TCONS_00055644 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055644
Unique NameTCONS_00055644
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055644 ID=TCONS_00055644|Name=TCONS_00055644|organism=Clytia hemisphaerica|type=transcript|length=357bp
CCCAGTGTCTTTAGGTGCTTCACCAACTGGGTATCTGGAGAATGCGTTTG
GGATGATGTTCTTCAGGCCAGGGATGTGAGTGATAGTGAATTTGAATGGA
AAGTTCTTTTCTTTGAGGTCCCTCAGACGAGTGTTTGGGATGTCATTCAG
AGATCTGTCGCTGAAGATTTTGAGAAGGGGTTTATGGTCGGTGTTTACAA
TCAGATTTGAGCAGCCAAGGGTGAAATATCTTGTCTTTTCCAGTGCATCA
GCGACCGCTAATGCTTCGCCGACTATGGGGTAGTAATTGGATTCAGATTT
GTTTGTGAATCTACTGCCAGTCAGTGTGATCTTCCATCCATCATGACAGC
AACCAGG
Run BLAST on NCBI

protein sequence of TCONS_00055644-protein

>TCONS_00055644-protein ID=TCONS_00055644-protein|Name=TCONS_00055644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
PGCCHDGWKITLTGSRFTNKSESNYYPIVGEALAVADALEKTRYFTLGCS
NLIVNTDHKPLLKIFSDRSLNDIPNTRLRDLKEKNFPFKFTITHIPGLKN
IIPNAFSRYPVGEAPKDTG
Run BLAST on NCBI

transcript from alignment at scaffold_253:1182129..1182485

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055644 ID=TCONS_00055644|Name=TCONS_00055644|organism=Clytia hemisphaerica|type=transcript|length=357bp|location=Sequence derived from alignment at scaffold_253:1182129..1182485 (Clytia hemisphaerica)
CCTGGTTGCTGTCATGATGGATGGAAGATCACACTGACTGGCAGTAGATT
CACAAACAAATCTGAATCCAATTACTACCCCATAGTCGGCGAAGCATTAG
CGGTCGCTGATGCACTGGAAAAGACAAGATATTTCACCCTTGGCTGCTCA
AATCTGATTGTAAACACCGACCATAAACCCCTTCTCAAAATCTTCAGCGA
CAGATCTCTGAATGACATCCCAAACACTCGTCTGAGGGACCTCAAAGAAA
AGAACTTTCCATTCAAATTCACTATCACTCACATCCCTGGCCTGAAGAAC
ATCATCCCAAACGCATTCTCCAGATACCCAGTTGGTGAAGCACCTAAAGA
CACTGGG

Coding sequence (CDS) from alignment at scaffold_253:1182129..1182485

>TCONS_00055644 ID=TCONS_00055644|Name=TCONS_00055644|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_253:1182129..1182485 (Clytia hemisphaerica)
CCTGGTTGCTGTCATGATGGATGGAAGATCACACTGACTGGCAGTAGATT
CACAAACAAATCTGAATCCAATTACTACCCCATAGTCGGCGAAGCATTAG
CGGTCGCTGATGCACTGGAAAAGACAAGATATTTCACCCTTGGCTGCTCA
AATCTGATTGTAAACACCGACCATAAACCCCTTCTCAAAATCTTCAGCGA
CAGATCTCTGAATGACATCCCAAACACTCGTCTGAGGGACCTCAAAGAAA
AGAACTTTCCATTCAAATTCACTATCACTCACATCCCTGGCCTGAAGAAC
ATCATCCCAAACGCATTCTCCAGATACCCAGTTGGTGAAGCACCTAAAGA
CACTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035016XLOC_035016Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055644-exon-scaffold_253-1491911889:1182129..1182485TCONS_00055644-exon-scaffold_253-1491911889:1182129..1182485Clytia hemisphaericaexon
TCONS_00055644-exon-scaffold_253-1510915933:1182129..1182485TCONS_00055644-exon-scaffold_253-1510915933:1182129..1182485Clytia hemisphaericaexon
TCONS_00055644-exon-scaffold_253-1575043694:1182129..1182485TCONS_00055644-exon-scaffold_253-1575043694:1182129..1182485Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055644-proteinTCONS_00055644-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1182129..1182485 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.51325	0.798146	2.7847	1.46528	0	0.708866	1.90326	1.14706	0.839425	1.14042	1.21431	0.921478	1.19156	0.993396	0.655507	0.484537	0.179953	0.368891	0.0426224	0	1.34509	0.339147	0	0.446354	1.6933	0.229697	0.328696	0	0	0.770437
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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