Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055676 ID=TCONS_00055676|Name=TCONS_00055676|organism=Clytia hemisphaerica|type=transcript|length=1514bpRun BLAST on NCBI transcript from alignment at scaffold_256:23158..24755+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055676 ID=TCONS_00055676|Name=TCONS_00055676|organism=Clytia hemisphaerica|type=transcript|length=1598bp|location=Sequence derived from alignment at scaffold_256:23158..24755+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00055676 vs. Swiss-Prot (Human)
Match: ZN33B (Zinc finger protein 33B OS=Homo sapiens GN=ZNF33B PE=1 SV=2) HSP 1 Score: 171.785 bits (434), Expect = 7.583e-50 Identity = 122/358 (34.08%), Postives = 164/358 (45.81%), Query Frame = -1 Query: 363 EDQTLDFNDLVRTTLDMEKTDMTSLQIDLIPDLISKDNEV------------LTMETSDNLSISTEEDLSNTENLMEMASSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKTHTRTHDGGKMW*NF*MQKTSLKTSQLNSQKGIKLTYADLYDIPIYEFSL*IVTCVCLFVRSVTNFSRGXI*MSRVWQMLYAKGYLEKTFENSHRKKQFECQECGK 1400 E+ D+N+ RT D +SL IP SKD+ T+ D + + D + N + ++ K E +F+C +C F +K L H Q+VH F+C +CGK F + SNL H R+H+GEKPF+C ECGK F+ K L H +THTGEKP++C CG F QK L H + H G+ ++C ECGK F L H RTHTGEK FEC ECGK F QK L H RTH G K + KT S L ++ + L YE L + T+ + K L + + +K +EC ECGK Sbjct: 243 EENNCDYNEFGRTFCDS-----SSLLFHQIPP--SKDSHYEFSDCEKFLCVKSTLSKHDGVPVK-HYDCGESGNNFRRKLCLSQLQKGDKGEKHFECNECGKAFWEKSHLTRH-QRVHTGEKHFQCNQCGKTFWEKSNLTKHQRSHTGEKPFECNECGKAFSHKSALTLHQRTHTGEKPYQCNACGKTFYQKSDLTKHQRTHTGQKPYECYECGKSFCMNSHLTVHQRTHTGEKPFECLECGKSFCQKSHLTQHQRTHIGDKPYECNACGKTFYHKSVLTRH---QIIHTGLKPYECYECGKTFCLKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYRTHTGEKPYECHECGK 588 HSP 2 Score: 45.0542 bits (105), Expect = 7.583e-50 Identity = 23/49 (46.94%), Postives = 28/49 (57.14%), Query Frame = -3 Query: 217 MMEXKGTLKRHLRTHTGEKQFECQ*CGKCFMQKGTLKTYTRTHDGGKMW 363 + K L +H RTHTGEK +EC CGK F QK L + R H G K + Sbjct: 589 IFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRIHIGEKPY 637 HSP 3 Score: 158.303 bits (399), Expect = 3.335e-42 Identity = 93/236 (39.41%), Postives = 122/236 (51.69%), Query Frame = -1 Query: 576 SSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECG--------------IH--------------FRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKTHTRTHDGGKMW*NF*MQKTSLKTSQLNSQKGIKL 1199 S++ + + E ++C C F +K L +H Q+ H ++C ECGK F NS+L H R H+GEKPF+C ECGK F QK +L +H +TH G+KP++C CG IH F K L IH + H GE F C ECGK F+ K +L +H RTHTGEK +EC ECGK F K L H RTH G K + KT + SQL + I + Sbjct: 398 SALTLHQRTHTGEKPYQCNACGKTFYQKSDLTKH-QRTHTGQKPYECYECGKSFCMNSHLTVHQRTHTGEKPFECLECGKSFCQKSHLTQHQRTHIGDKPYECNACGKTFYHKSVLTRHQIIHTGLKPYECYECGKTFCLKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYRTHTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRIHI 632 HSP 4 Score: 33.113 bits (74), Expect = 3.335e-42 Identity = 21/54 (38.89%), Postives = 26/54 (48.15%), Query Frame = -2 Query: 308 FECQECGKCFMQKGTLKRHLRTHTGKNNLNVKSVVNDGGKGYLEKTFENSHRRK 469 +EC ECGK F K L H RTHT + N+ GK + K+ H RK Sbjct: 637 YECNECGKAFCHKSALIVHQRTHTQEKPYK----CNECGKSFCVKSGLILHERK 686 HSP 5 Score: 160.614 bits (405), Expect = 5.089e-42 Identity = 80/170 (47.06%), Postives = 100/170 (58.82%), Query Frame = -1 Query: 645 FKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKTHTRTHDGGKMW 1154 ++C C F K L H Q +H + ++C ECGK F S+L H R H+GEKPF C ECGK F+ K L +H++THTGEKP++C ECG F K L H + H GE ++C ECGK F QK L +H R H GEK +EC ECGK F K L H RTH K + Sbjct: 497 YECNACGKTFYHKSVLTRH-QIIHTGLKPYECYECGKTFCLKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYRTHTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRIHIGEKPYECNECGKAFCHKSALIVHQRTHTQEKPY 