TCONS_00055645 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055645
Unique NameTCONS_00055645
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1053

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055645 ID=TCONS_00055645|Name=TCONS_00055645|organism=Clytia hemisphaerica|type=transcript|length=1053bp
CGTCGGAGTCGGAGGCGGAGTTTGTACGGGCAAGTCATGAACAATGGAAT
CCCTCGGAGGATTGACATTGGGTGTCAATGGGGTGTTCCCTGGAGTGGAT
CGAGGTGTTTCCATTGGGCCATCAAGTTTTGCTGGTTGGATGTATTTGAA
GTCATGAATTGGATGGCGGTGTGCAGTCTTCTGGACAGCTGGGACGAATT
TGCGTAATAACCGTCGATTGCGATTTGTTGGCAGACCAGAGCCGTCCATT
CGAACTGTGTATTTGTCAAATTGATGAACTTCAACAACTTTGCCTGTTTT
GTCCCATTTGTGTGGGTGGGGTCCACAACATTTGTTCTGGACCCTAACAT
GGTCACCAATTTTAAGTGGCGGGAGTTGTTTGGTGTGTTTCACAGGTTTT
CCGAAGATGCACATCGCAGGTGAGAGACCGGTTGATGGATCTGGGCAGTT
GCAATATTGTAGTAGTGCTCTCTGTAGTTTATCTGTGTCCAAACTACCGT
TGTGGCCAGTGTTGTCAGTGATCAGTCATTTTGCTGTCTTGACACCAATT
TCAGCTCTGCAATTCGAATGTGGGAAAGCTACCGAAGAAAATCGTTGATG
GACTCCCCAGTTCTTCAAGAATGTGGTGGGGGCGTTTGAATTCTGGTCCT
TCATCTGATGCTAGCTCCTCGGGGATACCAAAAGTGGAGAACTGTTTGCG
AAGACAATCTATCAGGCCTTATGATCCTTCTTGAGCGCGGTCAATGGTTG
GCCAATTTGAGTATCTGTCTACTGTTATCAGGTAATGTTGGCCTTCATAC
TGAAAATAGTCGGCACAGATAAGTTGAATTGGATATTCTGGAGATGGTGT
TGGATATGGAGGTGAGCTTGGTTGCGATGGAGCGTTTCGGTTGCAGGCAT
TACAATTGTCACGTTGTTGTTGAATATCTTTAGTGATACCTGGCCAGAAT
ACTGATGACTTAGCACGGGATAGCATCATGCCAGTGCTTTAGTGGGCTGC
ATGAAGGGAATCCAGGGTCTGGGCCCTAAGTGACGGTGGGATGATAATCC
TGT
Run BLAST on NCBI

protein sequence of TCONS_00055645-protein

>TCONS_00055645-protein ID=TCONS_00055645-protein|Name=TCONS_00055645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MCIFGKPVKHTKQLPPLKIGDHVRVQNKCCGPHPHKWDKTGKVVEVHQFD
KYTVRMDGSGLPTNRNRRLLRKFVPAVQKTAHRHPIHDFKYIQPAKLDGP
METPRSTPGNTPLTPNVNPPRDSIVHDLPVQTPPPTPT
Run BLAST on NCBI

