Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055675 ID=TCONS_00055675|Name=TCONS_00055675|organism=Clytia hemisphaerica|type=transcript|length=1336bpRun BLAST on NCBI transcript from alignment at scaffold_256:23158..24755+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055675 ID=TCONS_00055675|Name=TCONS_00055675|organism=Clytia hemisphaerica|type=transcript|length=1598bp|location=Sequence derived from alignment at scaffold_256:23158..24755+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055675 vs. Swiss-Prot (Human)
Match: ZN782 (Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 2.505e-62 Identity = 110/237 (46.41%), Postives = 149/237 (62.87%), Query Frame = -1 Query: 311 SSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQFECQECGKCFMQKGTLKRHLRTHTGKNNLNVKSVVNDGGKGYLEKTFENSHRR 1021 S + I + E F+C +C F+ K L H Q+ H F+C ECGK F+ S L+ H R H+GE+P+KC+ECGK F K L++H +THTGEKP+KC +CG F QK L H +IH GE +KC CG+ F+QK +L+ H RTHTGEK ++C+ECGK F QK L+ H RTHTGE+ +EC ECGK F +K L++H RTHTG+ N N G+ + +K+ H+R Sbjct: 435 SGLRIHQRTHTGEKPFECHECGKSFNYKSILIVH-QRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYN----CNQCGEAFSQKSNLRVHQR 666 HSP 2 Score: 209.149 bits (531), Expect = 1.083e-59 Identity = 100/209 (47.85%), Postives = 133/209 (63.64%), Query Frame = -1 Query: 395 SSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQFECQECGKCFMQKGTLKRHLRTHTG 1021 S +++ + E F+C +C F L H ++ H +KC+ECGK F S L+ H R H+GEKP+KC +CGK F QK L+ H + HTGEKP+KC CG F QK +L +H + H GE ++CEECGK F QK +L+ H RTHTGEK +EC ECGK F +K L++H RTHTGE+ + C +CG+ F QK L+ H RTHTG Sbjct: 463 SILIVHQRTHTGEKPFECNECGKSFSHMSGLRNH-RRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTG 670 HSP 3 Score: 205.297 bits (521), Expect = 3.176e-58 Identity = 96/197 (48.73%), Postives = 131/197 (66.50%), Query Frame = -1 Query: 395 ENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQFECQECGKCFMQKGTLKRHLRTHTG 985 E +KC +C F K L +H + H +KC +CGK F Q S L+ H R H+GEKP+KC CG+ F+QK NL+ H +THTGEKP++CEECG FRQK +L H + H GE ++C ECGK F++K L++H RTHTGEK + C +CG+ F QK L+ H RTHTGE+ ++C +CG+ F QK +L+ H + H G Sbjct: 503 ERPYKCDECGKAFKLKSGLRKH-HRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEKPYKCDKCGRTFSQKSSLREHQKAHPG 698 HSP 4 Score: 196.052 bits (497), Expect = 6.379e-55 Identity = 102/239 (42.68%), Postives = 140/239 (58.58%), Query Frame = -1 Query: 311 MASSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQFECQECGKCFMQKGTLKRHLRTHTGKNNLNVKSVVNDGGKGYLEKTFENSHRR 1027 M S ++ ++ E ++C +C F +K L +H Q+ H +KC+ C K F+ S L+ H R H+GEKPF+C ECGK F K L H +THTGEKPF+C ECG F L H + H GE +KC+ECGK F K L++H RTHTGEK ++C +CGK F QK L+ H R HTGE+ ++C CG+ F QK L+ H RTHTG+ + GK + +K+ H+R Sbjct: 377 MNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKH-QRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEEC----GKTFRQKSNLRGHQR 610 HSP 5 Score: 189.504 bits (480), Expect = 1.106e-52 Identity = 102/237 (43.04%), Postives = 137/237 (57.81%), Query Frame = -1 Query: 311 SSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQFECQECGKCFMQKGTLKRHLRTHTGKNNLNVKSVVNDGGKGYLEKTFENSHRR 1021 S++ + + + Y C+ F + + H QKVH ++ ECGK + NS+L ++H+GEKP++C ECGK F++K L++H +THTGEKP+KC+ C F K L IH + H GE F+C ECGK F K L H RTHTGEK FEC ECGK F L+ H RTHTGER ++C ECGK F K L++H RTHTG+ N GK + +K+ H R Sbjct: 323 STLPVHQRTHATDKYSDYHPCTETFSYQSTFSVH-QKVHIRAKPYEYNECGKSCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYK----CNQCGKAFGQKSQLRGHHR 554 HSP 6 Score: 171.4 bits (433), Expect = 1.956e-46 Identity = 80/170 (47.06%), Postives = 112/170 (65.88%), Query Frame = -1 Query: 476 ENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGE 985 E +KC +C F +K L H ++H +KC CG+ F+Q SNL+ H R H+GEKP++CEECGK F QK NL+ H +THTGEKP++C ECG F +K L H + H GE + C +CG+ F+QK +L+ H RTHTGEK ++C +CG+ F QK +L+ H + H G+ Sbjct: 531 EKPYKCNQCGKAFGQKSQLRGH-HRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEKPYKCDKCGRTFSQKSSLREHQKAHPGD 699 HSP 7 Score: 142.51 bits (358), Expect = 1.906e-36 Identity = 85/213 (39.91%), Postives = 112/213 (52.58%), Query Frame = -1 Query: 311 FDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQFECQECGKCFMQKGTLKRHLRTHTGKNNLNVKSVVNDGGKGYLEKTFENSHRR 949 F +K + EH +VH +G K E GK F +NS L H R H+ +K C + F+ + H K H KP++ ECG L K H GE ++C ECGK F++K L++H RTHTGEK ++C C K F K L+ H RTHTGE+ FEC ECGK F K L H RTHTG+ N+ GK + + +HRR Sbjct: 294 FSQKSHIREH-HRVH---IGVKPFEYGKSFNRNSTLPVHQRTHATDKYSDYHPCTETFSYQSTFSVHQKVHIRAKPYEYNECGKSCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFE----CNECGKSFSHMSGLRNHRR 498 The following BLAST results are available for this feature:
BLAST of TCONS_00055675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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