TCONS_00055707 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055707
Unique NameTCONS_00055707
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055707 ID=TCONS_00055707|Name=TCONS_00055707|organism=Clytia hemisphaerica|type=transcript|length=257bp
CACAGCAAGCAGGAAGATATATCAATGATTCCAAAATGAAATGGGCAAAC
TCGTACACAAAAAAGGAGACAATGACATATGAAGGCACCGACTACAAGAC
AGTTTACCTCTGAATATATGCAAAGAAAACCATTCCCAAAGGCTGCGAAA
TAAGATACGATTATGGCGATAGGGATGAAGCATGTAGCTGGCGTTTAAAG
GTGATAATTTACGGTATTCTCTTTCGATACTGAATACACTCCTCCGGTCT
TAAATAA
Run BLAST on NCBI

transcript from alignment at scaffold_257:137109..137642-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055707 ID=TCONS_00055707|Name=TCONS_00055707|organism=Clytia hemisphaerica|type=transcript|length=534bp|location=Sequence derived from alignment at scaffold_257:137109..137642- (Clytia hemisphaerica)
CACAGCAAGCAGGAAGGTACGCTTTTGTGTGAAGAATGCACCAAGCTTAT
TTGTGACATTTAAATGTCTCCTCGCTATAAAGGTTTCCCTTTGTAATAAT
TTAACCCAACATCCTTTTTTGAATATACATTGTGATGCTATTATTTTGCC
TTATAATTTCCTGCCATCCCTTTTTCAGATATATCAATGATTCCAAAATG
AAATGGGCAAACTCGTACACAAAAAAGGAGACAATGACATATGAAGGCAC
CGACTACAAGACAGTTTACCTCTGAATATATGCAAAGAAAACCATTCCCA
AAGGCTGCGAAATAAGGTTTAGCTTTCAATCAATACGGTTATTCTAAATT
TTTAGTAGATAGTAGATTTCACAACACTGGGATTTTGAGTGCGACATTCA
AAAGCATAGAAAGTTTTTTCCCTTTATTTAGATACGATTATGGCGATAGG
GATGAAGCATGTAGCTGGCGTTTAAAGGTGATAATTTACGGTATTCTCTT
TCGATACTGAATACACTCCTCCGGTCTTAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035057XLOC_035057Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055707-exon-scaffold_257-1575043694:137627..137642TCONS_00055707-exon-scaffold_257-1575043694:137627..137642Clytia hemisphaericaexon
TCONS_00055707-exon-scaffold_257-1575043694:137327..137464TCONS_00055707-exon-scaffold_257-1575043694:137327..137464Clytia hemisphaericaexon
TCONS_00055707-exon-scaffold_257-1575043694:137109..137211TCONS_00055707-exon-scaffold_257-1575043694:137109..137211Clytia hemisphaericaexon
TCONS_00055707-exon-scaffold_257-1510915933:137627..137642TCONS_00055707-exon-scaffold_257-1510915933:137627..137642Clytia hemisphaericaexon
TCONS_00055707-exon-scaffold_257-1510915933:137327..137464TCONS_00055707-exon-scaffold_257-1510915933:137327..137464Clytia hemisphaericaexon
TCONS_00055707-exon-scaffold_257-1510915933:137109..137211TCONS_00055707-exon-scaffold_257-1510915933:137109..137211Clytia hemisphaericaexon
TCONS_00055707-exon-scaffold_257-1491911889:137627..137642TCONS_00055707-exon-scaffold_257-1491911889:137627..137642Clytia hemisphaericaexon
TCONS_00055707-exon-scaffold_257-1491911889:137327..137464TCONS_00055707-exon-scaffold_257-1491911889:137327..137464Clytia hemisphaericaexon
TCONS_00055707-exon-scaffold_257-1491911889:137109..137211TCONS_00055707-exon-scaffold_257-1491911889:137109..137211Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_257supercontigscaffold_257:137109..137642 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.687259	0	0	1.5226	3.70723	3.66188	1.76716	4.96318	1.15828	6.45622	1.51293	5.03482	4.77513	6.64547	0.780497	0.837593	0	0	0	0	0	0	0	0	2.95152	5.92686	0.942368	2.01144	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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