Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055663 ID=TCONS_00055663|Name=TCONS_00055663|organism=Clytia hemisphaerica|type=transcript|length=969bpRun BLAST on NCBI transcript from alignment at scaffold_256:323..1291+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055663 ID=TCONS_00055663|Name=TCONS_00055663|organism=Clytia hemisphaerica|type=transcript|length=969bp|location=Sequence derived from alignment at scaffold_256:323..1291+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00055663 vs. Swiss-Prot (Human)
Match: ZN273 (Zinc finger protein 273 OS=Homo sapiens GN=ZNF273 PE=1 SV=3) HSP 1 Score: 228.409 bits (581), Expect = 3.740e-69 Identity = 105/193 (54.40%), Postives = 144/193 (74.61%), Query Frame = -3 Query: 2 KGFKCKECGKSFKFNCDFKKHRRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKRHKKIHTEEKSFKCEECGKCFKTNGSLKQHKRIH 580 K +KC ECGK+F ++ KH+RIHTGE+P+KC+ECGK F++S LT+H IVH+ +P+KCE CGK FK T+L +H +++T+EKP+KCEECGK F ++L +H +HT KP+KCEECG F+ +L +HKR+HT EKP+KC ECGK F +L +HK+IHT EK +KCEECGK F + +L +HK+IH Sbjct: 344 KPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNRSSNLTRHKKIH 536 HSP 2 Score: 213.386 bits (542), Expect = 1.867e-63 Identity = 101/193 (52.33%), Postives = 134/193 (69.43%), Query Frame = -3 Query: 2 KGFKCKECGKSFKFNCDFKKHRRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKRHKKIHTEEKSFKCEECGKCFKTNGSLKQHKRIH 580 K + C+ECGK F KH+ IHTGE+P+KC ECGK F+ S LT+H +H+ +P+KCE CGK F ++L H +HT EKP+KCEECGK FK T+L +H +++T+EKP+KCEECGK F +L +HK IHT KP+KCEECG F+ +L HK++HT EK +KC ECGK F + +L +HKRIH Sbjct: 316 KPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVHTGEKPYKCNECGKAFNWSSTLTKHKRIH 508 HSP 3 Score: 212.616 bits (540), Expect = 3.515e-63 Identity = 107/223 (47.98%), Postives = 150/223 (67.26%), Query Frame = -3 Query: 2 TNLTKYATNLQAENPITKTRKNSLVTKERGKGFKCKECGKSFKFNCDFKKHRRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKRHKKIHTEEKSFKCEECGKCFKTNGSLKQHKRIH 670 N K T +A N + K+ ++ E +KC+ECGK+F + KH++IHT E+P+KC++CGK FS VLT+H I+H+ +P+ CE CGK F ++L +H +HT EKP+KC ECGK F ++L +H ++HT EKP+KCEECGK F +L +HK +HT EKP+KCEECGK FK +L +HK+I+T+EK +KCEECGK F +L +HK IH Sbjct: 231 VNFYKCKTCGKAFNQFSNLTKHKIIHPEVNP-YKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIH 452 HSP 4 Score: 211.846 bits (538), Expect = 6.897e-63 Identity = 105/208 (50.48%), Postives = 142/208 (68.27%), Query Frame = -3 Query: 2 ITKTRKNSLVTKERGKGFKCKECGKSFKFNCDFKKHRRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKRHKKIHTEEKSFKCEECGKCFKTNGSLKQHKRIH 625 +T T+ + T+E K +KC++CGK F KH+ IHTG +P+ C+ECGK FS LT+H I+H+ +P+KC CGK F ++L +H ++HT EKP+KCEECGK F ++L H +HT EKP+KCEECGK FK +L +HKRI+TKEKP+KCEECGK F +L +HK IHT K +KCEECG F+ +L +HKR+H Sbjct: 275 LTLTKHKKIHTEE--KPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVH 480 HSP 5 Score: 202.601 bits (514), Expect = 1.707e-59 Identity = 101/198 (51.01%), Postives = 134/198 (67.68%), Query Frame = -3 Query: 2 TKERGKGFKCKECGKSFKFNCDFKKHRRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKRHKKIHTEEKSFKCEECGKCFKTNGSLKQHKRIH 595 T R +KCK CGK+F + KH+ IH P+KC+ECGK F++S LT+H +H+ +P+KCE+CGK F + L +H +HT KP+ CEECGK F ++L +H +HT EKP+KC ECGK F +L +HKRIHT EKP+KCEECGK F +L RHK +HT EK +KCEECGK FK + +L +HKRI+ Sbjct: 227 TATRVNFYKCKTCGKAFNQFSNLTKHKIIHPEVNPYKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTKHKRIY 424 HSP 6 Score: 192.971 bits (489), Expect = 8.347e-56 Identity = 100/205 (48.78%), Postives = 133/205 (64.88%), Query Frame = -3 Query: 2 NSLVTKERGKG---FKCKECGKSFKFNCDFKKHRRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKRHKKIHTEEKSFKCEECGKCFKTNGSLKQHKRIH 607 NS + K+R G FKCKECGKS +H++ T +KC+ CGK F++ LT+H I+H + P+KCE CGK F +L +H K+HTEEKP+KCE+CGK F + L +H +HT KP+ CEECGK F +L +HK IHT EKP+KC ECGK F +L +HK+IHT EK +KCEECGK F + +L +HK +H Sbjct: 192 NSNIHKKRQTGKKPFKCKECGKSCCILSQLTQHKKTATRVNFYKCKTCGKAFNQFSNLTKHKIIHPEVNPYKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVH 396 HSP 7 Score: 179.104 bits (453), Expect = 7.279e-51 Identity = 90/184 (48.91%), Postives = 124/184 (67.39%), Query Frame = -3 Query: 71 TKTRKNSLVTKERGKGFKCKECGKSFKFNCDFKKHRRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKRHKKIHTEEKS 622 T TR + T E K +KC+ECGK+FK + KH+RI+T E+P+KC+ECGK FS LT+H I+H+ +P+KCE CG F+ ++L EH ++HT EKP+KC ECGK F ++L +H ++HT EKP+KCEECGK F +L +HK+IHT EKP+K + C F + RHK+ H EKS Sbjct: 388 TLTRHKIVHTGE--KPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNRSSNLTRHKKIHTGEKPYKPKRCDSAFDNTPNFSRHKRNHMGEKS 569 HSP 8 Score: 170.629 bits (431), Expect = 8.362e-48 Identity = 92/202 (45.54%), Postives = 124/202 (61.39%), Query Frame = -3 Query: 2 NSLVTKERGKGFKCKECGKSFKFNCDFKKHRRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKRHKKIHTEEKSFKCEECGKCFKTNGSLKQHKRIH 607 N +T + K F+C + K + H++ TG++PFKC+ECGK LTQH + + +KC+ CGK F ++L +H +H E P+KCEECGK F +L +H K+HTEEKP+KCE+CGK F L +HK IHT KP+ CEECGK F +L +HK IHT EK +KC ECGK F + +L +HKRIH Sbjct: 167 NQCLTTTQSKIFQCDKYVKVLHKFSNSNIHKKRQTGKKPFKCKECGKSCCILSQLTQHKKTATRVNFYKCKTCGKAFNQFSNLTKHKIIHPEVNPYKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIH 368 The following BLAST results are available for this feature:
BLAST of TCONS_00055663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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