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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055678 ID=TCONS_00055678|Name=TCONS_00055678|organism=Clytia hemisphaerica|type=transcript|length=793bpRun BLAST on NCBI transcript from alignment at scaffold_256:45572..54449+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055678 ID=TCONS_00055678|Name=TCONS_00055678|organism=Clytia hemisphaerica|type=transcript|length=8878bp|location=Sequence derived from alignment at scaffold_256:45572..54449+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055678 vs. Swiss-Prot (Human)
Match: ZN273 (Zinc finger protein 273 OS=Homo sapiens GN=ZNF273 PE=1 SV=3) HSP 1 Score: 152.91 bits (385), Expect = 3.577e-42 Identity = 76/139 (54.68%), Postives = 97/139 (69.78%), Query Frame = -2
Query: 1 QSFKCKECGKSFKFNCDLKKYLRIHTGERSFKCQECGKCF----ALTHHPIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHTEEKSFKCEECGKCFKTNGSLKQHKTIHTKEKTFKCEECGKSFRSKYLLKNHLREHTG 405
+ +KC ECGK+F ++ L K+ RIHTGE+ +KC+ECGK F LT H IVH+ +P+KCEECGK FK +L KHKRI+T+EK +KCEECGK F +L +HK IHT K +KCEECG +FR+ L H R HTG
Sbjct: 344 KPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVHTG 482 HSP 2 Score: 142.51 bits (358), Expect = 1.462e-38 Identity = 70/139 (50.36%), Postives = 96/139 (69.06%), Query Frame = -2
Query: 1 QSFKCKECGKSFKFNCDLKKYLRIHTGERSFKCQECGKCFA----LTHHPIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHTEEKSFKCEECGKCFKTNGSLKQHKTIHTKEKTFKCEECGKSFRSKYLLKNHLREHTG 405
+ +KC+ECGK+FK + L K+ RI+T E+ +KC+ECGK F+ LT H I+H+ +P+KCEECG F+ +L +HKR+HT EK +KC ECGK F + +L +HK IHT EK +KCEECGK+F L H + HTG
Sbjct: 400 KPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNRSSNLTRHKKIHTG 538 HSP 3 Score: 135.576 bits (340), Expect = 3.969e-36 Identity = 69/137 (50.36%), Postives = 91/137 (66.42%), Query Frame = -2
Query: 1 FKCKECGKSFKFNCDLKKYLRIHTGERSFKCQECGKCFA----LTHHPIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHTEEKSFKCEECGKCFKTNGSLKQHKTIHTKEKTFKCEECGKSFRSKYLLKNHLREHTG 399
+KC+ECGK+F + L K+ +IHT E+ +KC++CGK F+ LT H I+H+ +P+ CEECGK F +L KHK IHT EK +KC ECGK F + +L +HK IHT EK +KCEECGK+F L H HTG
Sbjct: 262 YKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTG 398 HSP 4 Score: 126.331 bits (316), Expect = 9.316e-33 Identity = 70/153 (45.75%), Postives = 91/153 (59.48%), Query Frame = -2
Query: 1 TKTMKNNLVTKERGQSFKCKECGKSFKFNCDLKKYLRIHTGERSFKCQECGKCF----ALTHHPIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHTEEKSFKCEECGKCFKTNGSLKQHKTIHTKEKTFKCEECGKSFRSKYLLKNHLREHTG 447
T T + TKE+ +KC+ECGK+F L K+ IHTG + +KC+ECG F LT H VH+ +P+KC ECGK F +L KHKRIHT EK +KCEECGK F + +L +HK IHT EK +K + C +F + H R H G
Sbjct: 416 TLTKHKRIYTKEK--PYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNRSSNLTRHKKIHTGEKPYKPKRCDSAFDNTPNFSRHKRNHMG 566 HSP 5 Score: 96.6709 bits (239), Expect = 1.932e-22 Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = -2
Query: 76 ITKTMKNNLVTKERGQSFKCKECGKSFKFNCDLKKYLRIHTGERSFKCQECGKCF----ALTHHPIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHTEEKSFKCEECGKCFKTNGSLKQHKTIHTKEKT 450
+ T+ + + + +KC+ECG +F+ L ++ R+HTGE+ +KC ECGK F LT H +H+ +P+KCEECGK F +L +HK+IHT EK +K + C F + +HK H EK+
Sbjct: 441 VFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNRSSNLTRHKKIHTGEKPYKPKRCDSAFDNTPNFSRHKRNHMGEKS 569 HSP 6 Score: 94.3597 bits (233), Expect = 1.297e-21 Identity = 59/139 (42.45%), Postives = 78/139 (56.12%), Query Frame = -2
Query: 1 FNCDLKKYLRI-------------HTGERSFKCQECGK--CF--ALTHHPIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHTEEKSFKCEECGKCFKTNGSLKQHKTIHTKEKTFKCEECGKSFRSKYLLKNHLREHTG 366
F CD KY+++ TG++ FKC+ECGK C LT H + + +KC+ CGK F +L KHK IH E +KCEECGK F + +L +HK IHT+EK +KCE+CGK F +L H HTG
Sbjct: 178 FQCD--KYVKVLHKFSNSNIHKKRQTGKKPFKCKECGKSCCILSQLTQHKKTATRVNFYKCKTCGKAFNQFSNLTKHKIIHPEVNPYKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFSVLTKHKIIHTG 314 The following BLAST results are available for this feature:
BLAST of TCONS_00055678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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