TCONS_00055688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055688
Unique NameTCONS_00055688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055688 ID=TCONS_00055688|Name=TCONS_00055688|organism=Clytia hemisphaerica|type=transcript|length=863bp
agataacaaAAAAAATAGTGATATGAATAAAGAATTCAAAGACGAACAAA
AAGTGGATTCGGTTTCCATCAAGATTGGTCCTGATGAtgcatttttaaat
ttattagGAGAGAAAAAGCATGAATTTGTGGATACAAACGCAGATGATGA
TATACCATTGAAGATAAAGATTGAAGAGGAAATTAATTCTTTTGCCCCTG
TCGAAGAGGTATCAGATTTTCAGCATCAACCAGACtcttttgatattaaa
attGAACTTGATGAAATAATTCCACCAACAAACTTAACAACAGATGCCGC
TAATTTACAAGTAGAAAATGTAGAAACCagggaaagaaaaaataatcttG
CCCGAAAATggaataaaagaaattttatttgcaAAGATTGTGGTAAAGCC
TTTCAGTTCTACTGTAATTTGAAAAATCATCTTAGAATTCACACTGGCGA
AAAACCTTTCaagtgtcaagaatgtggtaaatgttttacTCAAAAAAGTA
GTTTAAATGTGCATGTAAAGATTCACACTGGCGAAAAACCTTTTAAATGT
AAAGAATGTGGTAAACAGTTTTCTCAACGAGGTAACTTGATACAACATTC
AAACATACACAATGGAATCAAATCTTTTAAATGTAAGGAATGTGGTAAGT
GCTTTTCTCGAAAAGACACTTTAAATATTCACATGAAAACTatacatcaa
aatcaaaatttattggatGTTGCTAGTTTGATTGTTGAGAACGAAGAGAC
GAGGTTAAACAAAATCGATTATTCGAAGTATTGAGTATGTAATATGTGTA
GTTCATATTTGGCTTAAAACAGAGTTGTTATTGTGGGATTTTTCATTTCT
GAggactaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00055688-protein

>TCONS_00055688-protein ID=TCONS_00055688-protein|Name=TCONS_00055688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
DNKKNSDMNKEFKDEQKVDSVSIKIGPDDAFLNLLGEKKHEFVDTNADDD
IPLKIKIEEEINSFAPVEEVSDFQHQPDSFDIKIELDEIIPPTNLTTDAA
NLQVENVETRERKNNLARKWNKRNFICKDCGKAFQFYCNLKNHLRIHTGE
KPFKCQECGKCFTQKSSLNVHVKIHTGEKPFKCKECGKQFSQRGNLIQHS
NIHNGIKSFKCKECGKCFSRKDTLNIHMKTIHQNQNLLDVASLIVENEET
RLNKIDYSKY
Run BLAST on NCBI

transcript from alignment at scaffold_256:48017..48879

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055688 ID=TCONS_00055688|Name=TCONS_00055688|organism=Clytia hemisphaerica|type=transcript|length=863bp|location=Sequence derived from alignment at scaffold_256:48017..48879 (Clytia hemisphaerica)
atttttagtccTCAGAAATGAAAAATCCCACAATAACAACTCTGTTTTAA
GCCAAATATGAACTACACATATTACATACTCAATACTTCGAATAATCGAT
TTTGTTTAACCTCGTCTCTTCGTTCTCAACAATCAAACTAGCAACatcca
ataaattttgattttgatgtatAGTTTTCATGTGAATATTTAAAGTGTCT
TTTCGAGAAAAGCACTTACCACATTCCTTACATTTAAAAGATTTGATTCC
ATTGTGTATGTTTGAATGTTGTATCAAGTTACCTCGTTGAGAAAACTGTT
TACCACATTCTTTACATTTAAAAGGTTTTTCGCCAGTGTGAATCTTTACA
TGCACATTTAAACTACTTTTTTGAgtaaaacatttaccacattcttgaca
cttGAAAGGTTTTTCGCCAGTGTGAATTCTAAGATGATTTTTCAAATTAC
AGTAGAACTGAAAGGCTTTACCACAATCTTtgcaaataaaatttctttta
ttccATTTTCGGGCaagattattttttctttccctGGTTTCTACATTTTC
TACTTGTAAATTAGCGGCATCTGTTGTTAAGTTTGTTGGTGGAATTATTT
CATCAAGTTCaattttaatatcaaaagaGTCTGGTTGATGCTGAAAATCT
GATACCTCTTCGACAGGGGCAAAAGAATTAATTTCCTCTTCAATCTTTAT
CTTCAATGGTATATCATCATCTGCGTTTGTATCCACAAATTCATGCTTTT
TCTCTCctaataaatttaaaaatgcaTCATCAGGACCAATCTTGATGGAA
ACCGAATCCACTTTTTGTTCGTCTTTGAATTCTTTATTCATATCACTATT
TTTTttgttatct