665 HSP 6 Score: 160.229 bits (404), Expect = 5.598e-42 Identity = 84/187 (44.92%), Postives = 108/187 (57.75%), Query Frame = -1 Query: 645 MASSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKTHTRTHDGGKMW 1205 M S + + + E F+C++C F +K L +H Q+ H ++C CGK F S L H H+G KP++C ECGK F K +L H +THTGEKPF C ECG F K +L+ H + H GE ++C ECGKIF K L +H RTHTGEK +EC ECGK F QK L H R H G K + Sbjct: 452 MNSHLTVHQRTHTGEKPFECLECGKSFCQKSHLTQH-QRTHIGDKPYECNACGKTFYHKSVLTRHQIIHTGLKPYECYECGKTFCLKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYRTHTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRIHIGEKPY 637 HSP 7 Score: 156.377 bits (394), Expect = 1.403e-40 Identity = 82/185 (44.32%), Postives = 104/185 (56.22%), Query Frame = -1 Query: 651 MASSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKTHTRTHDGGK 1205 + S + I + E F C +C F K L++H + GE ++C ECGK F S L H R H+GEKP++C ECGK F QK L +H + H GEKP++C ECG F K +L +H + H E +KC ECGK F K L H R HTGEK +EC ECGK F K +L H R H G K Sbjct: 536 LKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYRTHTGE-KPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRIHIGEKPYECNECGKAFCHKSALIVHQRTHTQEKPYKCNECGKSFCVKSGLILHERKHTGEKPYECNECGKSFSHKSSLTVHHRAHTGEK 719 HSP 8 Score: 154.836 bits (390), Expect = 3.932e-40 Identity = 81/173 (46.82%), Postives = 104/173 (60.12%), Query Frame = -1 Query: 645 ENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKTHTRTHDGGKMW 1163 E ++C +C F +K L +H Q++H ++C ECGK F S L H R H+ EKP+KC ECGK F K L H + HTGEKP++C ECG F K SL +H + H GE + +C ECGKIF +K L +H R+HTGEK +EC C K F QK L H RTH G K + Sbjct: 606 EKPYECNECGKTFCQKSQLTQH-QRIHIGEKPYECNECGKAFCHKSALIVHQRTHTQEKPYKCNECGKSFCVKSGLILHERKHTGEKPYECNECGKSFSHKSSLTVHHRAHTGEKSCQCNECGKIFYRKSDLAKHQRSHTGEKPYECNTCRKTFSQKSNLIVHQRTHIGEKPY 777 HSP 9 Score: 153.295 bits (386), Expect = 1.364e-39 Identity = 81/170 (47.65%), Postives = 101/170 (59.41%), Query Frame = -1 Query: 645 FKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKTHTRTHDGGKMW 1154 ++C +C F K L H Q+ H F C ECGK F+ S L H R H+GEKP++C ECGK+F K L +H +THTGEKP++C ECG F QK L H +IH GE ++C ECGK F K +L H RTHT EK ++C ECGK F K L H R H G K + Sbjct: 525 YECYECGKTFCLKSDLTIH-QRTHTGEKPFACPECGKFFSHKSTLSQHYRTHTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRIHIGEKPYECNECGKAFCHKSALIVHQRTHTQEKPYKCNECGKSFCVKSGLILHERKHTGEKPY 693 HSP 10 Score: 152.14 bits (383), Expect = 3.329e-39 Identity = 80/173 (46.24%), Postives = 101/173 (58.38%), Query Frame = -1 Query: 645 ENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKTHTRTHDGGKMW 1163 E ++C +C F K +L +H + H ++C ECGK F Q S L H R H GEKP++C ECGK F K L H +THT EKP+KC ECG F K L +H + H GE ++C ECGK F+ K SL H R HTGEK +C ECGK F +K L H R+H G K + Sbjct: 578 EKPYECHECGKIFYNKSYLTKH-NRTHTGEKPYECNECGKTFCQKSQLTQHQRIHIGEKPYECNECGKAFCHKSALIVHQRTHTQEKPYKCNECGKSFCVKSGLILHERKHTGEKPYECNECGKSFSHKSSLTVHHRAHTGEKSCQCNECGKIFYRKSDLAKHQRSHTGEKPY 749 HSP 11 Score: 121.709 bits (304), Expect = 3.254e-29 Identity = 66/146 (45.21%), Postives = 86/146 (58.90%), Query Frame = -1 Query: 726 ENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFE 1163 E ++C +C F K L H Q+ H + +KC ECGK F S L H R H+GEKP++C ECGK F+ K +L H + HTGEK +C ECG F +K LA H + H GE ++C C K F+QK +L H RTH GEK +E Sbjct: 634 EKPYECNECGKAFCHKSALIVH-QRTHTQEKPYKCNECGKSFCVKSGLILHERKHTGEKPYECNECGKSFSHKSSLTVHHRAHTGEKSCQCNECGKIFYRKSDLAKHQRSHTGEKPYECNTCRKTFSQKSNLIVHQRTHIGEKPYE 778 The following BLAST results are available for this feature:
BLAST of TCONS_00055676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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