TCONS_00055686 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055686
Unique NameTCONS_00055686
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055686 ID=TCONS_00055686|Name=TCONS_00055686|organism=Clytia hemisphaerica|type=transcript|length=384bp
tatgAACGAAGTCAAAAAATGTtacagaaaaagttaatgatatGGATCTG
GTCTCCATCAAAATTGAACCTGATGATGAGAATCAATATGTTGGCAAAGG
AGAGCATTCATTTACTGGCAGAAGCGTTAAAGATAGTTACTTAGAAATAA
CAATTGAAGAGGAAGATAATTCTTTGACTCCTAATGAAGAGGTACCATAT
CTTTTACTTCAATCAGATTCTTTTGATATTAATGATAAAACGGGTGAAAC
AGTTGATTCAAAAGGATTTTCTTCGGAATCATCTGTTCCTTGTGATGATT
CACAACAGGCTGATAGAAATCAAGATTCATCGAATGTTGCCAGTTCGGTG
atcgaaaaaaagaaaactccaGGAAAGAAAAAGA
Run BLAST on NCBI

protein sequence of TCONS_00055686-protein

>TCONS_00055686-protein ID=TCONS_00055686-protein|Name=TCONS_00055686-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MDLVSIKIEPDDENQYVGKGEHSFTGRSVKDSYLEITIEEEDNSLTPNEE
VPYLLLQSDSFDINDKTGETVDSKGFSSESSVPCDDSQQADRNQDSSNVA
SSVIEKKKTPGKKK
Run BLAST on NCBI

transcript from alignment at scaffold_256:39143..39526

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055686 ID=TCONS_00055686|Name=TCONS_00055686|organism=Clytia hemisphaerica|type=transcript|length=384bp|location=Sequence derived from alignment at scaffold_256:39143..39526 (Clytia hemisphaerica)
TCTTTTTCTTTCCtggagttttctttttttcgatCACCGAACTGGCAACA
TTCGATGAATCTTGATTTCTATCAGCCTGTTGTGAATCATCACAAGGAAC
AGATGATTCCGAAGAAAATCCTTTTGAATCAACTGTTTCACCCGTTTTAT
CATTAATATCAAAAGAATCTGATTGAAGTAAAAGATATGGTACCTCTTCA
TTAGGAGTCAAAGAATTATCTTCCTCTTCAATTGTTATTTCTAAGTAACT
ATCTTTAACGCTTCTGCCAGTAAATGAATGCTCTCCTTTGCCAACATATT
GATTCTCATCATCAGGTTCAATTTTGATGGAGACCAGATCCatatcatta
actttttctgtaACATTTTTTGACTTCGTTcata

Coding sequence (CDS) from alignment at scaffold_256:39143..39526

>TCONS_00055686 ID=TCONS_00055686|Name=TCONS_00055686|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_256:39143..39526 (Clytia hemisphaerica)
CTTTTTCTTTCCtggagttttctttttttcgatCACCGAACTGGCAACAT
TCGATGAATCTTGATTTCTATCAGCCTGTTGTGAATCATCACAAGGAACA
GATGATTCCGAAGAAAATCCTTTTGAATCAACTGTTTCACCCGTTTTATC
ATTAATATCAAAAGAATCTGATTGAAGTAAAAGATATGGTACCTCTTCAT
TAGGAGTCAAAGAATTATCTTCCTCTTCAATTGTTATTTCTAAGTAACTA
TCTTTAACGCTTCTGCCAGTAAATGAATGCTCTCCTTTGCCAACATATTG
ATTCTCATCATCAGGTTCAATTTTGATGGAGACCAGATCCat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035041XLOC_035041Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055686-proteinTCONS_00055686-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055686-exon-scaffold_256-1491911889:39143..39526TCONS_00055686-exon-scaffold_256-1491911889:39143..39526Clytia hemisphaericaexon
TCONS_00055686-exon-scaffold_256-1510915933:39143..39526TCONS_00055686-exon-scaffold_256-1510915933:39143..39526Clytia hemisphaericaexon
TCONS_00055686-exon-scaffold_256-1575043694:39143..39526TCONS_00055686-exon-scaffold_256-1575043694:39143..39526Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:39143..39526 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.42772	3.37625	1.30776	1.1906	0.968233	0.273337	0	0	0.0487186	0	0.205393	0	0	0.280043	0.807731	0.322376	0	0.734859	0	0	0.796665	0.398604	2.5059	2.88274	6.43756	6.4609	0	0	1.78963	1.48917
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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