TCONS_00055663 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055663
Unique NameTCONS_00055663
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length969

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055663 ID=TCONS_00055663|Name=TCONS_00055663|organism=Clytia hemisphaerica|type=transcript|length=969bp
TGTGTATTCTTTTATGTTGCTTTAAAGAACCAtttgttttaaagcattta
ccacattcttcacacTTGAATGACTTTTCTTCAGTGTGTATTTTTTTGTG
TCTCTTTAAAGAACCCtttgttttaaagcatttaccacattcttcacatt
tGAATGGCTTTTCTTTGGTGTGTATTCTTTTATGTTGCTTTAAAGAACCC
tttgttttaaagcatttaccacattcttcacatttGAATGGCTTTTCTTC
GGTATGTAATTTAATATGTTCCTTTAAAGAAGTCtttgttttaaagcatt
taccacattcctCACATTTGAATGGCTTTTCTTCGGTATGTAATTTAATA
TGTTCCTTTAAAGAAGTCTTTGTTTTAAAGTATTTACCGCAGTTTTCACA
TTTAAATGGTCTAATGCTACTATGCACTATAAGATGCTGTGTTAGAACAT
CTGATCGGgaaaaacatttaccacattcttgacacttGAAAGGTCTTTCG
CCAGTATGAATTCTACGATGTTTCTTAAAATCACAGTTGAATTTAAAGGA
TTTACCACACTCTTTGCATTTAAAACCTTTGCCACGTTCTTTTGTGACAA
GACTATTTTTCCTTGTCTTGGTTATAGGATTTTCTGCTTGTAAATTAGTG
GCATATTTTGTTAAGTTCGTTGGTGGAATTATTTCATCGAGTTCaatttt
aatatcaaaagaGTCTGATTGATGCTGAGAATCGGATAACTCTTCGACAT
gggccaaaaaattattttcctcttCAATCTTAATCTTCAATAGTATATCA
TCATTTATGTTTGTATCAACAAATTCATGTTTTTTCTCtccaaataaatc
aaaattagcATCCTCTGGACCAATCTCGAGTGTAACCGAATTCATCTCAT
TTTTGTCACGTTCCATTTCGTTGGAAAACTCGTCGATTTCACTTTTCATA
TTAATAGTCTTTATTTTcc
Run BLAST on NCBI

