TCONS_00055640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055640
Unique NameTCONS_00055640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055640 ID=TCONS_00055640|Name=TCONS_00055640|organism=Clytia hemisphaerica|type=transcript|length=677bp
ATTTTGAATAACTCGATACTGGTGAATGTAGAGCAGGACTTAATGCTTCT
AGTGAATGTGATAGTGGAGTTGGTGTTCCtgttgaatgtgcagcaggggt
tggtggttctggtgaatgtgcagccgAAGTTTGTGGTTTTGATGattgtg
cagcaggagttggtggttctggtgaatgtgatcatggagttggtggttct
ggtgaatgtgcataaGGAGTGGGTGATTCCGTTGAATTAGCAGCAGGgat
tggtggttctggtgaatataccGGTACTGTTGAATGCAACGTTGGAGTTT
GAGTTGCTGATGAAGTTGGAGTTACTGATGAATTTGATGGTggatttggt
ggttctggtgcATATGATTGTGTAGCAGGAGTTTCAGTTCCTTGTGGATG
TAATGGTGGAGCTTATAGTCCAAACCTATAAGCCAACACATTATTACTAA
TATTAGGTATCTGGCAAAATAAGTCAAACACTGACAGTTGTTAATGTCTT
TAGACAGCATTTATCACAATTCTAGCCCTATAGAAAACTGTCAAACACCT
GAATACAATATATTCGAAAATCATGATAATCCATCCATCCCAAGTCCTGA
TGTAGatctaccgggtgtgccacaaaaaggtttctctctttaaaactaat
tttctagaaatcttaaactttttaaag
Run BLAST on NCBI

transcript from alignment at scaffold_253:1057471..1058147

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055640 ID=TCONS_00055640|Name=TCONS_00055640|organism=Clytia hemisphaerica|type=transcript|length=677bp|location=Sequence derived from alignment at scaffold_253:1057471..1058147 (Clytia hemisphaerica)
ctttaaaaagtttaagatttctagaaaattagttttaaagagagaaacct
ttttgtggcacacccggtagatCTACATCAGGACTTGGGATGGATGGATT
ATCATGATTTTCGAATATATTGTATTCAGGTGTTTGACAGTTTTCTATAG
GGCTAGAATTGTGATAAATGCTGTCTAAAGACATTAACAACTGTCAGTGT
TTGACTTATTTTGCCAGATACCTAATATTAGTAATAATGTGTTGGCTTAT
AGGTTTGGACTATAAGCTCCACCATTACATCCACAAGGAACTGAAACTCC
TGCTACACAATCATATgcaccagaaccaccaaatccACCATCAAATTCAT
CAGTAACTCCAACTTCATCAGCAACTCAAACTCCAACGTTGCATTCAACA
GTACCggtatattcaccagaaccaccaatcCCTGCTGCTAATTCAACGGA
ATCACCCACTCCttatgcacattcaccagaaccaccaactccatgatcac
attcaccagaaccaccaactcctgctgcacaatCATCAAAACCACAAACT
TcggctgcacattcaccagaaccaccaacccctgctgcacattcaacaGG
AACACCAACTCCACTATCACATTCACTAGAAGCATTAAGTCCTGCTCTAC
ATTCACCAGTATCGAGTTATTCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035012XLOC_035012Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055640-exon-scaffold_253-1491911889:1057471..1058147TCONS_00055640-exon-scaffold_253-1491911889:1057471..1058147Clytia hemisphaericaexon
TCONS_00055640-exon-scaffold_253-1510915933:1057471..1058147TCONS_00055640-exon-scaffold_253-1510915933:1057471..1058147Clytia hemisphaericaexon
TCONS_00055640-exon-scaffold_253-1575043694:1057471..1058147TCONS_00055640-exon-scaffold_253-1575043694:1057471..1058147Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1057471..1058147 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.104838	0.380554	0.238181	0.53654	0.325348	0.853553	1.20329	0.39695	1.11821	0.620143	0.537086	1.29077	0.930557	0.305234	0.32014	0.161412	0.160651	0.381022	0.111471	0.197918	0	0	0.336203	1.47567	2.58648	0.147415	0	0.821117	0.366919
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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