTTGTGAATAATAAATTTTGTAACGTAATGGATTTGgaaattaaaat
attgaaaatttatacTGTTAGACTATTAGATTTATCCTTGGaaatatttg
tttatttatGGCATAACaacataaattttacagaaaaaaaatcacataaC
AGAAATCAAAAGTAC Coding sequence (CDS) from alignment at scaffold_253:897425..899089 >TCONS_00055625 ID=TCONS_00055625|Name=TCONS_00055625|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at scaffold_253:897425..899089 (Clytia hemisphaerica)
ATGGCTACCGCTAATGGCGATAGACGTAAATCAGCACCCGTTGCTGCACC
CTGGAGCAAGCAGAAATTGACAGGTGCTTCTCACTGGGACAAAGTACGTG
GTAATGGCAACAAAGTACGCTTGGTCAAAGGTAAATTCTTATGTTTCGTG
ACAGGTGCTGGTAATGGTTTGGGACGTGCCATTGCTGGTATGGCTTTCCA
AGATCAAGGGATCCTACCAGATGCTATGTCAGGTTCCAGGGTTATTTTGG
TAGATAAGGATGAAGAAGCTTTGAAAGAAACATCTGGAAAGAAAATGAGG
CAATTCTTGAAGCATCGAAAAATTGAAGTCGAGTTAGAAGTTGTTGATCT
AGGAGACCTTGCTGCATCTAAAAAGCTGATTGAAAGATTGGATACAAAAC
AGGCGAAGGATTTTGAACATGTTATTTTTGTTAACAATGCATCGAGTTTA
GCTGATCCTTCAAAAACCTTGATTGAGTTCGACGATCCTTCAGATATGGC
ACAATATTGGAACATCAACATTACGTCACGAATGTTCATGACCACTCAGT
TTTGTCGAGTCTTTCAACATTCAAAGCGAACCATAGTTCATACAGTACGT
TACGAGTCAGCCAAACCGAACCCGTATCTCGGTCCCAGCTGTATGGCATC
CAGCGCTATTGACACGTTCGCTCAGACGTTCGCTAAAGAGAATCCAGCCA
TCCGTGTATTGAATTTTACAGCCGGAGCTCTAGATACGAAACGTACTCAC
CGATTGATTGAAAGTTGCGGGAATAAAGACTTACAAGaggatttgaagaa
aattatgGAGGAGAACAAACTAACAATACCATTGGAAGCAGCGAAACGAA
TGATCAGATTCATAGAAGGAGACGAATTTACCAAGGGTCAAATGCTCAGT
ATCCATGATAAAGATCTAGAACAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055625-exon-scaffold_253-1491911889:897425..899089 | TCONS_00055625-exon-scaffold_253-1491911889:897425..899089 | Clytia hemisphaerica | exon |
| TCONS_00055625-exon-scaffold_253-1510915933:897425..899089 | TCONS_00055625-exon-scaffold_253-1510915933:897425..899089 | Clytia hemisphaerica | exon |
| TCONS_00055625-exon-scaffold_253-1575043694:897425..899089 | TCONS_00055625-exon-scaffold_253-1575043694:897425..899089 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:897425..899089 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00055625 vs. Swiss-Prot (Human)
Match: SPRE (Sepiapterin reductase OS=Homo sapiens GN=SPR PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.669e-28 Identity = 73/265 (27.55%), Postives = 131/265 (49.43%), Query Frame = -2
Query: 492 GKFLCFVTGAGNGLGRAIAGMAFQDQGILPDAMSGSRVILVDKDEEALKETSGKKMRQFLKHRKIEVELEVVDLGDLAASKKLIERL-DTKQAKDFEHVIFVNNASSLADPSKTLIEFDDPSDMAQYWNINITSRMFMTTQFCRVFQHS---KRTIVHTVRYESAKPNPYLGPSCMASSAIDTFAQTFAKENPAIRVLNFTAGALDTKRTHRLIESCGNKDLQEDLKKIMEENKLTIPLEAAKRMIRFIEGDEFTKGQMLSIHDK 1274
G+ +C +TGA G GR +A + GS ++L +++EAL++ + + R + V DLG A ++L+ L + + K + ++ +NNA SL D SK ++ D + + YW +N+TS + +T+ + F S RT+V+ + +P C +A D Q A E P +RVLN+ G LDT E+ + D+++ L+++ + KL +A++++ +E DEF G + +DK
Sbjct: 6 GRAVCLLTGASRGFGRTLAPLLASL------LSPGSVLVLSARNDEALRQLEAELGAERSGLRVVRVP---ADLGAEAGLQQLLGALRELPRPKGLQRLLLINNAGSLGDVSKGFVDLSDSTQVNNYWALNLTSMLCLTSSVLKAFPDSPGLNRTVVNISSLCALQPFKGWALYCAGKAARDMLFQVLALEEPNVRVLNYAPGPLDTDMQQLARETSVDPDMRKGLQELKAKGKLVDCKVSAQKLLSLLEKDEFKSGAHVDFYDK 261
The following BLAST results are available for this feature:
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