TCONS_00055711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055711
Unique NameTCONS_00055711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055711 ID=TCONS_00055711|Name=TCONS_00055711|organism=Clytia hemisphaerica|type=transcript|length=470bp
CTTAGATCGCCGGGCACTCGATGATATGGTTGTCGAGTGCAGATTAGCCA
TTAATACTGCCAAGGACAACTATTTTTCTCGTCTTGGCAATTCTTTAAAT
GATCCAAACATCGGAGgtaagaaatactggtctaccCTTAAGCAGTTCCT
GAGCATACGAAAAACCCCTAAAATTCCACCCATTCGCGACGAAAGAAACG
TCCTTGTGAGCGATGTTTCTGAGAAAGCCGATATTTATAACTCTTTTTTT
GCAAAGCAATGTTCTTTGATCGAAACTGGCAGCGTGCTGCCACCTGAACA
ATTTTTCACTGACTCCAGGCTAAATAACCTTGAATTTGACGAAGAAAAAA
TCGCGTCAATTATTAATTCtatataataattatataataacgatatttcg
ttctattttcagaacttcatcaGGTATGATACTGCACAAGCGTTAACACA
TTTTTAAATGCTACAAAATC
Run BLAST on NCBI

protein sequence of TCONS_00055711-protein

>TCONS_00055711-protein ID=TCONS_00055711-protein|Name=TCONS_00055711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
LDRRALDDMVVECRLAINTAKDNYFSRLGNSLNDPNIGGKKYWSTLKQFL
SIRKTPKIPPIRDERNVLVSDVSEKADIYNSFFAKQCSLIETGSVLPPEQ
FFTDSRLNNLEFDEEKIASIINSI
Run BLAST on NCBI

transcript from alignment at scaffold_257:84677..85146

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055711 ID=TCONS_00055711|Name=TCONS_00055711|organism=Clytia hemisphaerica|type=transcript|length=470bp|location=Sequence derived from alignment at scaffold_257:84677..85146 (Clytia hemisphaerica)
GATTTTGTAGCATTTAAAAATGTGTTAACGCTTGTGCAGTATCATACCtg
atgaagttctgaaaatagaacgaaatatcgttattatataattattatat
aGAATTAATAATTGACGCGATTTTTTCTTCGTCAAATTCAAGGTTATTTA
GCCTGGAGTCAGTGAAAAATTGTTCAGGTGGCAGCACGCTGCCAGTTTCG
ATCAAAGAACATTGCTTTGCAAAAAAAGAGTTATAAATATCGGCTTTCTC
AGAAACATCGCTCACAAGGACGTTTCTTTCGTCGCGAATGGGTGGAATTT
TAGGGGTTTTTCGTATGCTCAGGAACTGCTTAAGggtagaccagtatttc
ttacCTCCGATGTTTGGATCATTTAAAGAATTGCCAAGACGAGAAAAATA
GTTGTCCTTGGCAGTATTAATGGCTAATCTGCACTCGACAACCATATCAT
CGAGTGCCCGGCGATCTAAG

Coding sequence (CDS) from alignment at scaffold_257:84677..85146

>TCONS_00055711 ID=TCONS_00055711|Name=TCONS_00055711|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_257:84677..85146 (Clytia hemisphaerica)
ttatataGAATTAATAATTGACGCGATTTTTTCTTCGTCAAATTCAAGGT
TATTTAGCCTGGAGTCAGTGAAAAATTGTTCAGGTGGCAGCACGCTGCCA
GTTTCGATCAAAGAACATTGCTTTGCAAAAAAAGAGTTATAAATATCGGC
TTTCTCAGAAACATCGCTCACAAGGACGTTTCTTTCGTCGCGAATGGGTG
GAATTTTAGGGGTTTTTCGTATGCTCAGGAACTGCTTAAGggtagaccag
tatttcttacCTCCGATGTTTGGATCATTTAAAGAATTGCCAAGACGAGA
AAAATAGTTGTCCTTGGCAGTATTAATGGCTAATCTGCACTCGACAACCA
TATCATCGAGTGCCCGGCGATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035061XLOC_035061Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055711-proteinTCONS_00055711-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055711-exon-scaffold_257-1491911889:84677..85146TCONS_00055711-exon-scaffold_257-1491911889:84677..85146Clytia hemisphaericaexon
TCONS_00055711-exon-scaffold_257-1510915933:84677..85146TCONS_00055711-exon-scaffold_257-1510915933:84677..85146Clytia hemisphaericaexon
TCONS_00055711-exon-scaffold_257-1575043694:84677..85146TCONS_00055711-exon-scaffold_257-1575043694:84677..85146Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_257supercontigscaffold_257:84677..85146 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.27186	0.144838	0	0.418642	0	0.649218	0.243791	1.02488	0.601475	0.733437	1.19693	0.709868	1.18034	1.04276	0.457149	0.314798	0.25631	0.558664	1.39731	1.92928	0.26285	0.762751	0.155855	0	1.48797	1.042	0.20699	0.333971	0.375396	0.21326
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top