transcript from alignment at scaffold_253:1182837..1183889

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055645 ID=TCONS_00055645|Name=TCONS_00055645|organism=Clytia hemisphaerica|type=transcript|length=1053bp|location=Sequence derived from alignment at scaffold_253:1182837..1183889 (Clytia hemisphaerica)
ACAGGATTATCATCCCACCGTCACTTAGGGCCCAGACCCTGGATTCCCTT
CATGCAGCCCACTAAAGCACTGGCATGATGCTATCCCGTGCTAAGTCATC
AGTATTCTGGCCAGGTATCACTAAAGATATTCAACAACAACGTGACAATT
GTAATGCCTGCAACCGAAACGCTCCATCGCAACCAAGCTCACCTCCATAT
CCAACACCATCTCCAGAATATCCAATTCAACTTATCTGTGCCGACTATTT
TCAGTATGAAGGCCAACATTACCTGATAACAGTAGACAGATACTCAAATT
GGCCAACCATTGACCGCGCTCAAGAAGGATCATAAGGCCTGATAGATTGT
CTTCGCAAACAGTTCTCCACTTTTGGTATCCCCGAGGAGCTAGCATCAGA
TGAAGGACCAGAATTCAAACGCCCCCACCACATTCTTGAAGAACTGGGGA
GTCCATCAACGATTTTCTTCGGTAGCTTTCCCACATTCGAATTGCAGAGC
TGAAATTGGTGTCAAGACAGCAAAATGACTGATCACTGACAACACTGGCC
ACAACGGTAGTTTGGACACAGATAAACTACAGAGAGCACTACTACAATAT
TGCAACTGCCCAGATCCATCAACCGGTCTCTCACCTGCGATGTGCATCTT
CGGAAAACCTGTGAAACACACCAAACAACTCCCGCCACTTAAAATTGGTG
ACCATGTTAGGGTCCAGAACAAATGTTGTGGACCCCACCCACACAAATGG
GACAAAACAGGCAAAGTTGTTGAAGTTCATCAATTTGACAAATACACAGT
TCGAATGGACGGCTCTGGTCTGCCAACAAATCGCAATCGACGGTTATTAC
GCAAATTCGTCCCAGCTGTCCAGAAGACTGCACACCGCCATCCAATTCAT
GACTTCAAATACATCCAACCAGCAAAACTTGATGGCCCAATGGAAACACC
TCGATCCACTCCAGGGAACACCCCATTGACACCCAATGTCAATCCTCCGA
GGGATTCCATTGTTCATGACTTGCCCGTACAAACTCCGCCTCCGACTCCG
ACG

Coding sequence (CDS) from alignment at scaffold_253:1182837..1183889

>TCONS_00055645 ID=TCONS_00055645|Name=TCONS_00055645|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_253:1182837..1183889 (Clytia hemisphaerica)
ATGTGCATCTTCGGAAAACCTGTGAAACACACCAAACAACTCCCGCCACT
TAAAATTGGTGACCATGTTAGGGTCCAGAACAAATGTTGTGGACCCCACC
CACACAAATGGGACAAAACAGGCAAAGTTGTTGAAGTTCATCAATTTGAC
AAATACACAGTTCGAATGGACGGCTCTGGTCTGCCAACAAATCGCAATCG
ACGGTTATTACGCAAATTCGTCCCAGCTGTCCAGAAGACTGCACACCGCC
ATCCAATTCATGACTTCAAATACATCCAACCAGCAAAACTTGATGGCCCA
ATGGAAACACCTCGATCCACTCCAGGGAACACCCCATTGACACCCAATGT
CAATCCTCCGAGGGATTCCATTGTTCATGACTTGCCCGTACAAACTCCGC
CTCCGACTCCGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035017XLOC_035017Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055645-exon-scaffold_253-1491911889:1182837..1183889TCONS_00055645-exon-scaffold_253-1491911889:1182837..1183889Clytia hemisphaericaexon
TCONS_00055645-exon-scaffold_253-1510915933:1182837..1183889TCONS_00055645-exon-scaffold_253-1510915933:1182837..1183889Clytia hemisphaericaexon
TCONS_00055645-exon-scaffold_253-1575043694:1182837..1183889TCONS_00055645-exon-scaffold_253-1575043694:1182837..1183889Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055645-proteinTCONS_00055645-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1182837..1183889 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.584555	0.825113	1.00924	0.347877	0.40501	0.151808	0.228559	0.35416	0.380385	0.304495	0.371022	0.280712	0.389575	0.294389	0.136059	0.0794025	0.248854	0.245628	0.134053	0.357905	0.22154	0.25663	0.0620992	0.14505	0.969709	0.615873	0.172916	0	0.281569	0.255152
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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