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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055664 ID=TCONS_00055664|Name=TCONS_00055664|organism=Clytia hemisphaerica|type=transcript|length=1111bpRun BLAST on NCBI transcript from alignment at scaffold_256:422..6383+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055664 ID=TCONS_00055664|Name=TCONS_00055664|organism=Clytia hemisphaerica|type=transcript|length=5962bp|location=Sequence derived from alignment at scaffold_256:422..6383+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055664 vs. Swiss-Prot (Human)
Match: ZN273 (Zinc finger protein 273 OS=Homo sapiens GN=ZNF273 PE=1 SV=3) HSP 1 Score: 186.422 bits (472), Expect = 7.538e-53 Identity = 89/160 (55.62%), Postives = 114/160 (71.25%), Query Frame = -1
Query: 2 KSIKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFAQSDGLTHHLIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHAEEKSFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKR 481
K KC ECGK+F ++ L KH RIHTGE+P+KC+ECGK F QS LT H IVH+ +P+KCEECGK FK +L KHKRI+ +EK +KCEECGK F ++L +H +HT KP+KCEECG F+ +L +HKR+HT EKP+KC ECGK F +L +
Sbjct: 344 KPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVHTGEKPYKCNECGKAFNWSSTLTK 503 HSP 2 Score: 172.94 bits (437), Expect = 4.909e-48 Identity = 90/175 (51.43%), Postives = 116/175 (66.29%), Query Frame = -1
Query: 2 ITKTRKNNLVTKERGKSIKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFAQSDGLTHHLIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHAEEKSFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKR 526
+T T+ + T+E K KC++CGK F L KH IHTG +P+ C+ECGK F+ LT H I+H+ +P+KC ECGK F +L KHKRIH EK +KCEECGK F ++L H +HT EKP+KCEECGK FK +L +HKRI+TKEKP+KCEECGK F +L +
Sbjct: 275 LTLTKHKKIHTEE--KPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTK 447 HSP 3 Score: 169.859 bits (429), Expect = 5.509e-47 Identity = 83/158 (52.53%), Postives = 106/158 (67.09%), Query Frame = -1
Query: 8 KSIKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFAQSDGLTHHLIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHAEEKSFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSL 481
K C+ECGK F L KH IHTGE+P+KC ECGK F S LT H +H+ +P+KCEECGK F +L +HK +H EK +KCEECGK FK T+L +H +++T+EKP+KCEECGK F +L +HK IHT KP+KCEECG F+ +L
Sbjct: 316 KPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTL 473 HSP 4 Score: 169.859 bits (429), Expect = 6.774e-47 Identity = 82/157 (52.23%), Postives = 109/157 (69.43%), Query Frame = -1
Query: 2 KCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFAQSDGLTHHLIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHAEEKSFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKR 472
KC+ECGK+F + L KH +IHT E+P+KC++CGK F+ LT H I+H+ +P+ CEECGK F +L KHK IH EK +KC ECGK F ++L +H ++HT EKP+KCEECGK F +L +HK +HT EKP+KCEECGK FK +L +
Sbjct: 263 KCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTK 419 HSP 5 Score: 164.851 bits (416), Expect = 3.123e-45 Identity = 79/160 (49.38%), Postives = 108/160 (67.50%), Query Frame = -1
Query: 2 KSIKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFAQSDGLTHHLIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHAEEKSFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKR 481
K KC+ECGK+FK + L KH RI+T E+P+KC+ECGK F+ LT H I+H+ +P+KCEECG F+ +L +HKR+H EK +KC ECGK F ++L +H ++HT EKP+KCEECGK F +L +HK+IHT EKP+K + C F + R
Sbjct: 400 KPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNRSSNLTRHKKIHTGEKPYKPKRCDSAFDNTPNFSR 559 HSP 6 Score: 160.614 bits (405), Expect = 9.547e-44 Identity = 84/165 (50.91%), Postives = 103/165 (62.42%), Query Frame = -1
Query: 2 TKERGKSIKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFAQSDGLTHHLIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHAEEKSFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKR 496
T R KCK CGK+F +L KH IH P+KC+ECGK F QS LT H +H+ +P+KCE+CGK F L KHK IH K + CEECGK F ++L +H +HT EKP+KC ECGK F +L +HKRIHT EKP+KCEECGK F +L R
Sbjct: 227 TATRVNFYKCKTCGKAFNQFSNLTKHKIIHPEVNPYKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTR 391 HSP 7 Score: 151.369 bits (381), Expect = 1.796e-40 Identity = 79/160 (49.38%), Postives = 99/160 (61.88%), Query Frame = -1
Query: 2 KSIKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFAQSDGLTHHLIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHAEEKSFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKR 481
K KCKECGKS L +H + T +KC+ CGK F Q LT H I+H + P+KCEECGK F +L KHK+IH EEK +KCE+CGK F + L +H +HT KP+ CEECGK F +L +HK IHT EKP+KC ECGK F +L +
Sbjct: 204 KPFKCKECGKSCCILSQLTQHKKTATRVNFYKCKTCGKAFNQFSNLTKHKIIHPEVNPYKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTK 363 HSP 8 Score: 137.502 bits (345), Expect = 1.120e-35 Identity = 74/155 (47.74%), Postives = 93/155 (60.00%), Query Frame = -1
Query: 59 TKTRKNNLVTKERGKSIKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFAQSDGLTHHLIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHAEEKSFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEK 523
T T+ + TKE K KC+ECGK+F L KH IHTG +P+KC+ECG F LT H VH+ +P+KC ECGK F +L KHKRIH EK +KCEECGK F ++L H K+HT EKP+K + C F + +HKR H EK
Sbjct: 416 TLTKHKRIYTKE--KPYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNRSSNLTRHKKIHTGEKPYKPKRCDSAFDNTPNFSRHKRNHMGEK 568 HSP 9 Score: 128.257 bits (321), Expect = 1.413e-32 Identity = 72/169 (42.60%), Postives = 96/169 (56.80%), Query Frame = -1
Query: 2 NNLVTKERGKSIKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFAQSDGLTHHLIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHAEEKSFKCEECGKCFKTKTSLKEHIKLHTEEKPFKCEECGKCFKTKGSLKQHKRIHTKEKPFKCEECGKCFKTKGSLKR 508
N +T + K +C + K + H + TG++PFKC+ECGK LT H + + +KC+ CGK F +L KHK IH E +KCEECGK F +L +H K+HTEEKP+KCE+CGK F L +HK IHT KP+ CEECGK F +L +
Sbjct: 167 NQCLTTTQSKIFQCDKYVKVLHKFSNSNIHKKRQTGKKPFKCKECGKSCCILSQLTQHKKTATRVNFYKCKTCGKAFNQFSNLTKHKIIHPEVNPYKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTK 335 HSP 10 Score: 85.8853 bits (211), Expect = 3.136e-18 Identity = 41/86 (47.67%), Postives = 55/86 (63.95%), Query Frame = -1
Query: 224 KSIKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFAQSDGLTHHLIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHAEEKS 481
K KC ECGK+F ++ L KH RIHTGE+P+KC+ECGK F +S LT H +H+ +P+K + C F + +HKR H EKS
Sbjct: 484 KPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNRSSNLTRHKKIHTGEKPYKPKRCDSAFDNTPNFSRHKRNHMGEKS 569 The following BLAST results are available for this feature:
BLAST of TCONS_00055664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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