TCONS_00055690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055690
Unique NameTCONS_00055690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055690 ID=TCONS_00055690|Name=TCONS_00055690|organism=Clytia hemisphaerica|type=transcript|length=296bp
TTGTGAAACTTATTTTGTATCAGCTACAAAAGATTTTGTTACTAACATTG
ATGCCAACCTAATGGCTGAAATGATGATACAAGACCCAATGGTTTTATCA
CAATTTGgaacaatttttaaatcttgcgACCCTCAAATAAAGCGGGAAGT
TGGTATGAATCTTCTGGAGGAAAtgtttatcttttatttttgcTTACGAT
CCTTTTCTTATGCAAAGCAACAGcagcaaaaacataaaattgaaaaagca
TCCAATCGTAAAGGATCATTACGGAGTGATCTTAAAAAAGCATGTC
Run BLAST on NCBI

transcript from alignment at scaffold_256:57343..57638

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055690 ID=TCONS_00055690|Name=TCONS_00055690|organism=Clytia hemisphaerica|type=transcript|length=296bp|location=Sequence derived from alignment at scaffold_256:57343..57638 (Clytia hemisphaerica)
GACATGCTTTTTTAAGATCACTCCGTAATGATCCTTTACGATTGGAtgct
ttttcaattttatgtttttgctgCTGTTGCTTTGCATAAGAAAAGGATCG
TAAgcaaaaataaaagataaacaTTTCCTCCAGAAGATTCATACCAACTT
CCCGCTTTATTTGAGGGTcgcaagatttaaaaattgttcCAAATTGTGAT
AAAACCATTGGGTCTTGTATCATCATTTCAGCCATTAGGTTGGCATCAAT
GTTAGTAACAAAATCTTTTGTAGCTGATACAAAATAAGTTTCACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035045XLOC_035045Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055690-exon-scaffold_256-1491911889:57343..57638TCONS_00055690-exon-scaffold_256-1491911889:57343..57638Clytia hemisphaericaexon
TCONS_00055690-exon-scaffold_256-1510915933:57343..57638TCONS_00055690-exon-scaffold_256-1510915933:57343..57638Clytia hemisphaericaexon
TCONS_00055690-exon-scaffold_256-1575043694:57343..57638TCONS_00055690-exon-scaffold_256-1575043694:57343..57638Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:57343..57638 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.813825	1.19041	0.460727	0.450749	4.38995	0.433625	2.61575	2.9386	1.02869	0.849467	0	0.271001	1.0825	2.24837	0.924233	1.2398	1.8328	1.07644	4.75812	0	2.15536	2.87849	0	1.91745	0	0.389908	4.92429	3.62362	2.2582	0.53358
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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