TCONS_00055701 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055701
Unique NameTCONS_00055701
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055701 ID=TCONS_00055701|Name=TCONS_00055701|organism=Clytia hemisphaerica|type=transcript|length=385bp
GCCAAGGGGTGTTATAAGAATGTCTcgagtggaaaattatacaaagGCTG
CTTATGACCGCACCCTCCCCCTCAGAGCATATGTACTTTATATGAATGGT
CCTAAATGATGTCCATGTGTTctgttttcaaataaatttagCCATGTCAC
AAGTGTTCTAGTGGAATATTAAACACTCAGTATTctctaatttcaaattt
tattttcaggtcTTAAAAGCTAGTGGAAGAAGTGTCTGGATAGCAATTTT
CAAGaCCTTAAGGATCGGACTGATTGGATTGGATCGGACAGATTGCTCAT
CGTCTCGACGTCTTGTAGCGATCAGATTCGTCAACCTTTATAACATCAAT
CCCATGTACTATTGCcatttggattttgaattttt
Run BLAST on NCBI

transcript from alignment at scaffold_257:8964..9792-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055701 ID=TCONS_00055701|Name=TCONS_00055701|organism=Clytia hemisphaerica|type=transcript|length=829bp|location=Sequence derived from alignment at scaffold_257:8964..9792- (Clytia hemisphaerica)
GCCAAGGGGTGTTATAAGAATGTCTCGAGTGGAAAATTATACAAAGGCTG
CTTATGACCGCACCCTCCCCCTCAGAGCATATGTACTTTATATGAATGGT
CCTAAATGATGTCCATGTGTTCTGTTTTCAAATAAATTTAGCCATGTCAC
AAGTGTTCTAGTGGAATATTAAACACTCAGTATTCTCTAATTTCAAATTT
TATTTTCAGGTCTTAAAAGCTAGTGGAAGAAGTGTCTGGATAGCAATTTT
CAAGGTAAGGATATTTCAATTTGAAATAATTCTATGAAATTTTTGGACTG
TGGTAATTTTTGCTAATTATTTCAGGGTACACGAACTGTGACAAGGAGTT
GTACATAGTAATTAGTTCTAACACCTGTTTTAAGGGGGTCTGAACCATGT
GAAAATTTCTCTAAGGAAAGGAGATCCCATTGGAAAGGAATTGAAATGAA
TTCTTATTTTTCTGATCAGGAATGGAGACTTTTCGGTATTTGTAAACAAT
CTAATAGGAAATTTGCCCAATTTATGACCCATTCCCCATTTTTAGGCAAT
ATTAGTGTGGTATGTGAGTGGTAAGCAGTCAGATTGAGAATCGGAATTTT
TTAAGATTAGGGGGGTGCCAAGATGGGAAGATCCGACCTATCCACACTAT
GAAATTATGTATGTTATGTAAATTTTATTTCTCTTTTTCATTCTTTAGAC
CTTAAGGATCGGACTGATTGGATTGGATCGGACAGATTGCTCATCGTCTC
GACGTCTTGTAGCGATCAGATTCGTCAACCTTTATAACATCAATCCCATG
TACTATTGCCATTTGGATTTTGAATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035055XLOC_035055Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055701-exon-scaffold_257-1575043694:9539..9792TCONS_00055701-exon-scaffold_257-1575043694:9539..9792Clytia hemisphaericaexon
TCONS_00055701-exon-scaffold_257-1575043694:8964..9094TCONS_00055701-exon-scaffold_257-1575043694:8964..9094Clytia hemisphaericaexon
TCONS_00055701-exon-scaffold_257-1510915933:9539..9792TCONS_00055701-exon-scaffold_257-1510915933:9539..9792Clytia hemisphaericaexon
TCONS_00055701-exon-scaffold_257-1510915933:8964..9094TCONS_00055701-exon-scaffold_257-1510915933:8964..9094Clytia hemisphaericaexon
TCONS_00055701-exon-scaffold_257-1491911889:9539..9792TCONS_00055701-exon-scaffold_257-1491911889:9539..9792Clytia hemisphaericaexon
TCONS_00055701-exon-scaffold_257-1491911889:8964..9094TCONS_00055701-exon-scaffold_257-1491911889:8964..9094Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_257supercontigscaffold_257:8964..9792 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.393141	0	0	0	0	0	0	0	0.920438	0.13475	0	0	0.320219	0.399034	0.765615	1.50236	0	0	0	1.62256	1.27403	0	0.629246	0	0	3.89087	4.37583	0.875962	2.53422
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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