transcript from alignment at scaffold_256:323..1291+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055663 ID=TCONS_00055663|Name=TCONS_00055663|organism=Clytia hemisphaerica|type=transcript|length=969bp|location=Sequence derived from alignment at scaffold_256:323..1291+ (Clytia hemisphaerica)
TGTGTATTCTTTTATGTTGCTTTAAAGAACCAtttgttttaaagcattta ccacattcttcacacTTGAATGACTTTTCTTCAGTGTGTATTTTTTTGTG TCTCTTTAAAGAACCCtttgttttaaagcatttaccacattcttcacatt tGAATGGCTTTTCTTTGGTGTGTATTCTTTTATGTTGCTTTAAAGAACCC tttgttttaaagcatttaccacattcttcacatttGAATGGCTTTTCTTC GGTATGTAATTTAATATGTTCCTTTAAAGAAGTCtttgttttaaagcatt taccacattcctCACATTTGAATGGCTTTTCTTCGGTATGTAATTTAATA TGTTCCTTTAAAGAAGTCTTTGTTTTAAAGTATTTACCGCAGTTTTCACA TTTAAATGGTCTAATGCTACTATGCACTATAAGATGCTGTGTTAGAACAT CTGATCGGgaaaaacatttaccacattcttgacacttGAAAGGTCTTTCG CCAGTATGAATTCTACGATGTTTCTTAAAATCACAGTTGAATTTAAAGGA TTTACCACACTCTTTGCATTTAAAACCTTTGCCACGTTCTTTTGTGACAA GACTATTTTTCCTTGTCTTGGTTATAGGATTTTCTGCTTGTAAATTAGTG GCATATTTTGTTAAGTTCGTTGGTGGAATTATTTCATCGAGTTCaatttt aatatcaaaagaGTCTGATTGATGCTGAGAATCGGATAACTCTTCGACAT gggccaaaaaattattttcctcttCAATCTTAATCTTCAATAGTATATCA TCATTTATGTTTGTATCAACAAATTCATGTTTTTTCTCtccaaataaatc aaaattagcATCCTCTGGACCAATCTCGAGTGTAACCGAATTCATCTCAT TTTTGTCACGTTCCATTTCGTTGGAAAACTCGTCGATTTCACTTTTCATA TTAATAGTCTTTATTTTcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035032XLOC_035032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055663-exon-scaffold_256-1491911889:323..1291TCONS_00055663-exon-scaffold_256-1491911889:323..1291Clytia hemisphaericaexon
TCONS_00055663-exon-scaffold_256-1510915933:323..1291TCONS_00055663-exon-scaffold_256-1510915933:323..1291Clytia hemisphaericaexon
TCONS_00055663-exon-scaffold_256-1575043694:323..1291TCONS_00055663-exon-scaffold_256-1575043694:323..1291Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:323..1291 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.37072 1.43325 0.918378 0.602309 0.299041 0 0.120032 0.168559 0.15735 0 0.122135 0 0 0.0967254 0.0533617 0.22757 0.14778 0.281206 0.0646839 0 0.141273 0.276355 1.22239 0.578617 0.255954 0.513467 0.215478 0 0.682253 0.330019
Blast
BLAST of TCONS_00055663 vs. Swiss-Prot (Human)
Match: ZN273 (Zinc finger protein 273 OS=Homo sapiens GN=ZNF273 PE=1 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 3.740e-69
Identity = 105/193 (54.40%), Postives = 144/193 (74.61%), Query Frame = -3
Query:    2 KGFKCKECGKSFKFNCDFKKHRRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKRHKKIHTEEKSFKCEECGKCFKTNGSLKQHKRIH 580
            K +KC ECGK+F ++    KH+RIHTGE+P+KC+ECGK F++S  LT+H IVH+  +P+KCE CGK FK  T+L +H +++T+EKP+KCEECGK F   ++L +H  +HT  KP+KCEECG  F+   +L +HKR+HT EKP+KC ECGK F    +L +HK+IHT EK +KCEECGK F  + +L +HK+IH
Sbjct:  344 KPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNRSSNLTRHKKIH 536          

HSP 2 Score: 213.386 bits (542), Expect = 1.867e-63
Identity = 101/193 (52.33%), Postives = 134/193 (69.43%), Query Frame = -3
Query:    2 KGFKCKECGKSFKFNCDFKKHRRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKRHKKIHTEEKSFKCEECGKCFKTNGSLKQHKRIH 580
            K + C+ECGK F       KH+ IHTGE+P+KC ECGK F+ S  LT+H  +H+  +P+KCE CGK F   ++L  H  +HT EKP+KCEECGK FK  T+L +H +++T+EKP+KCEECGK F    +L +HK IHT  KP+KCEECG  F+   +L  HK++HT EK +KC ECGK F  + +L +HKRIH
Sbjct:  316 KPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVHTGEKPYKCNECGKAFNWSSTLTKHKRIH 508          

HSP 3 Score: 212.616 bits (540), Expect = 3.515e-63
Identity = 107/223 (47.98%), Postives = 150/223 (67.26%), Query Frame = -3
Query:    2 TNLTKYATNLQAENPITKTRKNSLVTKERGKGFKCKECGKSFKFNCDFKKHRRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKRHKKIHTEEKSFKCEECGKCFKTNGSLKQHKRIH 670
             N  K  T  +A N  +   K+ ++  E    +KC+ECGK+F  +    KH++IHT E+P+KC++CGK FS   VLT+H I+H+  +P+ CE CGK F   ++L +H  +HT EKP+KC ECGK F   ++L +H ++HT EKP+KCEECGK F    +L +HK +HT EKP+KCEECGK FK   +L +HK+I+T+EK +KCEECGK F    +L +HK IH
Sbjct:  231 VNFYKCKTCGKAFNQFSNLTKHKIIHPEVNP-YKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIH 452          

