TCONS_00055658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055658
Unique NameTCONS_00055658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055658 ID=TCONS_00055658|Name=TCONS_00055658|organism=Clytia hemisphaerica|type=transcript|length=301bp
NNTGTGAATTGGTGACCTTGCCTTCCTCGGTTATCTTTCGAGATTTCTGT
ACACTTTGGAGGGCAATCACGACCACTGATTCTCGAAATTCACTTTCCAA
ACGGCCACGTAGTGTTTCCGAGTAGGTCTTTGTGAACAGCTCTTGTGGCA
CTTCATCAAAAAGGAAATGTATTTTTCGATGTTTGTGTTTGTTCTTTAAG
AGAAGCATGACGTCAGCAATATTTTTGGATGGTAATGAGGAACAGTTGTA
AAAATCGGTGACATTCCTTCTTTCACCAACAGCTTCAGAAAGCGATAATG
A
Run BLAST on NCBI

protein sequence of TCONS_00055658-protein

>TCONS_00055658-protein ID=TCONS_00055658-protein|Name=TCONS_00055658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
SLSLSEAVGERRNVTDFYNCSSLPSKNIADVMLLLKNKHKHRKIHFLFDE
VPQELFTKTYSETLRGRLESEFRESVVVIALQSVQKSRKITEEGKVTNSX
Run BLAST on NCBI

transcript from alignment at scaffold_255:36120..36420

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055658 ID=TCONS_00055658|Name=TCONS_00055658|organism=Clytia hemisphaerica|type=transcript|length=301bp|location=Sequence derived from alignment at scaffold_255:36120..36420 (Clytia hemisphaerica)
TCATTATCGCTTTCTGAAGCTGTTGGTGAAAGAAGGAATGTCACCGATTT
TTACAACTGTTCCTCATTACCATCCAAAAATATTGCTGACGTCATGCTTC
TCTTAAAGAACAAACACAAACATCGAAAAATACATTTCCTTTTTGATGAA
GTGCCACAAGAGCTGTTCACAAAGACCTACTCGGAAACACTACGTGGCCG
TTTGGAAAGTGAATTTCGAGAATCAGTGGTCGTGATTGCCCTCCAAAGTG
TACAGAAATCTCGAAAGATAACCGAGGAAGGCAAGGTCACCAATTCACAN
N

Coding sequence (CDS) from alignment at scaffold_255:36120..36420

>TCONS_00055658 ID=TCONS_00055658|Name=TCONS_00055658|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_255:36120..36420 (Clytia hemisphaerica)
TCATTATCGCTTTCTGAAGCTGTTGGTGAAAGAAGGAATGTCACCGATTT
TTACAACTGTTCCTCATTACCATCCAAAAATATTGCTGACGTCATGCTTC
TCTTAAAGAACAAACACAAACATCGAAAAATACATTTCCTTTTTGATGAA
GTGCCACAAGAGCTGTTCACAAAGACCTACTCGGAAACACTACGTGGCCG
TTTGGAAAGTGAATTTCGAGAATCAGTGGTCGTGATTGCCCTCCAAAGTG
TACAGAAATCTCGAAAGATAACCGAGGAAGGCAAGGTCACCAATTCACAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035028XLOC_035028Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055658-exon-scaffold_255-1491911889:36120..36420TCONS_00055658-exon-scaffold_255-1491911889:36120..36420Clytia hemisphaericaexon
TCONS_00055658-exon-scaffold_255-1510915933:36120..36420TCONS_00055658-exon-scaffold_255-1510915933:36120..36420Clytia hemisphaericaexon
TCONS_00055658-exon-scaffold_255-1575043694:36120..36420TCONS_00055658-exon-scaffold_255-1575043694:36120..36420Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055658-proteinTCONS_00055658-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_255supercontigscaffold_255:36120..36420 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.366441	2.48097	0	0	4.41445	3.92674	6.46958	7.37924	3.95498	2.89466	9.29638	3.29216	8.73889	12.1906	5.86411	10.0535	4.53779	6.93154	7.51052	14.0054	5.64107	7.83483	5.76878	5.24821	10.2377	10.8475	13.2753	13.9085	11.1202	8.95547
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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