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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055648 ID=TCONS_00055648|Name=TCONS_00055648|organism=Clytia hemisphaerica|type=transcript|length=549bp
aAACAGATAAACCATGTACATTATTCATTGAGATCCGAAAAAGACACCAT
TTCTAACGTCTTCACCATCAAGATTTTTGGATTCAATTGGTGCATCCAAG
CGATCGAAACAATCCAAAATTGGTTTGTCCAAGCGAGCGAAACAGTCCAC
AAATGAGATCAAAGAAAGCAATGTtagtgttttgatttttccaatGACCT
ACTTTCTCTCCCTATTTCTAAGCAATTGTATACTAAGTTAATTTTGCGGA
ACTAAATTTTGCATTAGACatcaaaaaacttgaaaattagtCCCACAAAA
ATTATGTTATTACACTCATATAACTAGTAATGTTATTAACATGAATGGCT
TGCCTTCCGTAATTACAGCCATTTAAAGAATTAGAGCTGAGGTTATTTTC
AAAAACCCTGCCTTTTGTGTTAACTGCGTCAGGCTTTTTACCCGTGTTAA
ATACTTAGTATAGGTATAATAAGGTAGTTAGTTCCCTTAGGGTAAACAGT
GTGGATCTTTTTCATAGTGAGAAAACCTAAGTAGGCAGTGGATTCCAAG Run BLAST on NCBI transcript from alignment at scaffold_254:99..1240- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055648 ID=TCONS_00055648|Name=TCONS_00055648|organism=Clytia hemisphaerica|type=transcript|length=1142bp|location=Sequence derived from alignment at scaffold_254:99..1240- (Clytia hemisphaerica)
AAACAGATAAACCATGTACATTATTCATTGAGGTATACTACTTTACTACT
TATATACTACTTTTAGAATCTTAAGTTAACAAAAAGGCACTTTAAATTTT
GGAGGTTAAATAGGCAGAGGTGCCAGAAGTACTGTATGTTGTATGTGTTA
TGGTACTTACAAGTGTAGCTACATATAGTTTTTGAACCGTTTACTGCACT
CATTACTCATATCATAACCCAGACAACAGCCTTAAGGTCTATTTTTTTTT
AATTTCAAGTTAATTTTTGTTTTAAGTCTACTTCATANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTTATGTCGTCA
GTTTGTATAGTCTTGCTTTTATGGAACTCAATATACACCGTTAGCAGTGT
TATTAACTCTTAAATTGGAAAAAGACATTCTCTATTTTTTCTTAGATCCG
AAAAAGACACCATTTCTAACGGTAAGATTATACTTTTATCATGTTAACTT
TTTCTCTTCCAGTATTTCTTTTTTTATCCATCTGATCAAGACCATTATTT
ATGATTTAATTAGGAAGAGCTAAAAATAGTAAATTTTTTTAAACATTCTA
GTCTTCACCATCAAGATTTTTGGATTCAATTGGTGCATCCAAGCGATCGA
AACAATCCAAAATTGGTTTGTCCAAGCGAGCGAAACAGTCCACAAATGAG
ATCAAAGAAAGCAATGTTAGTGTTTTGATTTTTCCAATGACCTACTTTCT
CTCCCTATTTCTAAGCAATTGTATACTAAGTTAATTTTGCGGAACTAAAT
TTTGCATTAGACATCAAAAAACTTGAAAATTAGTCCCACAAAAATTATGT
TATTACACTCATATAACTAGTAATGTTATTAACATGAATGGCTTGCCTTC
CGTAATTACAGCCATTTAAAGAATTAGAGCTGAGGTTATTTTCAAAAACC
CTGCCTTTTGTGTTAACTGCGTCAGGCTTTTTACCCGTGTTAAATACTTA
GTATAGGTATAATAAGGTAGTTAGTTCCCTTAGGGTAAACAGTGTGGATC
TTTTTCATAGTGAGAAAACCTAAGTAGGCAGTGGATTCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055648-exon-scaffold_254-1575043694:1209..1240 | TCONS_00055648-exon-scaffold_254-1575043694:1209..1240 | Clytia hemisphaerica | exon |
| TCONS_00055648-exon-scaffold_254-1575043694:720..745 | TCONS_00055648-exon-scaffold_254-1575043694:720..745 | Clytia hemisphaerica | exon |
| TCONS_00055648-exon-scaffold_254-1575043694:99..589 | TCONS_00055648-exon-scaffold_254-1575043694:99..589 | Clytia hemisphaerica | exon |
| TCONS_00055648-exon-scaffold_254-1510915933:1209..1240 | TCONS_00055648-exon-scaffold_254-1510915933:1209..1240 | Clytia hemisphaerica | exon |
| TCONS_00055648-exon-scaffold_254-1510915933:720..745 | TCONS_00055648-exon-scaffold_254-1510915933:720..745 | Clytia hemisphaerica | exon |
| TCONS_00055648-exon-scaffold_254-1510915933:99..589 | TCONS_00055648-exon-scaffold_254-1510915933:99..589 | Clytia hemisphaerica | exon |
| TCONS_00055648-exon-scaffold_254-1491911889:1209..1240 | TCONS_00055648-exon-scaffold_254-1491911889:1209..1240 | Clytia hemisphaerica | exon |
| TCONS_00055648-exon-scaffold_254-1491911889:720..745 | TCONS_00055648-exon-scaffold_254-1491911889:720..745 | Clytia hemisphaerica | exon |
| TCONS_00055648-exon-scaffold_254-1491911889:99..589 | TCONS_00055648-exon-scaffold_254-1491911889:99..589 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_254 | supercontig | scaffold_254:99..1240 - |
Blast
The following BLAST results are available for this feature:
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