HSP 4 Score: 211.846 bits (538), Expect = 6.897e-63
Identity = 105/208 (50.48%), Postives = 142/208 (68.27%), Query Frame = -3
Query:    2 ITKTRKNSLVTKERGKGFKCKECGKSFKFNCDFKKHRRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKRHKKIHTEEKSFKCEECGKCFKTNGSLKQHKRIH 625
            +T T+   + T+E  K +KC++CGK F       KH+ IHTG +P+ C+ECGK FS    LT+H I+H+  +P+KC  CGK F   ++L +H ++HT EKP+KCEECGK F   ++L  H  +HT EKP+KCEECGK FK   +L +HKRI+TKEKP+KCEECGK F    +L +HK IHT  K +KCEECG  F+   +L +HKR+H
Sbjct:  275 LTLTKHKKIHTEE--KPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVH 480          

HSP 5 Score: 202.601 bits (514), Expect = 1.707e-59
Identity = 101/198 (51.01%), Postives = 134/198 (67.68%), Query Frame = -3
Query:    2 TKERGKGFKCKECGKSFKFNCDFKKHRRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKRHKKIHTEEKSFKCEECGKCFKTNGSLKQHKRIH 595
            T  R   +KCK CGK+F    +  KH+ IH    P+KC+ECGK F++S  LT+H  +H+  +P+KCE+CGK F   + L +H  +HT  KP+ CEECGK F   ++L +H  +HT EKP+KC ECGK F    +L +HKRIHT EKP+KCEECGK F    +L RHK +HT EK +KCEECGK FK + +L +HKRI+
Sbjct:  227 TATRVNFYKCKTCGKAFNQFSNLTKHKIIHPEVNPYKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTKHKRIY 424          

HSP 6 Score: 192.971 bits (489), Expect = 8.347e-56
Identity = 100/205 (48.78%), Postives = 133/205 (64.88%), Query Frame = -3
Query:    2 NSLVTKERGKG---FKCKECGKSFKFNCDFKKHRRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKRHKKIHTEEKSFKCEECGKCFKTNGSLKQHKRIH 607
            NS + K+R  G   FKCKECGKS        +H++  T    +KC+ CGK F++   LT+H I+H  + P+KCE CGK F    +L +H K+HTEEKP+KCE+CGK F   + L +H  +HT  KP+ CEECGK F    +L +HK IHT EKP+KC ECGK F    +L +HK+IHT EK +KCEECGK F  + +L +HK +H
Sbjct:  192 NSNIHKKRQTGKKPFKCKECGKSCCILSQLTQHKKTATRVNFYKCKTCGKAFNQFSNLTKHKIIHPEVNPYKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVH 396          

HSP 7 Score: 179.104 bits (453), Expect = 7.279e-51
Identity = 90/184 (48.91%), Postives = 124/184 (67.39%), Query Frame = -3
Query:   71 TKTRKNSLVTKERGKGFKCKECGKSFKFNCDFKKHRRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKRHKKIHTEEKS 622
            T TR   + T E  K +KC+ECGK+FK +    KH+RI+T E+P+KC+ECGK FS    LT+H I+H+  +P+KCE CG  F+  ++L EH ++HT EKP+KC ECGK F   ++L +H ++HT EKP+KCEECGK F    +L +HK+IHT EKP+K + C   F    +  RHK+ H  EKS
Sbjct:  388 TLTRHKIVHTGE--KPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNRSSNLTRHKKIHTGEKPYKPKRCDSAFDNTPNFSRHKRNHMGEKS 569          

HSP 8 Score: 170.629 bits (431), Expect = 8.362e-48
Identity = 92/202 (45.54%), Postives = 124/202 (61.39%), Query Frame = -3
Query:    2 NSLVTKERGKGFKCKECGKSFKFNCDFKKHRRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKRHKKIHTEEKSFKCEECGKCFKTNGSLKQHKRIH 607
            N  +T  + K F+C +  K      +   H++  TG++PFKC+ECGK       LTQH    + +  +KC+ CGK F   ++L +H  +H E  P+KCEECGK F    +L +H K+HTEEKP+KCE+CGK F     L +HK IHT  KP+ CEECGK F    +L +HK IHT EK +KC ECGK F  + +L +HKRIH
Sbjct:  167 NQCLTTTQSKIFQCDKYVKVLHKFSNSNIHKKRQTGKKPFKCKECGKSCCILSQLTQHKKTATRVNFYKCKTCGKAFNQFSNLTKHKIIHPEVNPYKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIH 368          
The following BLAST results are available for this feature:
BLAST of TCONS_00055663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2733.740e-6954.40Zinc finger protein 273 OS=Homo sapiens GN=ZNF273 ... [more]
back to top