Coding sequence (CDS) from alignment at scaffold_256:48017..48879

>TCONS_00055688 ID=TCONS_00055688|Name=TCONS_00055688|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at scaffold_256:48017..48879 (Clytia hemisphaerica)
TCAATACTTCGAATAATCGATTTTGTTTAACCTCGTCTCTTCGTTCTCAA
CAATCAAACTAGCAACatccaataaattttgattttgatgtatAGTTTTC
ATGTGAATATTTAAAGTGTCTTTTCGAGAAAAGCACTTACCACATTCCTT
ACATTTAAAAGATTTGATTCCATTGTGTATGTTTGAATGTTGTATCAAGT
TACCTCGTTGAGAAAACTGTTTACCACATTCTTTACATTTAAAAGGTTTT
TCGCCAGTGTGAATCTTTACATGCACATTTAAACTACTTTTTTGAgtaaa
acatttaccacattcttgacacttGAAAGGTTTTTCGCCAGTGTGAATTC
TAAGATGATTTTTCAAATTACAGTAGAACTGAAAGGCTTTACCACAATCT
TtgcaaataaaatttcttttattccATTTTCGGGCaagattattttttct
ttccctGGTTTCTACATTTTCTACTTGTAAATTAGCGGCATCTGTTGTTA
AGTTTGTTGGTGGAATTATTTCATCAAGTTCaattttaatatcaaaagaG
TCTGGTTGATGCTGAAAATCTGATACCTCTTCGACAGGGGCAAAAGAATT
AATTTCCTCTTCAATCTTTATCTTCAATGGTATATCATCATCTGCGTTTG
TATCCACAAATTCATGCTTTTTCTCTCctaataaatttaaaaatgcaTCA
TCAGGACCAATCTTGATGGAAACCGAATCCACTTTTTGTTCGTCTTTGAA
TTCTTTATTCATATCACTATTTTTTttgttatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035043XLOC_035043Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055688-proteinTCONS_00055688-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055688-exon-scaffold_256-1491911889:48017..48879TCONS_00055688-exon-scaffold_256-1491911889:48017..48879Clytia hemisphaericaexon
TCONS_00055688-exon-scaffold_256-1510915933:48017..48879TCONS_00055688-exon-scaffold_256-1510915933:48017..48879Clytia hemisphaericaexon
TCONS_00055688-exon-scaffold_256-1575043694:48017..48879TCONS_00055688-exon-scaffold_256-1575043694:48017..48879Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:48017..48879 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.625468	0.413	0.135499	0.131455	0.146311	0.0578085	0.20923	0.195879	0.13714	0	0.129889	0.21677	0.108235	0.232787	0.0314341	0.0661136	0.30238	0.180234	0.0576661	0.0651029	0	0.0767489	0.280525	0.423627	0.582429	0.623765	0	0	0.308452	0.123921
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00055688 vs. Swiss-Prot (Human)
Match: ZN829 (Zinc finger protein 829 OS=Homo sapiens GN=ZNF829 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.230e-36
Identity = 61/119 (51.26%), Postives = 86/119 (72.27%), Query Frame = 2 
Query:  362 NKRNFICKDCGKAFQFYCNLKNHLRIHTGEKPFKCQECGKCFTQKSSLNVHVKIHTGEKPFKCKECGKQFSQRGNLIQHSNIHNGIKSFKCKECGKCFSRKDTLNIHMKTIHQNQNLLD 718
             ++ + CK+CGKAF++  NL +H RIHTGEKP++C+ CGK FT+ S L +H++IHTGEKP++CKECGK F+Q   LIQH  +H G K ++CK+CGK F+   TL  H + IH  + L +
Sbjct:  236 GEKPYECKECGKAFKYCSNLNDHQRIHTGEKPYECKVCGKAFTKSSQLFLHLRIHTGEKPYECKECGKAFTQHSRLIQHQRMHTGEKPYECKQCGKAFNSASTLTNHHR-IHAGEKLYE 353

