TCONS_00055629 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055629
Unique NameTCONS_00055629
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055629 ID=TCONS_00055629|Name=TCONS_00055629|organism=Clytia hemisphaerica|type=transcript|length=512bp
TAATTAAGAGTTACACTGAAGTTTCGGAGCCGACACTTTTATCTTCAGTC
AAACAAGTCTCTTCATACGACGGTGGTACGTCATTAAGTAGGTGTTCATC
GGCTCTCTCTACGTCAGTAGTGGTAAAATGTTTCTTAGGTTTAGAACGTT
GGTTGAAAGTCTTAGGCTTCTTGTTTCTGCTTTTCTGCTTTTTTTGATGA
CCATTTTCTGGTGTCTTTTCATCATTATTCTCCTTTCGTTTTATTTGACG
AGGTCTGTTATTGTCACCCGTTTGTCTTTTCCGCACCTTCATTTTGTTGG
GTACTCCAGGGACGTCTTGGAAGTAGAAACAGGTAGGATTAATACAACAA
CATACGCACACACCTAGTATTACTAATATGGCAACAGTGATACCAACAAT
GAATGAGACGTCTGATGCTACCATGATCTACCGACATCAATTAGAATACT
TTCAATCCATCCTTTTATAACGTCTGTATCTCATTTGCGTGTTTTCTTTC
ACTGTATTCTAA
Run BLAST on NCBI

protein sequence of TCONS_00055629-protein

>TCONS_00055629-protein ID=TCONS_00055629-protein|Name=TCONS_00055629-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MVASDVSFIVGITVAILVILGVCVCCCINPTCFYFQDVPGVPNKMKVRKR
QTGDNNRPRQIKRKENNDEKTPENGHQKKQKSRNKKPKTFNQRSKPKKHF
TTTDVERADEHLLNDVPPSYEETCLTEDKSVGSETSV
Run BLAST on NCBI

transcript from alignment at scaffold_253:927143..927654

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055629 ID=TCONS_00055629|Name=TCONS_00055629|organism=Clytia hemisphaerica|type=transcript|length=512bp|location=Sequence derived from alignment at scaffold_253:927143..927654 (Clytia hemisphaerica)
TTAGAATACAGTGAAAGAAAACACGCAAATGAGATACAGACGTTATAAAA
GGATGGATTGAAAGTATTCTAATTGATGTCGGTAGATCATGGTAGCATCA
GACGTCTCATTCATTGTTGGTATCACTGTTGCCATATTAGTAATACTAGG
TGTGTGCGTATGTTGTTGTATTAATCCTACCTGTTTCTACTTCCAAGACG
TCCCTGGAGTACCCAACAAAATGAAGGTGCGGAAAAGACAAACGGGTGAC
AATAACAGACCTCGTCAAATAAAACGAAAGGAGAATAATGATGAAAAGAC
ACCAGAAAATGGTCATCAAAAAAAGCAGAAAAGCAGAAACAAGAAGCCTA
AGACTTTCAACCAACGTTCTAAACCTAAGAAACATTTTACCACTACTGAC
GTAGAGAGAGCCGATGAACACCTACTTAATGACGTACCACCGTCGTATGA
AGAGACTTGTTTGACTGAAGATAAAAGTGTCGGCTCCGAAACTTCAGTGT
AACTCTTAATTA

Coding sequence (CDS) from alignment at scaffold_253:927143..927654

>TCONS_00055629 ID=TCONS_00055629|Name=TCONS_00055629|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_253:927143..927654 (Clytia hemisphaerica)
ATGGTAGCATCAGACGTCTCATTCATTGTTGGTATCACTGTTGCCATATT
AGTAATACTAGGTGTGTGCGTATGTTGTTGTATTAATCCTACCTGTTTCT
ACTTCCAAGACGTCCCTGGAGTACCCAACAAAATGAAGGTGCGGAAAAGA
CAAACGGGTGACAATAACAGACCTCGTCAAATAAAACGAAAGGAGAATAA
TGATGAAAAGACACCAGAAAATGGTCATCAAAAAAAGCAGAAAAGCAGAA
ACAAGAAGCCTAAGACTTTCAACCAACGTTCTAAACCTAAGAAACATTTT
ACCACTACTGACGTAGAGAGAGCCGATGAACACCTACTTAATGACGTACC
ACCGTCGTATGAAGAGACTTGTTTGACTGAAGATAAAAGTGTCGGCTCCG
AAACTTCAGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035001XLOC_035001Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055629-proteinTCONS_00055629-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055629-exon-scaffold_253-1491911889:927143..927654TCONS_00055629-exon-scaffold_253-1491911889:927143..927654Clytia hemisphaericaexon
TCONS_00055629-exon-scaffold_253-1510915933:927143..927654TCONS_00055629-exon-scaffold_253-1510915933:927143..927654Clytia hemisphaericaexon
TCONS_00055629-exon-scaffold_253-1575043694:927143..927654TCONS_00055629-exon-scaffold_253-1575043694:927143..927654Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:927143..927654 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.5632	20.2098	12.1967	9.59797	0.3158	0.24955	0.150535	0	0	0	0	0.0779801	4.43869	3.96266	0	0.142701	0.439489	0.630646	23.6488	20.8394	1.01887	1.82222	7.24956	7.20117	0.377137	0.673172	0.642205	0.171345	3.63885	2.38333
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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