HSP 2 Score: 110.923 bits (276), Expect = 1.456e-27
Identity = 53/119 (44.54%), Postives = 74/119 (62.18%), Query Frame = 2 
Query:  362 NKRNFICKDCGKAFQFYCNLKNHLRIHTGEKPFKCQECGKCFTQKSSLNVHVKIHTGEKPFKCKECGKQFSQRGNLIQHSNIHNGIKSFKCKECGKCFSRKDTLNIHMKTIHQNQNLLD 718
             ++ + CK+CGKAF  +  L  H R+HTGEKP++C++CGK F   S+L  H +IH GEK ++C+EC K F Q   LIQH  IH   K ++C ECGK F++   L  H + IH  +   D
Sbjct:  292 GEKPYECKECGKAFTQHSRLIQHQRMHTGEKPYECKQCGKAFNSASTLTNHHRIHAGEKLYECEECRKAFIQSSELIQHQRIHTDEKPYECNECGKAFNKGSNLTRHQR-IHTGEKPYD 409

HSP 3 Score: 110.538 bits (275), Expect = 1.663e-27
Identity = 53/107 (49.53%), Postives = 67/107 (62.62%), Query Frame = 2 
Query:  362 NKRNFICKDCGKAFQFYCNLKNHLRIHTGEKPFKCQECGKCFTQKSSLNVHVKIHTGEKPFKCKECGKQFSQRGNLIQHSNIHNGIKSFKCKECGKCFSRKDTLNIH 682
             ++ + CK CGKAF     L NH RIH GEK ++C+EC K F Q S L  H +IHT EKP++C ECGK F++  NL +H  IH G K + CKECGK F  +  L  H
Sbjct:  320 GEKPYECKQCGKAFNSASTLTNHHRIHAGEKLYECEECRKAFIQSSELIQHQRIHTDEKPYECNECGKAFNKGSNLTRHQRIHTGEKPYDCKECGKAFGSRSDLIRH 426

HSP 4 Score: 107.457 bits (267), Expect = 1.967e-26
Identity = 51/116 (43.97%), Postives = 76/116 (65.52%), Query Frame = 2 
Query:  359 WNKRNFICKDCGKAFQFYCNLKNHLRIHTGEKPFKCQECGKCFTQKSSLNVHVKIHTGEKPFKCKECGKQFSQRGNLIQHSNIHNGIKSFKCKECGKCFSRKDTLNIHMKTIHQNQ 706
            + ++++  K+ GK+F     +  H RIHTG+KP++C+ECGK F+  S  + H +IHTGEKP++CKECGK F    NL  H  IH G K ++CK CGK F++   L +H++ IH  +
Sbjct:  179 FGEKHYESKEYGKSFSRGSLVTRHQRIHTGKKPYECKECGKAFSCSSYFSQHQRIHTGEKPYECKECGKAFKYCSNLNDHQRIHTGEKPYECKVCGKAFTKSSQLFLHLR-IHTGE 293

HSP 5 Score: 97.0561 bits (240), Expect = 8.077e-23
Identity = 51/109 (46.79%), Postives = 65/109 (59.63%), Query Frame = 2 
Query:  380 CKDCGKAFQFYCNLKNHLRIHTGEKPFKCQECGKCFTQKSSLNVHVKIHTGEKPFKCKECGKQFSQRGNLIQHSNIHNGIKSFKCKECGKCFSRKDTLNIHMKTIHQNQ 706
            CK CGK F        H RIH GEK ++ +E GK F++ S +  H +IHTG+KP++CKECGK FS      QH  IH G K ++CKECGK F     LN H + IH  +
Sbjct:  158 CKICGKTFNQNSQFIQHQRIHFGEKHYESKEYGKSFSRGSLVTRHQRIHTGKKPYECKECGKAFSCSSYFSQHQRIHTGEKPYECKECGKAFKYCSNLNDHQR-IHTGE 265

HSP 6 Score: 95.5153 bits (236), Expect = 2.842e-22
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 2 
Query:  374 FICKDCGKAFQFYCNLKNHLRIHTGEKPFKCQECGKCFTQKSSLNVHVKIHTGEKPFKCKECGKQFSQRGNLIQHSNIHNG 616
            + C++C KAF     L  H RIHT EKP++C ECGK F + S+L  H +IHTGEKP+ CKECGK F  R +LI+H  IH G
Sbjct:  352 YECEECRKAFIQSSELIQHQRIHTDEKPYECNECGKAFNKGSNLTRHQRIHTGEKPYDCKECGKAFGSRSDLIRHEGIHTG 432
The following BLAST results are available for this feature:
BLAST of TCONS_00055688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN8291.230e-3651.26Zinc finger protein 829 OS=Homo sapiens GN=ZNF829 ... [more]
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